mRNA_P-littoralis_Contig122.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.22.1
Unique NamemRNA_P-littoralis_Contig122.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.22.1 vs. uniprot
Match: A0A6H5KYN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.080e-15
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  514 MRSFFPGDALFVVCCSGYAHAAR---LRLVCLSVCNACREQTPWPLIAARGLPLQLLSWHLRGGDRLRQQ 714
            M     GD L +V CSGYA  A    L  VCL+VCNACREQTPW L AA G+P  LLSWHLRGGDRL  Q
Sbjct:    1 MPGILAGDILAIVWCSGYAGPAAATPLETVCLAVCNACREQTPWTLRAAPGMPPSLLSWHLRGGDRLLLQ 70
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BLAST of mRNA_P-littoralis_Contig122.22.1 vs. uniprot
Match: D7FNE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.380e-13
Identity = 43/71 (60.56%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  514 MRSFFPGDALFVVCCSGYAH----AARLRLVCLSVCNACREQTPWPLIAARGLPLQLLSWHLRGGDRLRQQ 714
            M      D L +V  SGYA     AA L  VCL+VCNACREQTPW L AA G+P  LLSWHLRGGDRL  Q
Sbjct:    1 MPGILASDILAIVWVSGYAGPAAAAASLETVCLAVCNACREQTPWALRAAPGMPPWLLSWHLRGGDRLLLQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYN5_9PHAE2.080e-1562.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE9_ECTSI1.380e-1360.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:100339..105690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size766
Hectar predicted targeting categoryother localisation
Exons3
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.6764367-UTR-P-littoralis_Contig122:100338..1003741680789524.6764367-UTR-P-littoralis_Contig122:100338..100374Pylaiella littoralis U1_48UTRP-littoralis_Contig122 100339..100374 +
1680789524.715074-UTR-P-littoralis_Contig122:105308..1053181680789524.715074-UTR-P-littoralis_Contig122:105308..105318Pylaiella littoralis U1_48UTRP-littoralis_Contig122 105309..105318 +
1680789524.724518-UTR-P-littoralis_Contig122:105366..1056901680789524.724518-UTR-P-littoralis_Contig122:105366..105690Pylaiella littoralis U1_48UTRP-littoralis_Contig122 105367..105690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.6867528-CDS-P-littoralis_Contig122:100374..1004681680789524.6867528-CDS-P-littoralis_Contig122:100374..100468Pylaiella littoralis U1_48CDSP-littoralis_Contig122 100375..100468 +
1680789524.7014177-CDS-P-littoralis_Contig122:105006..1053081680789524.7014177-CDS-P-littoralis_Contig122:105006..105308Pylaiella littoralis U1_48CDSP-littoralis_Contig122 105007..105308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.22.1prot_P-littoralis_Contig122.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 100375..105308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.22.1

>prot_P-littoralis_Contig122.22.1 ID=prot_P-littoralis_Contig122.22.1|Name=mRNA_P-littoralis_Contig122.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MMTIIHRLPHPPGCAGARLLSPSSRQPRNNGGRGTPLSWEKPFKNRWRAK
RPAFQPAITSSRAKERRGASGVDGLKGRGKRWTHEDGNHTCSHARTHACS
LAHRGERTALPASCFPSTVEPHMINPSINRS*
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mRNA from alignment at P-littoralis_Contig122:100339..105690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.22.1 ID=mRNA_P-littoralis_Contig122.22.1|Name=mRNA_P-littoralis_Contig122.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5352bp|location=Sequence derived from alignment at P-littoralis_Contig122:100339..105690+ (Pylaiella littoralis U1_48)
TCATGTGTACGTAATGCTCTGCGAAGCTGTCCACACATGATGACCATTAT
CCACAGGTTGCCCCACCCCCCCGGCTGCGCCGGCGCGCGGTTACTCAGCC
CGTCATCGAGACAGCCCCGCAACAATGGTGGTGAGAGAAAGTTTCATTCG
CATACAACATATCAGAACACTGCTGCAGTGGGGTGCTCTGAAAAATAGCA
GTCTGCTACTTACTGTTCCCGTGCATACCACGATACTTCTATATATACAA
CGAACCGCAGTACAGAGCAGCTCGACACAGCAGTGAGTAGCACAGCAGTA
CACAGAAAGTCCTCCGCATGACCACATGTTGAACCGAATCCCTGTCGGTT
CGCTTTGCAGCAGTAGCTGTGTCGGATCAATGACTACGGTATGACACAGC
AGCAGTGCATGAACATTGGTACAGTATGGATGTATCGTAAATAAAATACT
CCGCACGCACTGCGTATTCTTCTTGGATGCTTGTTGTCCCGGAATATCTG
TCATATACGGAGCATACCACTGCTGGGTATCATGTGTGTGTGTGTCATCC
CATTGAGTATCATGAGCACTGCAGTTTTAAAATACGAAGGACTACTACTG
CTGTATATACGAAGTACTTTCGTGTGTAGATTGGCGCCACTGAATGCGCC
AGTACTGCTGTAGCACACGGGAAAGCGTTTGCCGGTGAGGCTGTTCACCA
CCAACAGCAACCTAGAACCTTCACGAGAAGTTTTTTTTTCTTCTTCTTAT
AGTCCAGGCAGAAGAATTTTTCCAGAAGTTCGACATTTATATATTGAGTT
GTTTTGAGGTGGTCACTTACATTTACAAGACGTAAAATATATCGACGGAA
AGCTCTCTTTCAGACGGATCGAACCATCGTGGCAGATTTTTTTTTTTCAT
CGTTGCGTCGGAGTAATTCGTTTTTTCGATAAAAATTGGTCAAGATTTTG
TAGGTCGACACAGGTGTCATCTTTTTTTTTTGACACCGGTTTTGAACGTA
TCTCGACCAGGGGCAGATTCCTGTCGAAGCAGATTCTTTTTTTATCTATT
TTTAAGCGAGATATGGGCGAAAAACCCACTTTTCCCCTGCTCCAGCTGTG
GAGATTTTAGCGCAAAACTGGCACGATGGATGTCGAAAAATTCCTCGGAT
TCGGATGAATTGGACCTGTACCCAGGACCATTTTTTTTTTTTTTTGAAAA
AAACTCTGTGGGCCGAGAAAAGCCGTTGTGAAAAATGGCGCCCTCAGTTT
TTTTTTTTGAATAATTAACACTTGAAGTTAGAGTACCAACAGGGCACAAC
CACCAAGTACACACCAGGTGGCACACACACGTTGGTGTACTGGTGTACAC
ATCCACACACCCACACACGAGGACCATGCCCGGCGGGTGCCCACCAAAGA
AGAAGTACAGTTACATGCAATACAGAGACCTAAAGAAGTGGACGAGCCAC
CGCTCATCTACTGATCGGGTTGATGCCGTGTTGATGGCAAAGAGCACGGC
CGCATCACCCGAGGAGCGCAAGAAAAACGAGTAGACGGCACTTGCAGCCT
CGCGGGAAGCCAGGATAGACTCTATGAAACACTTGAACAAATCATTAAAG
CACTTGAACGACTCGCGCTTGGACACGAGTTTGGAGACGGTGGCGTCGGC
TCCTACGTAAAGTTGCTGTTGTGTATTTTACTTTTATATATATACCAGGT
ATATTACCTACTGCTGTGTGTGTGTGTTGTCATCCCATATTCTCTGGCAC
ACTAGTCTGCAAACTACTGCTGTGTGTGTGTGTGTGTTTTCTTCACATTA
AAAATCGTTCCAATCTCTGCTAGTATATGATATGTATTTAAATATATATG
TAGAACTACAGAAGTACCTTGCTTCGCTATTACGAAGTGCCTTCTCGACA
AGTCGGTCATGGATTGGGTGGTGGATTGGGGTTAATTCAGTTTCGATTAG
GGGCATTTTTTTTTGCGGTTTCAGGATAAAAAAGAAAGGAAAAAAAAGGT
AAAAAAAAAAAAATCCCAAAAAAAGTCGAAAATGGCCATTGTTCATGGAA
TTTTTTTTTAAGACTGGTTTTGGGTTCCTCTCGGCCGCGCGATTCTGGAA
AAGTTTGTTTCACCTGTCAACTCCTTAAAATGACGGAGAAAAAACCGGTA
CCCCCTTTGGAAAAATTCTTCTGCCTGGACCATACGACACATAAAAAAAC
ACACATCAATGTGTTCGCCTCTCCCCAGACGAGGATCCGGGGTAGATATT
GCAGCGAGCACAGAGAAAAGTACACATCTACCTGTTGTGTTTCTAAACTC
ATCAGATAGTGCACCGTTGCAGCTCCCCTGAGGTTGTTAGGCTCAACAAG
ACAATTTGGTCGTCGTCTTGTGACACACGTTATACCATGCGTTGAGTGCG
GTCTATGTAGAAGGTTTTATAACATTTAGTGCCCGCAGTTTTCGTATTGG
TCGATATGGGCACTAGTGATTTCTTGATGGCCTCGAGCACCCGCCCGATG
CCCCTCTTGAGTGAGCCGTCGTTGTGGCCCGCGCTGTATGCTTGGATCCG
TTTTCGCCTGACTCTCCTGTCGTTCTTGGCAAGAGAGCCGGGATTTATGC
TTTGTCAGGACTCAAAGATCCTCGAACGGCGCTTCATGCTCCTCCAGCCA
TTTGGCACATTCGGAGATATTATGGTCTACGTCATATCCATAAGAATAAC
CACCACGTACATTATTTCCTGTGATTGTGGGTGTTGAACCTACCGGTCGA
CCACGACATTGTCGGCGTTGCTCTTGTTTTTCGTCCAACCTCTTCCCAGA
CTGCTTCTAGTTCGATTACACCGCACACACACGCGTCTACATCCCGTATC
GTGTGGGGCAAGGAGCAGTCAAGACGATAGAGAGTTGGTTGGAGCTCGCT
TGAAACGGCCCAGACCAGCTCCCTGGCGCACAGGTTGCACCTACCCCTAA
AAGCGTTCATAAATTCTTCGACCAAATCCACACTATGTTGATGTCCCTCT
GCGATGGACCCGAGGCGGCCGGCCTATACATCGGCGTACGTAGATGTATC
CAGAAATATTCCCCGAAACCCTCGACTTCCTCCCCTCGCAACTCATGTCG
CTCACGCTCTGATGAAAACTGCGGGCACTAGATACCTTTCTCTATGCACA
GCAACCAAGCTGTCCACAAATCCTGGTGGTTGGGGTTGGGATTTGTTTTT
TTAGGGTCGTGCGCCCGTGCTTTGTGGAAGCTGAAGGGCGGAAACCTCCT
GTGTATGTTTAAGAGCGTGTCTGCCTCCAAACAGAACGAAATAATCTGCT
GCTTGCATACGCTTTCCTCTGGCCAGCGCTGGCACATTTACGGACGCCGA
TATGTAGACGTGCATAGAGTAGTGGTAAAGGTATCGTAAGACAATGGTGC
TGCACTAGTCAGGACAATCACGTTCGAAGAGATATCATCCCTGAGTTGTA
ATTATGTGAGACATCATCATATCTTCGAGTTTCATAGACTATGATATTTT
ATCGCATGAAGTGTACTGCACGCATGTTGTTGCAAATTATCCTCTATCAT
CTTGATAACGTTCCTGCTCAAGCATCATGTCACATGACCACCGTAAAATT
TCGTCCTTCCCCAAACCAACAAAACTACTTCGACACATATATCATGCAAG
TACAATCTTCCATTGGTCCTTCCCCAAACCAAAGACTCATGTGTGTGATA
CTGTTGTACCACACCTGCCCGCAGCTTTCTGGCGTGCATACTTGTACGTC
ACTGATACTCAAGTACTTGTGTTGTACGATGGACCCAAAGACAACCAAAA
GGCGAGTCACGTACTTGTACTGTACGCTAAAGCCAGAGACAACCATATAG
TTTGACATCATGATTAGATTATGTGCATCGTATCATCGCATCCTATTATG
CCTGCCTGTAGATTTTCAATGCTGGAGTTTATATGTGCGTTGTGAAGGTA
TCCAATATTTTTTGAACGTCAGTCAAGACGTTCGGTATACTAAGCCGGGC
GTAATAGCCGGGATAACACAGGAGGAAGGTCAACACAGTTCTTTGTTTTG
TTGTTCACCACCTTTCCCGCGCGATGCTCTCCTTTTTTTTTATCGCGAGG
CGGGTTGTACCGTCCCTAACCCTCGTCGACTTTTTTCCATTCAAAGTTTG
TTCACTCGCGATCATGCTGTGTACCTGTGACGTATTATCGCCTTCCAATT
TCAGGCATGGGGAGAGGGAAAAATCCAGCTCACCGGAATGCAAACTCACC
ACATACGAATAGGTGTCAATAGGTTTCGAGGTTACCCACTGCAGCACCGG
GGCGACCGCACACTGCCCTGCAGTATACACTCTGCTGGTGCGATGTCATC
GAACACGCCATACATGGTATTTGTTGGACCTCTCTCTCTCTTTCTCTCTC
TAAAAATCGGGTCACCAATTACAATCAGCAGGATATATATATTTTTTTCT
TTTCTCTGTCTCTTTCTGTCTCTCTCTTGCTAGCCCCTCTTCCCGCATAC
TCTAAATTTTACTTGGAAGAGCTCGCGCTGTTGCTTCTTACCGCAAGAGA
ACCGACAACAACGCTACCCCATACTTGTCCCTTCCTAGCATGCCTCTTTG
CAGAACGCAGGGTCAACATTACTGCCGCCCTGCCCCCCCCCCGATATTTG
CTGCGAACGATCGTCAAGGGAGAGGCACGCCGCTTTCATGGGAGAAGCCC
TTCAAGAACAGGTGGCGAGCCAAACGTCCGGCCTTTCAGCCAGCCATTAC
TTCCTCTCGTGCGAAGGAACGACGCGGGGCAAGCGGGGTGGATGGGCTGA
AGGGGCGAGGGAAGCGATGGACTCATGAGGACGGCAACCACACATGCTCG
CACGCACGTACGCACGCTTGCTCGCTCGCACACAGAGGAGAAAGAACAGC
TCTTCCTGCTTCTTGTTTTCCATCCACCGTTGAACCGCACATGATAAACC
CTTCGATAAACCGTTCGTAGTGGCATTGACGCAGTCTCGGTGGCAGCTGC
TGTGACGTAGCATCTACGGACGATACAGCTTCCTGAGGCTGCGGATATCC
ACGGTGAGCCAGCCCCCTCTTTCACGTGCCAGCGTCACAACGATCGATCA
TGCGGAGCTTTTTTCCCGGCGACGCGCTGTTCGTCGTGTGCTGCTCGGGG
TACGCGCACGCGGCGAGGCTCAGGTTGGTCTGCCTGTCAGTCTGCAACGC
CTGTCGGGAGCAGACACCGTGGCCCTTGATTGCAGCGAGGGGCCTACCCC
TCCAGCTCCTGTCCTGGCATCTGCGCGGCGGGGACCGCTTGCGGCAGCAG
TCGAGAACTCGGCATGCAAATGGCGGCTGCGGCTACGGCTGCGGCTGCGG
TG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:100339..105690+

>mRNA_P-littoralis_Contig122.22.1 ID=mRNA_P-littoralis_Contig122.22.1|Name=mRNA_P-littoralis_Contig122.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig122:100339..105690+ (Pylaiella littoralis U1_48)
ATGATGACCATTATCCACAGGTTGCCCCACCCCCCCGGCTGCGCCGGCGC
GCGGTTACTCAGCCCGTCATCGAGACAGCCCCGCAACAATGGTGGGAGAG
GCACGCCGCTTTCATGGGAGAAGCCCTTCAAGAACAGGTGGCGAGCCAAA
CGTCCGGCCTTTCAGCCAGCCATTACTTCCTCTCGTGCGAAGGAACGACG
CGGGGCAAGCGGGGTGGATGGGCTGAAGGGGCGAGGGAAGCGATGGACTC
ATGAGGACGGCAACCACACATGCTCGCACGCACGTACGCACGCTTGCTCG
CTCGCACACAGAGGAGAAAGAACAGCTCTTCCTGCTTCTTGTTTTCCATC
CACCGTTGAACCGCACATGATAAACCCTTCGATAAACCGTTCGTAG
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