mRNA_P-littoralis_Contig122.166.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.166.1
Unique NamemRNA_P-littoralis_Contig122.166.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:504891..505421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.1888611-UTR-P-littoralis_Contig122:504890..5049101680789525.1888611-UTR-P-littoralis_Contig122:504890..504910Pylaiella littoralis U1_48UTRP-littoralis_Contig122 504891..504910 +
1680789525.2171662-UTR-P-littoralis_Contig122:505240..5054211680789525.2171662-UTR-P-littoralis_Contig122:505240..505421Pylaiella littoralis U1_48UTRP-littoralis_Contig122 505241..505421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.2013109-CDS-P-littoralis_Contig122:504910..5052401680789525.2013109-CDS-P-littoralis_Contig122:504910..505240Pylaiella littoralis U1_48CDSP-littoralis_Contig122 504911..505240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.166.1prot_P-littoralis_Contig122.166.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 504911..505240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.166.1

>prot_P-littoralis_Contig122.166.1 ID=prot_P-littoralis_Contig122.166.1|Name=mRNA_P-littoralis_Contig122.166.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MMYAWFMVSPWGQRCCFWFVFSVDALLRWGFRSAATRKIYAAVVGSLLLR
VSGLCSSQMCRDSLRVQLVSSWRYFSTVLIYKYLIWLGQSPCQPPSVSHG
HLGCLKWLF*
back to top

mRNA from alignment at P-littoralis_Contig122:504891..505421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.166.1 ID=mRNA_P-littoralis_Contig122.166.1|Name=mRNA_P-littoralis_Contig122.166.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig122:504891..505421+ (Pylaiella littoralis U1_48)
TCAGTTTAAAACATTTTTCGATGATGTATGCATGGTTTATGGTCAGCCCT
TGGGGGCAGCGCTGTTGCTTTTGGTTCGTTTTTTCGGTTGACGCTTTGCT
GCGTTGGGGGTTCCGGTCAGCAGCAACGCGCAAGATATATGCAGCAGTAG
TCGGGAGTCTCCTTTTGCGAGTGTCGGGACTGTGTAGCTCGCAGATGTGC
CGCGATTCTCTGCGCGTTCAACTTGTGTCGAGTTGGCGCTATTTTAGCAC
CGTCTTGATCTACAAATATTTAATTTGGCTGGGACAATCACCTTGTCAGC
CCCCGAGCGTTTCGCACGGTCATCTTGGGTGCTTAAAGTGGCTCTTTTAA
TGTTTGTTCACGCGGTCGCTTTCAGTCAGTCGTTCACGTGAAGCCGGATA
CACGATTACAATCGTCGGCAACTTTTTTCAACACCAAAAACTTGACCAAC
GGCAAAAATGCTTTCTTGTGCGTTCAATCGTTGGTGAGCCTTCAAATGCT
TCAATTAGTAGCGGAGCCTTCTCGCAAATAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig122:504891..505421+

>mRNA_P-littoralis_Contig122.166.1 ID=mRNA_P-littoralis_Contig122.166.1|Name=mRNA_P-littoralis_Contig122.166.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig122:504891..505421+ (Pylaiella littoralis U1_48)
ATGATGTATGCATGGTTTATGGTCAGCCCTTGGGGGCAGCGCTGTTGCTT
TTGGTTCGTTTTTTCGGTTGACGCTTTGCTGCGTTGGGGGTTCCGGTCAG
CAGCAACGCGCAAGATATATGCAGCAGTAGTCGGGAGTCTCCTTTTGCGA
GTGTCGGGACTGTGTAGCTCGCAGATGTGCCGCGATTCTCTGCGCGTTCA
ACTTGTGTCGAGTTGGCGCTATTTTAGCACCGTCTTGATCTACAAATATT
TAATTTGGCTGGGACAATCACCTTGTCAGCCCCCGAGCGTTTCGCACGGT
CATCTTGGGTGCTTAAAGTGGCTCTTTTAA
back to top