mRNA_P-littoralis_Contig122.165.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.165.1
Unique NamemRNA_P-littoralis_Contig122.165.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.165.1 vs. uniprot
Match: D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.080e-28
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:   32 LVILMAMVLHMASAGFE-LAVDSEGDTIRTQDRDPFKEDYFNMVLASFLLMFFFIGCMFSVRICLGKRRGNDSQSFFLVA 268
            L++L+A VLHM  A  E   V +   +IR QDRDPFKE YFNM+++ F LMFFFIGCMFSVRICLGK+RGNDS SFFLVA
Sbjct:    8 LLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI6_ECTSI2.080e-2867.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:504182..504469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789529.8163543-UTR-P-littoralis_Contig122:504181..5041851680789529.8163543-UTR-P-littoralis_Contig122:504181..504185Pylaiella littoralis U1_48UTRP-littoralis_Contig122 504182..504185 +
1680789529.8380556-UTR-P-littoralis_Contig122:504452..5044691680789529.8380556-UTR-P-littoralis_Contig122:504452..504469Pylaiella littoralis U1_48UTRP-littoralis_Contig122 504453..504469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789529.8269353-CDS-P-littoralis_Contig122:504185..5044521680789529.8269353-CDS-P-littoralis_Contig122:504185..504452Pylaiella littoralis U1_48CDSP-littoralis_Contig122 504186..504452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.165.1prot_P-littoralis_Contig122.165.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 504186..504452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.165.1

>prot_P-littoralis_Contig122.165.1 ID=prot_P-littoralis_Contig122.165.1|Name=mRNA_P-littoralis_Contig122.165.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MLSMMKSPLLVILMAMVLHMASAGFELAVDSEGDTIRTQDRDPFKEDYFN
MVLASFLLMFFFIGCMFSVRICLGKRRGNDSQSFFLVA*
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mRNA from alignment at P-littoralis_Contig122:504182..504469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.165.1 ID=mRNA_P-littoralis_Contig122.165.1|Name=mRNA_P-littoralis_Contig122.165.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig122:504182..504469+ (Pylaiella littoralis U1_48)
CGTGATGCTTTCCATGATGAAGTCGCCGCTGCTGGTCATTTTGATGGCGA
TGGTCCTTCACATGGCATCGGCAGGGTTTGAGCTTGCTGTGGACAGCGAA
GGGGACACGATTCGGACCCAGGATCGCGACCCTTTCAAGGAGGATTACTT
CAACATGGTCCTCGCTTCGTTCCTCCTCATGTTCTTCTTCATCGGCTGCA
TGTTCAGCGTCCGTATCTGCTTGGGCAAGCGCCGGGGAAACGACTCCCAG
TCCTTCTTCTTGGTTGCCTGATTTTTTTAAGCGTACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:504182..504469+

>mRNA_P-littoralis_Contig122.165.1 ID=mRNA_P-littoralis_Contig122.165.1|Name=mRNA_P-littoralis_Contig122.165.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig122:504182..504469+ (Pylaiella littoralis U1_48)
ATGCTTTCCATGATGAAGTCGCCGCTGCTGGTCATTTTGATGGCGATGGT
CCTTCACATGGCATCGGCAGGGTTTGAGCTTGCTGTGGACAGCGAAGGGG
ACACGATTCGGACCCAGGATCGCGACCCTTTCAAGGAGGATTACTTCAAC
ATGGTCCTCGCTTCGTTCCTCCTCATGTTCTTCTTCATCGGCTGCATGTT
CAGCGTCCGTATCTGCTTGGGCAAGCGCCGGGGAAACGACTCCCAGTCCT
TCTTCTTGGTTGCCTGA
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