mRNA_P-littoralis_Contig122.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.145.1
Unique NamemRNA_P-littoralis_Contig122.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig122.145.1 vs. uniprot
Match: A0A6H5KLY6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.190e-38
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 AVAKAGSSTRVLAGWSVQMDIGQRAGHSWRIKYVSPDGSVFPSAKPALVALGLAQEGSTERPTSPPSVRRKRRTPTNSPQQAPAVCKTTRYIYPDGPQYLLKELLAGAFPPSPFGLIE 354
            AVA+ G+ST VL GW VQMD GQ A  SWRI+YV+PDGSVFP  KP L ALGL   G +  PTSPPS+RRK RTPT SPQ  PA C T R+ +P+G  YLLK   AG FPPSPFGLIE
Sbjct:  130 AVARVGASTGVLTGWCVQMDRGQTAEDSWRIRYVAPDGSVFPCVKPVLKALGLGH-GVSGYPTSPPSLRRKSRTPTTSPQPLPAACATIRH-HPNGSAYLLKNPRAGTFPPSPFGLIE 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLY6_9PHAE7.190e-3865.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:434439..435115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKJ0
Preferred nameMBD4
PFAMsHhH-GPD,MBD
Model size355
Max annot lvl2759|Eukaryota
KEGG koko:K10801
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000700,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008263,GO:0008630,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0012501,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022402,GO:0023052,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044773,GO:0044774,GO:0044818,GO:0045008,GO:0045786,GO:0045930,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1990837
Exons2
Evalue4.14e-38
EggNOG OGsKOG4161@1|root,KOG4161@2759|Eukaryota
Descriptiondomain protein
Cds size354
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789529.303739-CDS-P-littoralis_Contig122:434438..4345491680789529.303739-CDS-P-littoralis_Contig122:434438..434549Pylaiella littoralis U1_48CDSP-littoralis_Contig122 434439..434549 +
1680789529.3196974-CDS-P-littoralis_Contig122:434871..4351141680789529.3196974-CDS-P-littoralis_Contig122:434871..435114Pylaiella littoralis U1_48CDSP-littoralis_Contig122 434872..435114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.145.1prot_P-littoralis_Contig122.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 434439..435114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.145.1

>prot_P-littoralis_Contig122.145.1 ID=prot_P-littoralis_Contig122.145.1|Name=mRNA_P-littoralis_Contig122.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
AVAKAGSSTRVLAGWSVQMDIGQRAGHSWRIKYVSPDGSVFPSAKPALVA
LGLAQEGSTERPTSPPSVRRKRRTPTNSPQQAPAVCKTTRYIYPDGPQYL
LKELLAGAFPPSPFGLIE
back to top

mRNA from alignment at P-littoralis_Contig122:434439..435115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.145.1 ID=mRNA_P-littoralis_Contig122.145.1|Name=mRNA_P-littoralis_Contig122.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=677bp|location=Sequence derived from alignment at P-littoralis_Contig122:434439..435115+ (Pylaiella littoralis U1_48)
GCTGTGGCAAAGGCAGGGTCGTCAACAAGGGTGCTTGCTGGATGGTCTGT
TCAAATGGATATAGGGCAGAGGGCAGGACACTCGTGGCGGATCAAATACG
TTTCTCCAGATGTGAGTTCAGCAGTATCTGCAACCTTGATGCGGGCCATG
GGTTTGTTTGAGTTTTCCCGATTTCGTACAGTACTGCGGTCAGATAACAC
ATGCGCACGGGAAAGGGGTGCCGTCTAGTCTTTTGCCTCCGACCCTCTGT
GCCATAATTTGCAAGCGAATGCTGTTCTTTAAGCACAATGTCGCCTGTTC
ATCTACGGTGTACTCCGGCGCAAGCAGCACGCCATCAAACCCTGTTTGAT
TCCGTCGTGGAATCGCACACACCACGTGCGGGGGCATCCGTTCTAACCGC
AGTTCACGCACGTACTTCCCCTCGATGCCTCAGGGAAGCGTCTTCCCTTC
CGCAAAGCCGGCGCTGGTGGCCCTGGGCTTGGCGCAGGAGGGAAGTACCG
AACGTCCGACATCGCCTCCTTCCGTACGCCGAAAAAGGCGAACCCCAACA
AACTCACCGCAGCAGGCACCCGCCGTCTGTAAAACAACCAGGTACATCTA
TCCCGACGGGCCTCAGTACTTGCTCAAGGAGCTACTAGCTGGGGCGTTTC
CGCCCTCCCCGTTTGGACTCATAGAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig122:434439..435115+

>mRNA_P-littoralis_Contig122.145.1 ID=mRNA_P-littoralis_Contig122.145.1|Name=mRNA_P-littoralis_Contig122.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig122:434439..435115+ (Pylaiella littoralis U1_48)
GCTGTGGCAAAGGCAGGGTCGTCAACAAGGGTGCTTGCTGGATGGTCTGT
TCAAATGGATATAGGGCAGAGGGCAGGACACTCGTGGCGGATCAAATACG
TTTCTCCAGATGGAAGCGTCTTCCCTTCCGCAAAGCCGGCGCTGGTGGCC
CTGGGCTTGGCGCAGGAGGGAAGTACCGAACGTCCGACATCGCCTCCTTC
CGTACGCCGAAAAAGGCGAACCCCAACAAACTCACCGCAGCAGGCACCCG
CCGTCTGTAAAACAACCAGGTACATCTATCCCGACGGGCCTCAGTACTTG
CTCAAGGAGCTACTAGCTGGGGCGTTTCCGCCCTCCCCGTTTGGACTCAT
AGAA
back to top