mRNA_P-littoralis_Contig122.116.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.116.2
Unique NamemRNA_P-littoralis_Contig122.116.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 2.090e-152
Identity = 236/292 (80.82%), Postives = 255/292 (87.33%), Query Frame = 1
Query:   19 VAACWVSGTQAFVVPGAPMASVSAQQGA------AAATSMRMAAGEG---SPCSRSEALGTLGAALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEGKFD 867
            VAACW  G  AF+ PG P+  VSA+Q +      AA T M ++  EG   S CSRSEAL T GAA+LGA VVGTGVPAPASA S+AEANK+LS+++LPPVV+VP GFNTL+EGYGKDGALKNSLGSSNRDPILVTWNYPKGW+V RPNTDTNKEAGTVSTGDYGRGDSA LFV PKSLIGGSSLS+K+TMEGV+KKALSQKGENQFQSFKLKSVKDG TDF  NKYYIADFQYELLTGAGFTVERKGVASV Q+GNSVNAVVGATTANRAKTVKPQLQEIA SFRVYEGKFD
Sbjct:    7 VAACWAGGINAFITPGVPVVPVSARQASSSSGRVAATTRMGVSDREGLASSACSRSEALSTFGAAVLGAVVVGTGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEGKFD 298          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 9.090e-61
Identity = 134/289 (46.37%), Postives = 175/289 (60.55%), Query Frame = 1
Query:   16 TVAACWVSGTQAFVVPGAPMASVSAQQGAAAATSMRMAAGEGS------PCSRSEALGTLGAALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLS--NKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEG 858
            T+AAC     Q FVVP A   S +AQ+ A     ++M+A  G         SR +A+    AA+  AA V    P PASA  L   N +L+ + LP V   PDG   L+E YG+D          NR+ +LVTWNYP GW+  RP+ DTN E GTV+TGDY +GDSA L V P  ++GG  LS  NK  +E +V ++++QKG NQ Q+FKLK V +GAT     +Y   +F+Y+LLTGAGF VER G  S+ QVG  V +V+  TTA R K ++P+LQEIA SFRVY+G
Sbjct:   12 TLAAC----AQGFVVPCAVRHSAAAQRSA-----LQMSAQPGDVTAAPQQVSRRQAMVAASAAI--AAAVLMQEPQPASALGLKAVNARLADYGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGATGAKGQQYINVEFKYDLLTGAGFIVERVGYGSLTQVGKGVQSVMAVTTAARLKKLQPKLQEIATSFRVYDG 280          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A7S2V7M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7M0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.510e-48
Identity = 106/250 (42.40%), Postives = 152/250 (60.80%), Query Frame = 1
Query:  151 SRSEAL---GTLGAALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVV-NVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSN-KETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEGKFD*LTFCL 885
            SR EA+   G    A++ A V+G+  P  A A S+ EAN +L+ + + P   NVP GF+ LVE +GKDG          R P L+++ YP  WV+ +P+  TN E+GT + G+Y +GDSA ++VGP  + G   ++  K+ +  +V   L+QKGENQ+Q+FK   +  GAT     KYY+ DF+YELLTGAGF ++R+GVA+V     +V A+V ATT  R K +   L  IA SFR Y+GK   L++ L
Sbjct:   58 SRREAIINAGQAAGAIMIAGVLGSS-PQSAEAKSIKEANNELTNYGVSPFEGNVPQGFSPLVEVWGKDGI---------RPPYLISFLYPALWVIQKPSMTTNGESGTYAAGNYQKGDSAAVYVGPSEVDGNDVMAKGKDYISSIVLGGLTQKGENQYQNFKTTKIVAGATGLKGQKYYVVDFKYELLTGAGFYIDRRGVAAVTGTPKNVQAIVCATTDTRYKKLADDLHVIADSFRAYDGKILGLSYNL 297          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.710e-46
Identity = 97/215 (45.12%), Postives = 132/215 (61.40%), Query Frame = 1
Query:  214 GVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEG 858
            GV  PA AA L++ N +L+ + LPP+++VP GF+ LVE YGK    K       R+ +LV + YP  WVVS+P+ D N E GT+S GDY +GDSA  +V      G     + +    VV +A+ QK +N +Q+FK+   + GA      +Y I +F+YELLTGAGFTV+RKGVASV QVG +V  +  ATTA R K +      +A SFRVY+G
Sbjct:   13 GVVQPAQAAGLSKVNGELASYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 222          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.960e-46
Identity = 98/215 (45.58%), Postives = 133/215 (61.86%), Query Frame = 1
Query:  214 GVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEG 858
            GV  PA AA L++ N +L+ + LPP+++VP GF+ LVE YGK    K       R+ +LV + YP  WVVS+P+ D N E GT+S GDY +GDSA  +V      G     + +    VVK+A+ QK +N +Q+FK+   + GA      +Y I +F+YELLTGAGFTV+RKGVASV QVG +V  +  ATTA R K +      +A SFRVY+G
Sbjct:  104 GVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A6U3V0C4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V0C4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.030e-45
Identity = 98/245 (40.00%), Postives = 142/245 (57.96%), Query Frame = 1
Query:  181 AALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKS-LIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEGKFD*LTFCLEYIV*SGYS 912
            A ++G+  + T  PA A    L   N KL+ + LPP+ NVP GF+ LVE YGK           NR P+LV++ +P  W+V+ P+ D N E GT+  G+Y +GD+AT ++ P S  +   S   K+  +  + +A+SQKG++ +Q FK+  V+    D+ + +Y I DF+Y LLTGAGF V+R+GVASV   GN+V  +  A+T  R K ++  L+ IAGSFRVY    D L    E I    Y 
Sbjct:   45 AGVVGSTFLQTAEPANAFGGGLKTCNAKLASYGLPPIANVPSGFSPLVEVYGK---------GRNRTPLLVSFVHPLDWIVTLPSQDVNGEDGTIQAGEYAKGDTATFYILPDSGKVDNISEQPKDFFKNAISRAISQKGDSIYQDFKITKVEPVKGDYNNQQYVICDFKYTLLTGAGFEVDRQGVASVTSEGNAVEVLWTASTRQRYKKLEEGLRSIAGSFRVYS---DGLNLSSERIAEPEYD 277          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A7S4MBN6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBN6_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.040e-44
Identity = 98/241 (40.66%), Postives = 143/241 (59.34%), Query Frame = 1
Query:  157 SEALGTLGAALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPK-SLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEGKFD*LT 876
            S A    GAA+  + + G   PA A    + + N KL+   LP +  +PDGF+ L E +GK          +NR P+LV + +P  WVV+ P+ D N E GT+  G+YG+GD++T FV  +   +   +   K   E V++KA+SQK  N +Q+FK+K+++    ++    Y I DFQY+L+TGAGF V+RK VASV   GN+V A+  A+TA R K ++P L++IAGSFRVY    D L 
Sbjct:   49 SNAAAVAGAAMTSSFLQGPTEPALALGGGIKKVNAKLASLGLPEMKKLPDGFSPLCELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTIQAGEYGKGDTSTFFVYEEPGNVADIASQPKSFFEDVLQKAISQKSANIYQNFKVKNIQPTKGEYKDQTYVIVDFQYQLVTGAGFEVDRKAVASVTSQGNAVEALWCASTAIRYKKMEPALRDIAGSFRVYSDGLDMLV 280          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN)

HSP 1 Score: 166 bits (420), Expect = 2.040e-44
Identity = 95/226 (42.04%), Postives = 143/226 (63.27%), Query Frame = 1
Query:  178 GAALLGAAVVGTGVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYE 855
            GA+L+ A +V    PAPA A  LA+ N+KL +  LPPV  +PDGF+ ++    +D +L            +V +N+P  W+V +P+ +TN E+GTVS GDYG+GDSA L+V      G  +   K     ++ K L+QKG+NQFQ+F++++V  G+ +       + DF+YELLTGAGFTVER+GVA+V+ V     A++  TT+ R K ++P+L++I  SFRVY+
Sbjct:   37 GASLVAAGLVSL-APAPALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGGDKAFYAK-----LIAKGLAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYD 238          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A7R9WJF7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJF7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 7.730e-44
Identity = 104/246 (42.28%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  151 SRSEALGTLGAALLGAAVVGT---GVPAPASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFV-GPKSLIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQLQEIAGSFRVYEGKFD*LT 876
            SR    GT+GAA  GA    +   G  APA AA L++ N KL    LP +  VPDGF+ L+E +GK          +NR P+LV + +P  WVV+ P+ D N E GTV  G+YG+GD+AT FV   +  +   +   K   E V++KA+SQK  N +Q+FK+ +++     +    Y I DF+Y+L+TGAGF V+RK VASV   G +V A+  A+TA R K ++P L++IA SFRVY    D L 
Sbjct:   45 SRRRFFGTVGAAA-GAVATSSLLQGPVAPAHAAKLSKVNAKLEALGLPAMGKVPDGFSPLLELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTVQAGEYGKGDTATFFVYEDEGNVADIASQPKSFFENVLQKAISQKSANIYQNFKVTNIQPTKGGYQDQTYMIVDFKYQLVTGAGFEVDRKAVASVTSQGKAVEALWCASTAVRYKKLEPALRDIASSFRVYSDGLDMLV 280          
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Match: A0A7S2RLR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLR6_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.720e-43
Identity = 104/229 (45.41%), Postives = 135/229 (58.95%), Query Frame = 1
Query:  187 LLGAAVVGTGVPAPASAASLAEAN---KKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSSNRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKSLIGGSSLSN-KETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYYIADFQYELLTGAGFTVERKGVASVAQVGN-SVNAVVGATTANRAKTVKPQLQEIAGSFRVYEG 858
            L GA      VPAP    SLA  N   +++  + +      PDGF+ +V  YG+            +DP+LVT+N P GW+V RPN D N E GTVS+GDYG+GDSA LF+GP  L GGS     KE  E +V   ++QKGE+  Q FKL+ ++    +     YY+ DF Y LLTGAGF V RKG  SV  VG+ SV A++GA+T  R K  +P L+E+A SFRVY G
Sbjct:   60 LAGALAAALAVPAP----SLAFGNDFQRQMQGYGIKDYKQAPDGFSPVVGFYGR--------AVPGQDPLLVTYNSPSGWLVVRPNIDNNGEDGTVSSGDYGKGDSAALFIGPP-LKGGSLADQPKEYFEKLVFAGVTQKGESMVQGFKLRKIQKLEAN-TETPYYLVDFTYTLLTGAGFEVNRKGTGSVTAVGDKSVQAMIGASTDVRFKKTEPLLREVAESFRVYGG 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.116.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLI1_ECTSI2.090e-15280.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8Y2_9STRA9.090e-6146.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V7M0_9STRA9.510e-4842.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DCV0_9STRA1.710e-4645.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TXP4_9STRA2.960e-4645.58Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A6U3V0C4_9STRA2.030e-4540.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4MBN6_9STRA2.040e-4440.66Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
F0YP05_AURAN2.040e-4442.04Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7R9WJF7_9STRA7.730e-4442.28Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2RLR6_9STRA4.720e-4345.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:343651..352925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLI1
Model size1506
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue6.83e-148
EggNOG OGs2C1GZ@1|root,2S4FV@2759|Eukaryota
Ec32 ortholog descriptionMog1/PsbP, alpha/beta/alpha sandwich
Ec32 orthologEc-22_001060.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.116.2prot_P-littoralis_Contig122.116.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 344287..352853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789528.4966311-UTR-P-littoralis_Contig122:343650..3442861680789528.4966311-UTR-P-littoralis_Contig122:343650..344286Pylaiella littoralis U1_48UTRP-littoralis_Contig122 343651..344286 -
1680789528.6046698-UTR-P-littoralis_Contig122:352853..3529251680789528.6046698-UTR-P-littoralis_Contig122:352853..352925Pylaiella littoralis U1_48UTRP-littoralis_Contig122 352854..352925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789528.5169878-CDS-P-littoralis_Contig122:344286..3444061680789528.5169878-CDS-P-littoralis_Contig122:344286..344406Pylaiella littoralis U1_48CDSP-littoralis_Contig122 344287..344406 -
1680789528.5272212-CDS-P-littoralis_Contig122:345898..3459981680789528.5272212-CDS-P-littoralis_Contig122:345898..345998Pylaiella littoralis U1_48CDSP-littoralis_Contig122 345899..345998 -
1680789528.5384195-CDS-P-littoralis_Contig122:346405..3464611680789528.5384195-CDS-P-littoralis_Contig122:346405..346461Pylaiella littoralis U1_48CDSP-littoralis_Contig122 346406..346461 -
1680789528.5498898-CDS-P-littoralis_Contig122:347103..3472121680789528.5498898-CDS-P-littoralis_Contig122:347103..347212Pylaiella littoralis U1_48CDSP-littoralis_Contig122 347104..347212 -
1680789528.5581782-CDS-P-littoralis_Contig122:347815..3479021680789528.5581782-CDS-P-littoralis_Contig122:347815..347902Pylaiella littoralis U1_48CDSP-littoralis_Contig122 347816..347902 -
1680789528.566975-CDS-P-littoralis_Contig122:348639..3487651680789528.566975-CDS-P-littoralis_Contig122:348639..348765Pylaiella littoralis U1_48CDSP-littoralis_Contig122 348640..348765 -
1680789528.5761461-CDS-P-littoralis_Contig122:349346..3495221680789528.5761461-CDS-P-littoralis_Contig122:349346..349522Pylaiella littoralis U1_48CDSP-littoralis_Contig122 349347..349522 -
1680789528.585711-CDS-P-littoralis_Contig122:352829..3528531680789528.585711-CDS-P-littoralis_Contig122:352829..352853Pylaiella littoralis U1_48CDSP-littoralis_Contig122 352830..352853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.116.2

>prot_P-littoralis_Contig122.116.2 ID=prot_P-littoralis_Contig122.116.2|Name=mRNA_P-littoralis_Contig122.116.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=266bp
MASVSAQQGAAAATSMRMAAGEGSPCSRSEALGTLGAALLGAAVVGTGVP
APASAASLAEANKKLSQFDLPPVVNVPDGFNTLVEGYGKDGALKNSLGSS
NRDPILVTWNYPKGWVVSRPNTDTNKEAGTVSTGDYGRGDSATLFVGPKS
LIGGSSLSNKETMEGVVKKALSQKGENQFQSFKLKSVKDGATDFASNKYY
IADFQYELLTGAGFTVERKGVASVAQVGNSVNAVVGATTANRAKTVKPQL
QEIAGSFRVYEGKFD*
back to top

mRNA from alignment at P-littoralis_Contig122:343651..352925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.116.2 ID=mRNA_P-littoralis_Contig122.116.2|Name=mRNA_P-littoralis_Contig122.116.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9275bp|location=Sequence derived from alignment at P-littoralis_Contig122:343651..352925- (Pylaiella littoralis U1_48)
AAGGCAGCAACATTTACGGTAGCAGCTTGCTGGGTGAGCGGGACCCAGGC GTTTGTCGTGCCTGGCGCACCCATGGCTTCTGTATCGGCGCAACAGGTAT GAGACAAGCCAAACTATTTTGGCTCATATATACGTATTCTTTACCGCTTG TTGTGTATGTGTTGTAGGAACACAAAAAACATGTCACATGTCACACCAAA AGACACAAAGATGAAAGATAACCTTGTCCTGCTGCCTGGCAGGATGATGA GGTTTTTGCTTGTGTGCGAGGGAGGCAACAGCAGCCGTAGTTATTGATGT GTCTGGCTGGTTTGTTGCATGCATCTGCTCTAGCCAAAAAGGAGAGCGAT CACTGCGCCAGCCCAGGATGCACAGGCTCCGATGTACAGGTACATAGCTG AGCTTCCTTCTGTGAACAAAACCAAGCAGCTGCTGCTGCTCGCGGCGCAC AGAAATTCGCAACGTATGTTTCCGGGTCCAGCTGTTCGTGAAGTGTGTGT CAGAAAAAGGTGCCCATCATGTGTACCGTCTACCAGCAGAGAGGCTGAGC GTCCGTGCAATATCTACCGCACTTACTGCTACAGCAGTATACTTGATGGT ATGGCACTTGTAATGCTGTTTTGCCACACGCGACCTCAACCGTCGAAGAT GCATCCGATACCGCTGGTTACGGCACGTTGCTGTGTAGACTATCGCCGTT CAAGAAGCCTCAGGATTATACGTAGCCGTCCACGAAGTAGAGATTAAATC GAAGGATGCAGATACTACTGCGACGGTATAACGGAGTACTGCTGTATGCA TCCTGTCATGCTGTGATGTAAAGGCGAAAGGTGCTCAATCCGTACTCAGC ATTTCAGCAATCTGTACCCAGCAGGTACCTGATCTTGCATTACAGCATGT GCTGCTACCCCCTGTTTCGTCAGTAGCTGTTCTATACTCGTACTCCTGGT GTTCGCAAAGCACTCCTGGTGTACAGCAGTACTGCTGTACGCCAATTCTG AAGCACGCAGCATGTACCGGCCATCTCTTGAGAAACCGAAACACATTGCC CACAGCCTGACTTTGTTAAGCGTGGCGAAGAGTGGTAATGGGCCATGATA CGAGCAGCTTATGATGACGATATTACTTGAAGCACAAATGGACGTACTTT AAACATTCGTATATACAAGTACCGGTACTGCTGTAGGACTCGTGTGTGGG CACTTTGATCGCTGGACTTCCTGAACTTGCTTGTTGTGTCTTTTTGTGGA AAACGAAGCCGGGAATGGCCGGGATCACACAATACGACGAAAGCCTGCTG CGCCCACTTTTCTCCCTCTCTCGCTTGCCGTACATCCACCTGCGTGCTGT ACCATTCCGCTAGGTCACAACCGGGTCTACCGGTATGTAGTGTGTGTGGG GAAAAGCTTTCATTGTTCTCATGCATGCATAAAAAGAGATGATGCCACTT TCACGCATCATACAGGCGGCGGGGGTGTTTCCGACACAGGTGTCCAAGAT TTTTTGGCGTACTCTATATAAGTCCTGCTTTTTTCTCACTCAACAAAAAC ACAAATTGGATGCTCTTTTTCTGCGATTGTTTCGCGAGCGCGTCATACAA AAATCGACTCCAAAGAGTCGACGAGGGAAGGCGATGGCCGAACCCTTCTC GTGATATTAAAAAAAAATGAAACAAGCGTTGTTGGAGGAAAAGAGAAGAA AGAAAAGAAAATCTCCCGTGATGGCTTTTCTCTCCGTCTGAGTTACCCTG GCTGGTGCGCCTAACTTGTACCTGACGGTGTAGACTGGCATCCAAGGTAG ATTGGATGACAACACTCCTCAACACACACACACTGCTGCTGCTGCTGCTG CTGCTGCTGCTGTACAGCACGAAACCCGACGTCTGCGTACATCAAAACTT GCTGCAGAAGTGTATCGTCTCATTTTGCCTTTCTCGCCAGCGTGAAAAAC GCCTTTTTCGGGGGACAACCTCTAGTGCTCATCCTGAGCAGTGCGTCCCC TACACGCTACCGTGACCCCCCTTAGGACTGATCAGGGGTTTGGAGACGCC TCGGAGAAACTTTTCTCCCCAGATTCTTTGTCGCGATCTCCCTTGCACTG TTTGCAGCTTGATCTCCTGGTGCTGGGTTCCTCACAGGAGGATTTCGTAG AGTGGCCTCCTTTTTTTTTGTGGTCGGGCAAAGATGGTCCTTTTCGTACT TTCAAGGGGGGCGCACGCAGCGAACACACGCGATCTCGCCGCTCTCAGAG TGCGCATCCGCTATCAAAGCTCACCAGCACGCTTGCCACAGTTTGAACTT AATACTTAACAGAGAGGGGCCGCGACGATAGGCTGGATTGATTGATTTGG AAAGCAGAATGGTCGCCCGGCCGCCCTCCCGCCGCCGACAGAGCTCGCTA CGCGTATTCCCTGGTTGTTGTTGTTGTTGATTCTCACATTAGCTCACTAC CGCCGCAGTCTAGCCCGTGCTACTCTGTGTTGCCAGAACCCCTATATTTT TCATGTTGTCCACCCAAGATGCCGACCTTTCCTTTCCCTTTCTACAAGAT TTTTCTGTGATCTGCACTTTTCAAGCCCCTCGAGGCGGAGGTTTCGGCCT CTCTAGCGCACCCCCGGCTGCTGCTATCTGCTGTTCTCTCCACCCACACG AACCTGTCTACTACTTGAAAGGATGCGGTTGGCGTTGCGGCATACGTGGT GTAAGGTGCTCACCGGCGTACCCATGTGTGCTGCTGTTGGTATGTTCGTT TGTTCATTGCTGGCACATGCTGTATGTAGCGCATCAACCATCCGCTCTCT ACTGTTGAGTAGTTGCTGGTCCCTGTTGTTCTATCACACACGCACACAAC CTGCACTGCTGACGCTGTGTTATCAGGAGGTGTGGATACATGTCTGAAAG TCCGTTTCACCTACTATGACGTTATCCCTGTAAACGACGTGTCATGTTGC ATGAAAGGCTCGTTGGCGTACTCCAGTTGTTTTGTTGTTTTTGTTGTCTG CACTTGAGGTGCTGCTTTGTACAACTGGTTTCGTGGATGGGTTTGCAGCG CTTTGCTACAGCACTCAGCATCGAGCAGATCGAACCGAATAAAATAAAAT AAAATAAAGGTTTCAGATGCTCAATTTTCACGCTCAACCCTCCGCAAGCT ATAAGACTCAACACGGCCAAACAAAAATTAAAATCGCATTCTGCAGCATT TGTAGTTAGGCTTGTTGTTCGGGACGGTAAACAAGACACAGTCAGTCACA TCCGGAATCTGTCTGGCGTCGTATGATAGGATACGGGGGGTGAAGCACCG TCAAAAAGTTGCCACCTTTCCAGAATTGACACTTATGCCGAAAAGCCTGG CCTGTTCGTCACAGCCCGACGTCCTTCGTGTTTACGTTATGGTTACGTGC TAGGGGGCCGCAGCGGCAACATCCATGCGCATGGCGGCGGGGGAGGGTTC GCCCTGCTCCCGGTCGGAGGCCTTGGGAACCCTCGGCGCGGCGCTCTTGG GGGCGGCGGTTGTCGGCACCGGTGTCCCCGCTCCTGCCTCGGCGGCGTCC CTTGCCGAAGCGAACAAGAAGCTCAGCCAGTGAGTTCCACGATTTTGGCT CGGGTTCGTTCTTGTGCTACCACAGTACCGTCGAGAATAAACTTGTACTT CGAAGCACGAAAGAAAAGTGTGTCTTTCATGTACAGTATCATATGTACGA AGCGTTTTTTTTTTTTAAGGGAAGGCGCCCTGGGTGAGGGACCCAACGTT GGTCCCGTCTGTACCGGCAGTTATTTGTACTGCTGTGACGTTTTTCATTA TAAAAGATGAGCCAGTTGAATGCTTGTTCGACTTCTCCTTTCTACGGAAA GAGACCCGTTCAACACTCGTTCGCGTCTCGGCTGTGAACGCGAAACACAA ATGTCCGGAAGATTCGTGCAGGCATGCAGCTTCTGCTTCTGTATTCGTAC ATGTCATGGAGTGCGTCCTATACCGGTTGGAAGCGCACTCGGCGTATGTG GTGCTTGAAATTTGCCGGGAATCATTTGAGTGACATCTCTGGACACATCA TGTGGGAGGGCGCGCGCGCCCGTACACACACAAGCACACTACAGTTGTAT TTTGGGGTAGGCACCACAGTATGTAAAGCGACTCGGCGTGACGAACTAAC GCGAATGCAGGTTTGACCTCCCTCCCGTGGTGAACGTGCCCGACGGGTTC AACACCTTGGTGGAGGGATACGGGAAGGACGGTGCCCTCAAAAACTCTCT CGGCTCCAGCAACCGGGATCCGATCCTCGTCACCTGGTGAGAGCGACAGC GAGGCCCATGCTGCTGCTGCTCCCAATTGCTCTATCGCCCACAGCACAAG CATGTAGTTGCGTATCCGAAAATCGTGAGCTTTGAGCACGCATTGTCATC CGTAGTTGGTACGTGTGTCCGTGACAGCGAGACAGACCCCAACACCCACC TGTAGTGTTTGCCCGTTGTAGTGTTGGGGGCTGTCTCGCTCTGAAGATTT GTGAGGCTATATTTTGGCCTCTTGTTGGTTCTTGCGATTGCAACGAATTT GTTTTTTTTGTATTTGTCTTTTTCTAGCCCTCTCGTTGTCGCGGGTTCGC GATTGCAACGAATGCCGAGTTCGCCACATCGTATCACTCGCGTTTGCCAT GCGGGTAGCCACGAGAGCCGTCCCCCTCGTGCTGGTATGGCCAAAGGACG GGACATTGAACTCGCAACCCCGGAACGGTTCCAGGGCCGACGACGACAAC GCGAACAACAGCGATCACAGCAGGGGAGCCAAACCGCCCGGTCTACGTGA AAAAAAAGAAGTACTCTGTACACCCGCACTGCCAGCCGGCTTTGACTTGT TGAAAACCTTTGACCGCGGGAGAAGGGTCTTGATGTAACTTGCTTCGTTA TACACGCTCTCTGCCTCTTTGCCTACCCCCCCTGACTCTGCCTCTCTGCC TGCCTCTGTCTTGGTCTGTTGTCGGGATCTCTCCATCTCCTCTCTCCCTG TTCGGGTGCCGTGTTCTATACAGGAACTACCCTAAGGGGTGGGTCGTTTC GAGGCCCAACACGGACACCAACAAGGAGGCCGGGACCGTTTCCACGGGTG ACTACGGCAGGTGCTGATTGATTGATGATTGACTGATTGATTTCGCAGTC GGGATAAAACGGATTTGCTACGATTGCATCATATCAGACGAAGGTCATTG GGTCATAAGGCTGCTGTCCGACCGAGGTTGCTTTTTTACATGTTTCACGT TCTAGATCAGGGTACGGGTACAGTAGTGATACCCGTCGTCAGTTTATCCA TCAAGCGCGATTGGCCTGGGTGCATCACGCCAGGGAAAAAACAGGCCCGC CGCCGAACTTTCCCTCCCTGCCTAAGCTGTAAACACTACGGTCGATTCGG CGGGTGCGCTCCGGACGCGTGGCGGCACACGCACATGCCTCGTCGCTTTA GGGGGGCGATCGAGGAAGGATTTATCTCTACAAATCGGTAGAATATCATG CATGCTCCTAGGGATCAATACATATACGACCAGCGAGCGGGAACAACACA CGAGCGATATTGTACAACATGCAAGCGACACTGCACCGACTTTCCGTTTG GCTGTACTCGAAATGACCGAAATCCAAAGCCCGTTTTTTCCATGTGTATT TGATTTTGCAAAGTCCTGCTTCTATCGGTCGTTTTTTGCGCACCTGTCCA TCGTGTTTTGTAGGGGAGATTCGGCGACGCTTTTCGTGGGGCCCAAGTCT CTGATCGGGGGATCTAGCCTCTCCAACAAGGAAACGATGGAAGGTGTTGT GAAAAAGGCTCTGTCGCAGAAGGTCAGTGCAGAAATGTAATCTATTTTTT AGTGGACAGACGTGTAATGATACGGTAAATGCCAGGTACGAAGTATCGTT TTTGCTGTTATGGTCGTGCATTCGTACGGAAGCGACCGAAGTCTCAGATT CACTGATTCAAGTTTTGCGTAGGCGTTTTTTGTTCGAATCCTGTCGCTGT TTGATGCCGCTGGCACATAATCGGAAACGCTCCATTACGGCTCTGCGAAA ATAGGCATAATACAAAACCATCGTTACTTGGTACATTTATCATGGTTTTT ACGTTTCCGGTACTACTGTAGTATGATCACATTTAGTGCTTGGAAAGTGA CTTCTACAACGAAAGTGCTTATAACACACCGATACAGTAGCAACAATGTC GAGATTAGGGGGACCCATTAACAACTGCTGGCAAACGGCTCATTGTTTTC TCGTCGGTATCATTCCAGGTAAACTTCCGTTGGCATATTTCAGAACTTTT GGACACACTCCGGTATAGCTTTTACACCAATGTATTTGCTGTCAGTGGCC ATGAGCGCCACGGTGCGTACCGCCGCTGGTACTTTAGCTAGTGCGAGGGA AACGCCCACTTACCGCCCTGTCCCAACCACCCGCCTGTTCTTTCTTTTTT CGGTTAACGATCAGGGCGAGAACCAGTTCCAAAGCTTTAAGCTCAAGAGC GTTAAGGATGGAGCCACGGAGTGAGTTTCGCCCTGCAATTGTTGGCGTCT TGCCGCACGTGTGTCGTGCCTCTGGTACTGTCGTCTGGTTTGGCTTGGCG TCTCACCTGTGGATGCATGTGTCAAGCATATGAGATTTATCATCCTGCGT ATCATTTTGGAAGCCGTGTCACCACCATACCAATACCGCCGTTGATGTTG GTTGGGTTGTGGTTGTGATTGTTGTTGTTGTTGGTATTGCATGTTGCTGT TTCTTGATTTCGTTTTGTTATTATTTCATGCTACAGCCTGGCCAAATTTT TCTTCTTGTTCTTGTTGCTGATGACGATAATCTCGTGCTCTGTTTTGTCA CTGCTTTCGTGTTGTCCGTAACCCGACGATATCCAACCGCCTTTGATGTT CGTGATACAATCGCCGTCATGAAATAGCTTCGCGAGCAACAAGTACTACA TCGCCGACTTCCAGTACGAGCTGCTAACGGGGGCAGGCTTCACTGTGGAG AGGAAGGGCGTCGCATCTGTGGCCCAGGTGATCTTTTGGTGCTGCTAGTT GTGGTCTTCAACTACAACGCCGCAGTGTTTTCGTCCCACGAAGGTGTAGA CTGACGGCTCAGAATAAATGGGGATGGCAAAGATACACACAATGAATTGG ATGACAATACACGCACACACAACCGGTAGCCCTGCGTGTTAAGATGGAGA AACTTGAAACCCTCTGGCACCTAAAATACGTAGGATTTGAGTTCGAATCA ATCCCGATGTGAGCTGAGCTTTTTTTCAGGCTTGAGCCTTGGAGTGGAAA ACGGTCGTCCCGCGAGTAAACGAAACTCGTCTCAATAATATACGAAGTAT ATACTTCCTCTGTATCATAAGTCTGTGCCGTTATGTTTTTACGCCCCCCT CAACGGTGTCCGATGTCTTCGGCGATAATTTTTTCGAAATCTTCGGAGTT TTTTGGGTTGAAACACATATATCTTTTCTTCTTGCGCACTACCCTGCGCA TGGGCTAGCGGCTAACAAAAAAGTAGTCAGGCCAAAAATGGCCGTATTTA ACCCTTTCCAGAGGTGGAGTGGGGGGCGGGGGCAAAAAAAAAACCCAATG CAATCCCCCCCAAAATTATCCCTAACCCTGAACCTAGCCCCCCTACCTCA AAGATTCATGTCGAGTCCCTCCTTACTAAAATCAGTATAATAGTGACGCG ACGCTAAAACCAAGACACTTGGGTTTGCCACACTAAAACGAAGATACTTG GGACTCATGATCTAAAAGCAAGACATCTGGCGGAATCAAAATTCTTTAAA TGGGTCAAAATGGGCATATTTTGACTTCATTTTAGTATAAACAACTGGCT TTTTTTTTGTTTTGTTTTTTGCATCAGCTTCTTTGAGACTTCATCTTTCG AATGAACCTAAGTATAGGATGATCGAAACAGTATGGATGCGCAAACAATT ACACGCCCATAACAGCCCAGACTTATGATACAGAGGAAGTATCAACGAGG AAAAGGGAAAGTCGAACCCTTCTCGCAATGCTGTAAGACATAGAGAGGAG AGCACCGCACGTAATGGTGGAGTTTATAGCAAAAAACCTCAACGTTTGTT TTGACCTTCCTCCTGAGTGGCGCCCGCTGATGCGCCCAAAGATTTACCAA ATCTGTCAGGGAGACTGGTGCCCTCCACACACAGCGATACGATCCCTCAG GTTCTTTCATTTTTGCGCACCGGTCTCAAGCTAAGATATCGTGAAGACGC GAGCGGCGAAGACACCTGCGGCAGAAGACTCGACGACACCTGCCATTGAG CGAAACAAACGACGCAAGCAAACGATCATGGCTGATGAACTACCGATCAT CTGCGGATAACACCCTACGCAGTTCACACCTCGTCTACCGAACACATTGG CACTTGCTCGGGAAATTGGGGAACCATCCTCACGGAGTGTTCTCTTGCCA GCGATTGAAGTCAGCGGCGTTCTGTGTCGTGTTTCGCCGCGTGTTCCTTT TGTGTCCGCGCCTCATCAGGTTGGTAACTCCGTTAACGCGGTGGTCGGCG CAACAACCGCAAACCGCGCCAAGACGGTCAAGCCACAGCTGCAGGAGATC GCCGGCAGCTTCCGGGTCTACGAAGGGAAATTCGACTGATTGACCTTCTG TTTAGAGTACATCGTTTAGAGTGGATATAGCCTTCTTTGTCTAGAGCGAC AAGCAGATGAGCAGGAGCCGTGATGGTGAAGGAAGGAGGCGTTCTTTCAT CGCTTGGTGAGACTTGCCGACTTAGTTTGTTCGGCGCTAGGAGAGTTTTG ATGACTGCCTCAAGGTACGCAGTCATGCAACGCGTTGTGCTTCATTTAGT TAGAATAGTGTCAGAAGTGTGGTCAACGATTCGTCAGATGACTCTTTTTT CCAATATTTCTGTTGGATATTTGGTGCAAGGTGCAGTCCCCCCGTGTGTG GGAGGATTGTGGGGTCTCTTGGACGGTAGTGGCGCTGGGCCGTGGCGCAG GGCAGTGTGCTGGAGAGATAGATGATAGAACTGTCAGCGCTGACTTGATT AATTAGCCAGGCCCGGAGGCCTGGTAGGCCCGAAGGCTGGATGGAACGCA AGGCCAAGTCGATCAGGAGAAGTAATCAAGACGACGACTGCTGTTGTTGA ACTGACGACTGACGCACACAAACACGCAGCTTCTAGAAAAGGCCACCAAT GGTATCCCACAACACGCACAACCATACACGTAACCCCCCGCAACGTTCCA GAATATTCCAGGATCTCCGTAGACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig122:343651..352925-

>mRNA_P-littoralis_Contig122.116.2 ID=mRNA_P-littoralis_Contig122.116.2|Name=mRNA_P-littoralis_Contig122.116.2|organism=Pylaiella littoralis U1_48|type=CDS|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig122:343651..352925- (Pylaiella littoralis U1_48)
ATGGCTTCTGTATCGGCGCAACAGGGGGCCGCAGCGGCAACATCCATGCG
CATGGCGGCGGGGGAGGGTTCGCCCTGCTCCCGGTCGGAGGCCTTGGGAA
CCCTCGGCGCGGCGCTCTTGGGGGCGGCGGTTGTCGGCACCGGTGTCCCC
GCTCCTGCCTCGGCGGCGTCCCTTGCCGAAGCGAACAAGAAGCTCAGCCA
GTTTGACCTCCCTCCCGTGGTGAACGTGCCCGACGGGTTCAACACCTTGG
TGGAGGGATACGGGAAGGACGGTGCCCTCAAAAACTCTCTCGGCTCCAGC
AACCGGGATCCGATCCTCGTCACCTGGAACTACCCTAAGGGGTGGGTCGT
TTCGAGGCCCAACACGGACACCAACAAGGAGGCCGGGACCGTTTCCACGG
GTGACTACGGCAGGGGAGATTCGGCGACGCTTTTCGTGGGGCCCAAGTCT
CTGATCGGGGGATCTAGCCTCTCCAACAAGGAAACGATGGAAGGTGTTGT
GAAAAAGGCTCTGTCGCAGAAGGGCGAGAACCAGTTCCAAAGCTTTAAGC
TCAAGAGCGTTAAGGATGGAGCCACGGACTTCGCGAGCAACAAGTACTAC
ATCGCCGACTTCCAGTACGAGCTGCTAACGGGGGCAGGCTTCACTGTGGA
GAGGAAGGGCGTCGCATCTGTGGCCCAGGTTGGTAACTCCGTTAACGCGG
TGGTCGGCGCAACAACCGCAAACCGCGCCAAGACGGTCAAGCCACAGCTG
CAGGAGATCGCCGGCAGCTTCCGGGTCTACGAAGGGAAATTCGACTGA
back to top