mRNA_P-littoralis_Contig122.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.11.1
Unique NamemRNA_P-littoralis_Contig122.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 4.410e-118
Identity = 190/289 (65.74%), Postives = 220/289 (76.12%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            G+  W  A  +   +  G        FAE +    G+      GR+ P+PVS+K   FD  E     PFRELVGSLM  ATQTRPDI+NAVRAVARYC SP  +HW AA+GILGYV RTS   ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SIT+VP+ FQHADFLTK++  E+F  HR+FVM+L
Sbjct:   36 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 1.080e-117
Identity = 190/289 (65.74%), Postives = 220/289 (76.12%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            G+  W  A  +   +  G        FAE +    G+      GR+ P+PVS+K   FD  E +   PFRELVGSLM  ATQTRPDI+NAVRAVARYC SP  +HW AA+GILGYV RTS   ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+  MPCIPVFEDN+GAIQ+  NPITNSNSKHIDVR HF+RELV R E+SITHVP+QFQHADFLTK++  E+F  HR+FVM+L
Sbjct:   91 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 1.640e-117
Identity = 188/263 (71.48%), Postives = 215/263 (81.75%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            +AE +    GV      G+  P+PV +K   FD +EE V++PFREL+GSLM  ATQTRPDI+NAVRAVARYC SP  IHW A +GILGYV RTS   ITFRRGS+ GL+ ++F DADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L    FEFHRN+VMS+
Sbjct:  179 YAEELGMEFGV----EYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 1.630e-116
Identity = 190/289 (65.74%), Postives = 219/289 (75.78%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            G+  W  A  +   +  G        FAE +    G+      GR+ P+PVS+K   FD  E     PFRELVGSLM  ATQTRPDI+NAVRAVARYC SP  +HW AA+GILGYV RTS   ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SITHVP+ FQHADFLTK++  E+   HR+FVM+L
Sbjct:  153 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 3.620e-115
Identity = 188/263 (71.48%), Postives = 215/263 (81.75%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            +AE +    GV      G+  P+PV +K   FD +EE V++PFREL+GSLM  ATQTRPDI+NAVRAVARYC SP  IHW A +GILGYV RTS   ITFRRGS+ GL+ ++F DADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L    FEFHRN+VMS+
Sbjct:  353 YAEELGMEFGV----EYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 4.950e-114
Identity = 180/246 (73.17%), Postives = 206/246 (83.74%), Query Frame = 3
Query: 1560 GRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            G+  P+PV +K   FD +EE V++PFREL+GSLM  ATQTRPDI+NAVRAVARYC SP  IHW A +GILGYV RTS   ITFRRGS+ GL+ ++FADADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQV RF+ PE GMPCIPV EDN+GAIQLA+NPI+NS SKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L    FE HRN+VMS+
Sbjct:    8 GKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 8.270e-112
Identity = 181/259 (69.88%), Postives = 205/259 (79.15%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNF 2285
            FAE +    GV      G++ P+PVS+K   FD  E     PFRELVGSLM  ATQTRPDI+NAVRAVARYC SP  +HW AA+GILGYV RTS   ITF RG + G++ Q+F DADYASK  D RSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SITHV S+FQHADFLTK++  E+F  HR+F
Sbjct:  154 FAEELAAEYGV----EWGKSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.180e-111
Identity = 180/263 (68.44%), Postives = 209/263 (79.47%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
            F + +    GV     VG + PM   +K   FD +EEA  FPFRELVGSLM  ATQTRPDI+NAVRAVARYC SP  +HW AA+GILGY +RTS   I+F+RG++ G + Q +ADAD+ASKA DRRSVSGG+V CGGG VSWFSRTQKCVTLSTTE  YVAL +V KE+LFLRQVWRFM P+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HFLRELV R E+S+ HVPS +Q ADFLTK LP + FE HR+FVM+L
Sbjct:   92 FTDELAAEYGV----AVGTSVPMSSGVKLSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESHRDFVMNL 350          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 3.390e-111
Identity = 176/245 (71.84%), Postives = 201/245 (82.04%), Query Frame = 3
Query: 1560 GRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMS 2294
            G+    PV +K   FD +EE V++PFREL+GSLM  ATQTRP+I+NA RAVARYC SP  IHW A +GILGYV RTS   ITF RGS+ GL+ ++FADADYASKA DRRSVSGG VMCG GC+SWFSRTQ+CVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKH DVR HF+ ELV R E+SI +V S +QHADFLTK+L    FEFHRNFVMS
Sbjct:   47 GKEILFPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMS 291          
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 5.310e-111
Identity = 179/249 (71.89%), Postives = 204/249 (81.93%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVA-RGELSITHVPSQFQHADFLTKSL 2252
            +AE +    GV      G+  P+PV MK   FD +EE V++PFREL+GSLM  ATQTRPDI+NAVRAVARYC SP  IHW A +GILGYV RTS   ITFRRGS+ GL+ ++FADADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSN KHIDVR HF+RELV  R E+SI HV S +QHADFLT++L
Sbjct:   78 YAEELGMEFGV----EYGKEIPLPVGMKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRAL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP70_9PHAE4.410e-11865.74Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE1.080e-11765.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.640e-11771.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.630e-11665.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.620e-11571.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTK6_9PHAE4.950e-11473.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3H4_9PHAE8.270e-11269.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE1.180e-11168.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE3.390e-11171.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR24_9PHAE5.310e-11171.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:47308..51488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV18849-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size4181
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-32
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size459
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.8152347-UTR-P-littoralis_Contig122:47307..491481680789525.8152347-UTR-P-littoralis_Contig122:47307..49148Pylaiella littoralis U1_48UTRP-littoralis_Contig122 47308..49148 +
1680789525.8389604-UTR-P-littoralis_Contig122:49607..514881680789525.8389604-UTR-P-littoralis_Contig122:49607..51488Pylaiella littoralis U1_48UTRP-littoralis_Contig122 49608..51488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.8273597-CDS-P-littoralis_Contig122:49148..496071680789525.8273597-CDS-P-littoralis_Contig122:49148..49607Pylaiella littoralis U1_48CDSP-littoralis_Contig122 49149..49607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.11.1prot_P-littoralis_Contig122.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 49149..49607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.11.1

>prot_P-littoralis_Contig122.11.1 ID=prot_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
MFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVA
LAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSK
HIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVM
SL*
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mRNA from alignment at P-littoralis_Contig122:47308..51488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.11.1 ID=mRNA_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4181bp|location=Sequence derived from alignment at P-littoralis_Contig122:47308..51488+ (Pylaiella littoralis U1_48)
GTGAAGGTGCTCAAGGCCACCACGGGCGCTGCCTGTCTGAGCAACAATGT CGTCTGGACCGTGCCGCGGGTGCCGCTGCTGCCGTCGATGCCGGACGACG GGGGGGTAATGCGGTTTCCGCCGCCGCACCGACGCAGGATGTCACGGTGG TGTTCAGCCTTCTGCGAAGCCGCTGCCGTCTGCCCAGCCTTCTGCCCCGG CACCACAGCCTCCCCCGCCAACGCCTTCTCTGCGATCTCCTTCGCTGTCG CTCTTCGATGAAGCTGATGGGCCTTCGCCCATTTCCGCCGCTTCATCGTC AAACGCCGATTCCATACCTTCCGCGCGACTGCCGTCCCACTCCCTTTCGC CGCTGCCTTCCAATGTGGTTCGCGAGCTGACCTTGGAGCGTGATCCGCGG ATGGCAGGAAATACTCGGTCGAGGACTGCACAATGGATCGCCGCACGGGC CGAGCGTCAGCCGCAGCGTGAATCATCGCCGTCGTCTTCGTCGGAGGAGA GGTCGCTCGTTCATTAGTTAGGATTGGCGTCCATGGTGGAGAACCCGGCT CTACTCACCGTCCTTGCCACGCGCGATGCTGTAGATGCCGGCCATGAGCG GCTTATCCCGGAGGAAAAAGAGGGAGGCGTGCGAGCAGGGGGGCAGCGGG GGTTGCTGATCGTCTGTGCTACACTCATGGCGACGCGTGAGGACCTCAAC TCCGCTCGTCTCCAGCAACGGCCACCGCACGATCGACCGGAGCTTCCGCA GTGCCAGGCGAGCGATCTCAAGGTACCGAAGAGCCACAAGGAGGCGATGC GTTATGAACACTCGGGGCTATGGATGGATTCGATGGCGAGGGAGCACTAT GGTCTGCTTGATGCGGGAATGTTCGAGCCGGTGTAGCAACCAGTAGAAAA TTACATCCATGCGAAGTGGGTGTTTGATTGGAAAGCAGATGAGTATGGAT GGCCGACCAAAATGAAATCACGACTTGTAGCGAGGGGAGATATGCAGAAA GCGGACATTGATTTTGGAGAGTTGTATTCCCCCACCGTTGCGGTATCAAG TATTCGTCTGTTGGCTGCGTTTGCATGTGAGAAAAATCTTGGACTTCGCC ATTTTGACATTGAGCAGGCTTTCGTGCAGTCTGAGTTGGAGGAAGATGTG TTAATGAAAGTGCCTCCTGGATGCGGTAGACTGGTTTGGTAGTGAAACTA GGCAAGAGTTTGTACGGTCTGCGGCAAGCATCGAGGAATTGGCATTCCCA TCTGACGGAGCGTTTGTTGATTCTGGGTTTTCTACAGTGTTTGGCGGATG TGTGTGTGTTTCGTTTGATTGAAGATGGGTGTGTGGTTATCACTATTGTC GTACACGTAGATAACATCTTTGCGGTAGGAGATCAGGAGAGGTGTGACCT TTTTGGGAGGGACCTGAACGAATACGTACCGGTCAAGAACCTTGGGGAGT TGCGTTGGTATTCTGGATGTTTTTATGAGAGGGATCTTGAGAGAGGGACG CTAACGATTTCGCAGAAAACGTACGCGGAAGAGTTGGCGTCTGAATACGA CGTAGAGTGGGAAGGAATACTCCGATGCCCGTGAGCATGAAGCGTGAAGC TTTTGATGTAGAAGAGGAGGCGGTGACTTTTCCGTTTCGGGAGTTGGTTG GATCGCTGATGGGGTTTGCCACTCAAACCAGGCCAGATATCTCGAACGCG GTTCGTGCGGTAGCAAGGTATTGTGTTTCACCTTAGAGTATCCATTGGAG TGCTGCGATTGGTATCTTGGGGTACGTGGAGCGTACGAGTTCACCGGAAA TTACCTTTCGAAGGGGTAGTCTTGTAGGATTGAATTTTCAAATGTTCGCG GATGCCGACTATGCCAGTAAGGCGACAGACAGGAGGTCGGTATCAGGGGG GCTGGTCATGTGTGGAGGTGGATGTGTGTCTTGGTTTTCACGAACGCAGA AGTGTGTGACACTTTCGACGACAGAGGTAGAGTATGTTGCGCTTGCTGAA GTCACCAAGGAAGTTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTCGCC AGAGGTTGGAATGCCGTGCATACCTGTTTTTGAGGACAATGAGGGAGCTA TTCAACTTGCCAAGAACCCCATCACCAACTCAAACTCGAAGCACATTGAT GTGCGACAACATTTTCTTCGGGAACTTGTAGCAAGGGGGGAGCTTTCCAT TACCCATGTGCCGTCTCAGTTTCAGCATGCAGACTTTCTCACGAAATCAT TGCCGGTGGAAACTTTCGAATTTCACCGTAATTTTGTGATGAGCTTGTGA CGGCGCTTGTTTTATTTGTTTAATTTTTTGTCTCCTGCACGAGTGTTGGT TCTTGCTTTACTTGTGTTGGACGGCGTGATCACTGCCTTTGCCATGATTG CAGTGTTCGGTTGTTTGCTTGTATTTCAGTTCGTGTTTGATTTGTTTCCA GATGGAGTACTTGTGTTGGAAATTGCATGATTGATTTTCAAATTCAGTGC TTCGTGTGTTGGGATTTTTATACTTTGACTTGTTTTGGTTCTTGGGATGA ACTATTCTGACTTGGCCACGAGCAGGGGGGCTGATCGAATTACTCGTGCG GCAAGTCACATAGACGTAATCTCCAGAGATTTGGATGGGTTTCATATATG GGTAGGAGGCGTTACGTTGCGGATGAATTATGGCGTGCAGAATTGTGTGA CGTGATGATCCGAGAGAGGCTGTGGCATGTGCCGTCTCTCTCACTCGATT GTATGATACGACACCAAGACGGTCTATCACGACTGCTCTACCCTGTCCCC GAGCATCGAGCAAACCAGGCACGAAGCATTCTAGACGCAGAAAATAAGAA AAAAAAAAAAACCCGGCATCCCGTGAATTTTTACCTTTGGTAGTTGTTTT TCGAAAACTTTCACCCGGGGTTGCTTGATTTTCCAACACTTTGTTGTGCT TTCGGTATCGTTGCACATGGTTGAAGGGGGTGACACGTCTTTGTGTTCGG CCCTTGCACGGCATCCCCACGTGCTGTCCTCCTTCCTTTTCCTCCTGAAT ACTTGCTCGTATATCTTGTCCATGGCGGGTTCAGCAAACTCTAGAGAGAG AGAGAGGGCGCGCGTGTGTGTGTCCGTCTGCTGTGTGCGTGCTTTATGTA TCAATTTGTTTTTTGTGCCTTCCCCCCAGGGAAGAGTATCCGCCGGGGAA GATTCGAAAAATAAATGTCCCCCCCTCCCCCGTCAGTTTACCCCCGAGGG GTCGTATTTCCAAAAAAAATGCCCTCTCCGGGAGCAAAAGAAATGTTTTT GCGGTACTCATTTTGCGGTACTCATCTAACATTGAGGTTCCCGAAATCAA ACTAAACCGATCTTGCGATGCTAGTTTATGTTTTGTTACCGTTTGTTTCA TATATCCAGTCATACGACTCCCCCCTTAAAGTTGTAGACACACTTTCCTG ACCCCGATCCCGACCCCTGATCCCCACCCCAGCGCGTGCTCCCCATCACC CACTACCCGCCTTTCTTTTGCTTCGTATCCCACCACCCACCACGCAGGGA CTGAGCACCAACCGCGTGTTCGATCATGTGGTGGCCGCTGTGGATGGTTT GTTCCTTAGATGCAAGAAGGTCGATGGAGTGAAGCCTTCTGAGGGGTCCG CGGAGACGGGCAAGGGGCGGCCGACCCTCACCCCTGACGGCAGGCTAGGG GCATCCTTCTAGAGCAGCGCGCCGGCACCGTCCAGAAGCGGGGAGTCGCC GGCGCGGCTTGCTCTGCGGATGATTTTGGAGGACGGCAAGCAATGGCGCC CGGAGTACAACAGGCTGCGCAACTCGTAAATACTGCACGGGTCGTATGGT GGCTGGCGTTTGCGATGTTTGGTTTTGGTAGCGGGTAGAGGGCAGCGGAG CTGGCAGCAGATAGAGGGGGCGGAGCTTGGTTCTGCGTGCACGGGGGGGT AACGGCATCGTCTCGTGTGTTGTTGTGAATGCTTGGTTGAGCGGATTTGT CCCCCGCTTTAGTTTTTCCTTCGGGATATATGGTACAGGCAGAAGAATTT TTCCAAAGGGGGTACCGGTTTTTTCTCCGTCATTTTTGGGAGTTGACAGG TGAAACAAACTTTTCCAGAATCGCGCGGCCGAGAGGAACTCAAAACCGGT CTTGAAAAAAAATTCCATGAACAATGGCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:47308..51488+

>mRNA_P-littoralis_Contig122.11.1 ID=mRNA_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig122:47308..51488+ (Pylaiella littoralis U1_48)
ATGTTCGCGGATGCCGACTATGCCAGTAAGGCGACAGACAGGAGGTCGGT
ATCAGGGGGGCTGGTCATGTGTGGAGGTGGATGTGTGTCTTGGTTTTCAC
GAACGCAGAAGTGTGTGACACTTTCGACGACAGAGGTAGAGTATGTTGCG
CTTGCTGAAGTCACCAAGGAAGTTTTGTTTTTGAGGCAGGTTTGGCGTTT
CATGTCGCCAGAGGTTGGAATGCCGTGCATACCTGTTTTTGAGGACAATG
AGGGAGCTATTCAACTTGCCAAGAACCCCATCACCAACTCAAACTCGAAG
CACATTGATGTGCGACAACATTTTCTTCGGGAACTTGTAGCAAGGGGGGA
GCTTTCCATTACCCATGTGCCGTCTCAGTTTCAGCATGCAGACTTTCTCA
CGAAATCATTGCCGGTGGAAACTTTCGAATTTCACCGTAATTTTGTGATG
AGCTTGTGA
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