mRNA_P-littoralis_Contig122.11.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 381 bits (979), Expect = 4.410e-118 Identity = 190/289 (65.74%), Postives = 220/289 (76.12%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
G+ W A + + G FAE + G+ GR+ P+PVS+K FD E PFRELVGSLM ATQTRPDI+NAVRAVARYC SP +HW AA+GILGYV RTS ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SIT+VP+ FQHADFLTK++ E+F HR+FVM+L
Sbjct: 36 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 382 bits (982), Expect = 1.080e-117 Identity = 190/289 (65.74%), Postives = 220/289 (76.12%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
G+ W A + + G FAE + G+ GR+ P+PVS+K FD E + PFRELVGSLM ATQTRPDI+NAVRAVARYC SP +HW AA+GILGYV RTS ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+ MPCIPVFEDN+GAIQ+ NPITNSNSKHIDVR HF+RELV R E+SITHVP+QFQHADFLTK++ E+F HR+FVM+L
Sbjct: 91 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 384 bits (987), Expect = 1.640e-117 Identity = 188/263 (71.48%), Postives = 215/263 (81.75%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
+AE + GV G+ P+PV +K FD +EE V++PFREL+GSLM ATQTRPDI+NAVRAVARYC SP IHW A +GILGYV RTS ITFRRGS+ GL+ ++F DADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L FEFHRN+VMS+
Sbjct: 179 YAEELGMEFGV----EYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 382 bits (980), Expect = 1.630e-116 Identity = 190/289 (65.74%), Postives = 219/289 (75.78%), Query Frame = 3
Query: 1431 GQEPWGVALVFWMFL*EGS*ERDANDFAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
G+ W A + + G FAE + G+ GR+ P+PVS+K FD E PFRELVGSLM ATQTRPDI+NAVRAVARYC SP +HW AA+GILGYV RTS ITF RG + G++ Q+F DADYASKATDRRSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA+A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SITHVP+ FQHADFLTK++ E+ HR+FVM+L
Sbjct: 153 GELRWYSACFYERDVERGLLRISQQRFAEELAAEYGI----EWGRSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 384 bits (987), Expect = 3.620e-115 Identity = 188/263 (71.48%), Postives = 215/263 (81.75%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
+AE + GV G+ P+PV +K FD +EE V++PFREL+GSLM ATQTRPDI+NAVRAVARYC SP IHW A +GILGYV RTS ITFRRGS+ GL+ ++F DADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L FEFHRN+VMS+
Sbjct: 353 YAEELGMEFGV----EYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 369 bits (947), Expect = 4.950e-114 Identity = 180/246 (73.17%), Postives = 206/246 (83.74%), Query Frame = 3
Query: 1560 GRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
G+ P+PV +K FD +EE V++PFREL+GSLM ATQTRPDI+NAVRAVARYC SP IHW A +GILGYV RTS ITFRRGS+ GL+ ++FADADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQV RF+ PE GMPCIPV EDN+GAIQLA+NPI+NS SKHIDVR HF+RELV R E+SI HV S +QHADFLTK+L FE HRN+VMS+
Sbjct: 8 GKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 368 bits (944), Expect = 8.270e-112 Identity = 181/259 (69.88%), Postives = 205/259 (79.15%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNF 2285
FAE + GV G++ P+PVS+K FD E PFRELVGSLM ATQTRPDI+NAVRAVARYC SP +HW AA+GILGYV RTS ITF RG + G++ Q+F DADYASK D RSVSGGLVMCGGGCV+WFSRTQKCVTLSTTE EYVA A+V KEVLFLRQVWRFM P+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVR HF+RELV R E+SITHV S+FQHADFLTK++ E+F HR+F
Sbjct: 154 FAEELAAEYGV----EWGKSVPLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 365 bits (937), Expect = 1.180e-111 Identity = 180/263 (68.44%), Postives = 209/263 (79.47%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMSL 2297
F + + GV VG + PM +K FD +EEA FPFRELVGSLM ATQTRPDI+NAVRAVARYC SP +HW AA+GILGY +RTS I+F+RG++ G + Q +ADAD+ASKA DRRSVSGG+V CGGG VSWFSRTQKCVTLSTTE YVAL +V KE+LFLRQVWRFM P+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVR HFLRELV R E+S+ HVPS +Q ADFLTK LP + FE HR+FVM+L
Sbjct: 92 FTDELAAEYGV----AVGTSVPMSSGVKLSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESHRDFVMNL 350
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 362 bits (928), Expect = 3.390e-111 Identity = 176/245 (71.84%), Postives = 201/245 (82.04%), Query Frame = 3
Query: 1560 GRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVARGELSITHVPSQFQHADFLTKSLPVETFEFHRNFVMS 2294
G+ PV +K FD +EE V++PFREL+GSLM ATQTRP+I+NA RAVARYC SP IHW A +GILGYV RTS ITF RGS+ GL+ ++FADADYASKA DRRSVSGG VMCG GC+SWFSRTQ+CVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSNSKH DVR HF+ ELV R E+SI +V S +QHADFLTK+L FEFHRNFVMS
Sbjct: 47 GKEILFPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMS 291
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 362 bits (930), Expect = 5.310e-111 Identity = 179/249 (71.89%), Postives = 204/249 (81.93%), Query Frame = 3
Query: 1509 FAENVRGRVGV*IRRRVGRNTPMPVSMKREAFDVEEEAVTFPFRELVGSLMGFATQTRPDISNAVRAVARYCVSP*SIHWSAAIGILGYVERTSSPEITFRRGSLVGLNFQMFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVALAEVTKEVLFLRQVWRFMSPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRQHFLRELVA-RGELSITHVPSQFQHADFLTKSL 2252
+AE + GV G+ P+PV MK FD +EE V++PFREL+GSLM ATQTRPDI+NAVRAVARYC SP IHW A +GILGYV RTS ITFRRGS+ GL+ ++FADADYASKA DRRSVSGGLVMCGGGC+SWFSRTQKCVTLSTTE EYV+LA+V KEVLFLRQVWRFM PE GMPCIPVFEDN+GAIQLA+NPI+NSN KHIDVR HF+RELV R E+SI HV S +QHADFLT++L
Sbjct: 78 YAEELGMEFGV----EYGKEIPLPVGMKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRAL 322 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.11.1 >prot_P-littoralis_Contig122.11.1 ID=prot_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp MFADADYASKATDRRSVSGGLVMCGGGCVSWFSRTQKCVTLSTTEVEYVAback to top mRNA from alignment at P-littoralis_Contig122:47308..51488+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.11.1 ID=mRNA_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4181bp|location=Sequence derived from alignment at P-littoralis_Contig122:47308..51488+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:47308..51488+ >mRNA_P-littoralis_Contig122.11.1 ID=mRNA_P-littoralis_Contig122.11.1|Name=mRNA_P-littoralis_Contig122.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig122:47308..51488+ (Pylaiella littoralis U1_48)back to top |