mRNA_P-littoralis_Contig1218.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1218.7.1
Unique NamemRNA_P-littoralis_Contig1218.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1218.7.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.150e-40
Identity = 95/225 (42.22%), Postives = 96/225 (42.67%), Query Frame = 1 
Query:    1 MISGSPAKKIKSSSSSSKRKFKAGNPLWPCPSIVCVPGLLKA-----------------------------------------------------------------------------------------------------------------------------EGAYVVKDWIDPPLHLHCAKRLWRAKVDEILASKQNLKDIGTTAQKESAQPSAPAIDL 300
            M SGSPAKKIKSSSS+SKRKF AGNPLWPCPSIVCVPGLLKA                                                                                                                             EG YVVKDWIDPPLHLHCAKRLWRAKVDEIL SKQNLKDIGTTAQKESAQPSAPAIDL
Sbjct:    1 MFSGSPAKKIKSSSSTSKRKFIAGNPLWPCPSIVCVPGLLKAVPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDVEDITHGCTGEIEEGDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSAPAIDL 225
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BLAST of mRNA_P-littoralis_Contig1218.7.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.170e-28
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:  127 EGAYVVKDWIDPPLHLHCAKRLWRAKVDEILASKQNLKDIGTTAQKESAQPSAPAID 297
            EGAYVVK W DPPL LHCAKRLWRAKVDEILA KQNLKDIGTTA+KESAQPSAPAID
Sbjct:   75 EGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSAPAID 131
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BLAST of mRNA_P-littoralis_Contig1218.7.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.560e-26
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  127 EGAYVVKDWIDPPLHLHCAKRLWRAKVDEILASKQNLKDIGTTAQKESAQPSAPAID 297
            EG YVVKDW DPPLHLHCAKRLWRAKVDEIL  K+ LKDIGTTA+KES+QPSAPAID
Sbjct:  168 EGEYVVKDWTDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAID 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1218.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE2.150e-4042.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X3_9PHAE1.170e-2891.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE9.560e-2685.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1218contigP-littoralis_Contig1218:40401..41416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.5730414-CDS-P-littoralis_Contig1218:40400..405261680789524.5730414-CDS-P-littoralis_Contig1218:40400..40526Pylaiella littoralis U1_48CDSP-littoralis_Contig1218 40401..40526 +
1680789524.582378-CDS-P-littoralis_Contig1218:41239..414161680789524.582378-CDS-P-littoralis_Contig1218:41239..41416Pylaiella littoralis U1_48CDSP-littoralis_Contig1218 41240..41416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1218.7.1prot_P-littoralis_Contig1218.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1218 40401..41416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1218.7.1

>prot_P-littoralis_Contig1218.7.1 ID=prot_P-littoralis_Contig1218.7.1|Name=mRNA_P-littoralis_Contig1218.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MISGSPAKKIKSSSSSSKRKFKAGNPLWPCPSIVCVPGLLKAEGAYVVKD
WIDPPLHLHCAKRLWRAKVDEILASKQNLKDIGTTAQKESAQPSAPAIDL
*
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mRNA from alignment at P-littoralis_Contig1218:40401..41416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1218.7.1 ID=mRNA_P-littoralis_Contig1218.7.1|Name=mRNA_P-littoralis_Contig1218.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-littoralis_Contig1218:40401..41416+ (Pylaiella littoralis U1_48)
ATGATCTCTGGGTCTCCTGCCAAAAAGATCAAATCTTCCTCCTCATCCTC
GAAGCGTAAGTTTAAAGCCGGCAATCCTCTTTGGCCTTGCCCAAGCATCG
TCTGCGTTCCCGGACTCCTCAAGGCGGTCCCCAAAACCAACGGCGGCCTT
TTTTCGCCGTGCGATCAGAAGGACTCCCAGGACCCCACCACCTGCCAGGT
TTCCTGCTCTATTCTCAGCGCGCGCGGGTCTGACCCTCCTATCTGCCAGC
TCTGCTTGACTTCCGTTGGAGGAACTCCGTCTCTCGGTGTGCTTTCGGGG
GAGAAGAACTCTCAGGGCCGCGACGGTAAGCAACTCTCAACTTCTGCGTC
ATTGCGCGACGCGCACGGATCCCGCCCGCTTTAACTGTACTCGGTGCAAT
TCATTTTTATGTATCCACCTTTCTGCCCTTCTCGGTGCCATCACATGCCT
CTATTCATGTAAATTCCGGTCTATCCTTTTTGTTTGATCGAAATTTTGTC
TCTCTACGCGTTCCTTCAACGCAGAGTGGCTGAATATTCACGCCTGTTGG
CCGATCTGCTGCGGGGCGAAGACCTCCGACGGAGAAAAATACAAGAACGC
CACGCTCACCACCGGCGACATCGTTGGGGTATGTATGTCCTGCTGTACTT
CATGTCCGTGATTTTAATGAGCTCGCGATTTAAAAGACCGTCGGCAAGTT
CAACACAAACCTCAAAATTTTAATCTGTTTCTTGCCCCCTTCCTCGTGTC
TATCGTGCCGGTGACAGCGCGCCTGCAATTGCTCAAACCCGGAAACCAAC
GTTGAGGACATCACCGACGGCTGCACCGGCGATATCGAGGAGGGCGCCTA
CGTCGTGAAGGACTGGATCGACCCGCCGCTTCACCTTCACTGCGCCAAGC
GCCTGTGGCGCGCCAAGGTCGACGAGATCCTGGCTTCCAAGCAGAACCTC
AAGGACATCGGCACGACCGCCCAGAAGGAAAGCGCGCAGCCTTCGGCGCC
GGCCATTGACCTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1218:40401..41416+

>mRNA_P-littoralis_Contig1218.7.1 ID=mRNA_P-littoralis_Contig1218.7.1|Name=mRNA_P-littoralis_Contig1218.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig1218:40401..41416+ (Pylaiella littoralis U1_48)
ATGATCTCTGGGTCTCCTGCCAAAAAGATCAAATCTTCCTCCTCATCCTC
GAAGCGTAAGTTTAAAGCCGGCAATCCTCTTTGGCCTTGCCCAAGCATCG
TCTGCGTTCCCGGACTCCTCAAGGCGGAGGGCGCCTACGTCGTGAAGGAC
TGGATCGACCCGCCGCTTCACCTTCACTGCGCCAAGCGCCTGTGGCGCGC
CAAGGTCGACGAGATCCTGGCTTCCAAGCAGAACCTCAAGGACATCGGCA
CGACCGCCCAGAAGGAAAGCGCGCAGCCTTCGGCGCCGGCCATTGACCTC
TAA
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