mRNA_P-littoralis_Contig1218.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1218.4.1
Unique NamemRNA_P-littoralis_Contig1218.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 574 bits (1479), Expect = 3.310e-179
Identity = 285/443 (64.33%), Postives = 337/443 (76.07%), Query Frame = 3
Query: 1122 YWVDENDIVHFVDVRGRNLIAIPQCMVADILALVHGLQGHAGVGATLTVVRDRFHWPKVV*DTRQYVSSCGCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLRPLALRHSLSDEFAQFAWDRDSKTTSTALDPTTVVTLVDCRKVRSTTG-RERWEYRGRT 2447
            Y +  +D++ + D +GR L AIP  MVADI+ALVH L GHAGVGATL+++RD FHWP +  DTR YV SC C RRKR  SRRV MMPGR  EPWDEL +DIL IDT S + N  VLLV+D+A+KFPFGFPL +KQAVGVAR +VELCLT+GVP+ +RCD G EF AEVV HLCRWL+  I FG  DHPRGQG VERLGGWL E+LAELC  WP RWDEYVS A+W+KRT PD SL +NMTPFELLFGR PRTSLDSLVP+T++ +   GLDNFVE+RKQNLREVRLALEKR EL VA+RA++N +I R SAGV      LVLVRE  S RHRD  GRKLQH+ YTGPW+V  +   G+SV V M GRK R+R VSTAD+K FHLR L LRHSL++EFAQ AW  D K    A +   +VT+ DCR+V+  +G R  WEY+G++
Sbjct: 1328 YSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFHWPTMTNDTRHYVLSCACRRRKRPPSRRVAMMPGRPLEPWDELQMDILKIDTPSQTGNNYVLLVVDRASKFPFGFPLKTKQAVGVARVVVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRASIVFGAADHPRGQGAVERLGGWLQELLAELCRFWPDRWDEYVSPAMWIKRTLPDTSLPSNMTPFELLFGRKPRTSLDSLVPLTDEMDQERGLDNFVERRKQNLREVRLALEKRQELRVAARAKANASIDRSSAGVGVMKESLVLVREFESCRHRDHRGRKLQHDLYTGPWKVTGIIQPGLSVEVMMHGRKKRSRRVSTADVKPFHLRELPLRHSLAEEFAQHAWGPDFKLPPGAKESLGLVTIADCRRVQPASGMRTVWEYKGKS 1770          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5JV25_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV25_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 4.300e-139
Identity = 209/306 (68.30%), Postives = 240/306 (78.43%), Query Frame = 3
Query: 1305 DTRQYVSSCGCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGR 2222
            DTR  V SC C  RKR  SRRV MM GR  EPWDEL +DIL IDT S + N  VLLV+D+A+KFPFGFPL +KQAVGVAR  VELCLT+GVP+ +RCD G EF AEVV HLCRWL+ +I FG TDHPRGQG VERLGGWL E+LAELC +WP RWDEYVS A+W+KRT PD SL +NMTPFELLFGR PRTSLDSLVP+T++ +   GLDNFVE+RKQNLREVRLALEKR EL VA+RA++N +I R SAGV      LVLVRE+ S+RHRD  GRKLQH+ YTGPW+V  +   G+SV V M GR
Sbjct:    4 DTRHCVLSCACRTRKRPPSRRVAMMSGRPLEPWDELQMDILKIDTPSQTGNNYVLLVVDRASKFPFGFPLKTKQAVGVARVAVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRANIVFGATDHPRGQGAVERLGGWLQELLAELCRSWPDRWDEYVSPAMWIKRTLPDTSLPSNMTPFELLFGRKPRTSLDSLVPLTDEMDQERGLDNFVERRKQNLREVRLALEKRQELRVAARAKANASIERSSAGVGVMKDSLVLVRESESSRHRDHRGRKLQHDLYTGPWKVTGIIQPGLSVEVMMHGR 309          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 2.110e-131
Identity = 211/347 (60.81%), Postives = 261/347 (75.22%), Query Frame = 3
Query: 1404 DELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLRPLALRHSLSDEFAQFAWDRDSKTTSTALDPTTVVTLVDCRKVRSTTGRERWEYRGR 2444
            DEL +DI+ ID  S + N  +LLV+D+A+K PFGFPL +KQAVGVAR LVE CLTFGVP  IRCD G EF AEVVTHLCRWL+ DI FG  DHPRGQG+VERLGGWL E+ A+LC +WP RWD YVS ++W+KRT PD +L ++M PF+ LF R PRT+LDSLVP+T++    GGLDNFV++RKQNLREVR+ALE+RHEL VA+RA++N TI R SAGV      LVLVRE  S R+RDR GR+LQH+ YTGP +V +V   G+ V V++ GR+ R R VSTAD+K FHL P +LR S+SDEFA +AW  D K  S A +    V++ DCR+ RS T +  WEYRG+
Sbjct:  418 DELQMDIVKIDLPSLTGNNYILLVVDRASKLPFGFPLETKQAVGVARVLVEQCLTFGVPNTIRCDGGSEFGAEVVTHLCRWLRTDIVFGAADHPRGQGSVERLGGWLQELPAKLCRSWPDRWDGYVSPSIWIKRTLPDTALPSHMIPFKRLFDRKPRTTLDSLVPLTDETGTEGGLDNFVKRRKQNLREVRIALERRHELRVAARAKANATIERSSAGVAVGRNSLVLVRETESRRYRDRRGRELQHDLYTGPSKVTDVIRPGLIVEVSLHGRRKRTRRVSTADVKPFHLSPPSLRLSISDEFAAYAWGADVKLPSGAAELLEFVSIADCRRSRSRT-QVVWEYRGK 763          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.670e-128
Identity = 208/332 (62.65%), Postives = 252/332 (75.90%), Query Frame = 3
Query: 1341 RRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLRPLALRHSLSDEFAQFAWDRD 2336
            RRKR  S+RV MMPGR  EPW+EL +DIL ID  S + N  +LLV+D+A+KFPFGFPL +KQAVG AR LVELC TFGVPR I CD G  F AEVV H CRWL+ DI F   DHPRGQG VERL  WL E+LAELC +WP RWD+Y+  ++W+K T PD  L ++MTPFELLFGR P T+LDSLVP+T++  A GGLDNFVE+RKQNLREVR+ LE+ HEL VA+RA++N T  + SAGV      LVL+RE  S RHRDR  RKLQH+ YTGPW+V +V   G+SV V++ GR+ R+R VSTAD+K FHLRP +LRHS++DEFA +AW  D
Sbjct: 1070 RRKRPQSKRVAMMPGRPLEPWNELQMDILKIDKPSLTGNNYILLVVDRASKFPFGFPLETKQAVGAARVLVELCPTFGVPRTIHCDGGSGFGAEVVKHPCRWLRADIVFSGADHPRGQGAVERLREWLQELLAELCRSWPDRWDDYLYPSIWIKLTLPDTVLPSHMTPFELLFGRKPGTTLDSLVPLTDETGAEGGLDNFVERRKQNLREVRMVLERWHELRVAARAKANATFEKSSAGVAVGRNSLVLIRETESRRHRDRRERKLQHDLYTGPWKVTDVIQPGLSVEVSLHGRRKRSRRVSTADVKPFHLRPPSLRHSIADEFATYAWGPD 1401          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 7.280e-111
Identity = 201/446 (45.07%), Postives = 275/446 (61.66%), Query Frame = 3
Query: 1119 EYWVDENDIVHFVDVRGR-NLIAIPQCMVADILALVHGLQGHAGVGATLTVVRDRFHWPKVV*DTRQYVSSCGCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLRPLALRHSLSDEFAQFAWDRDSKTTSTALDPTTVVTLVDCRKVRSTTGRER---WEYRGR 2444
            +Y +D+  ++ F   RG+ + IA+P+ ++  +LAL HG   H G   T  ++  ++HWP +  D R+YV SC C  +KR  SR++ M+P R   PW  L +DIL   T +   N+ +L+V+D+ATKF FGFPL +K+ VGV+RKL+EL L FG+P  IRCD G E  +E++ HLCRWLKV + FGP +HPRGQGTVER+G  L ++L+ELC AWP+RWDEYV+ A W  R  PD SL  N++P+++LFGR PRT LD L P  +   +  GL++ VE+ ++   EV  AL KR       R   N  I R S G  + VGD VLVRE+ ST HRD    KL H+ +TGPW V  V   G+S  V + GR+ R R+V  +D+KQF+ RPL LR    DEF+ F W  D      ++    + TLVD R  +   G      WEYRG+
Sbjct: 1127 DYILDDQSLL-FHAPRGKLHAIALPRRLIPGVLALAHGTFAHPGRARTTIIIAGKYHWPSLKKDVRRYVESCRCRMKKRQWSRQLRMLPARFLLPWQVLELDILDTKTVTALGNRYLLVVVDRATKFLFGFPLPTKETVGVSRKLLELILIFGLPLSIRCDPGRENTSEIMEHLCRWLKVSLDFGPANHPRGQGTVERMGAVLAQLLSELCQAWPQRWDEYVAIATWAHRMQPDESLPGNVSPYQMLFGRAPRTPLDQLSPSLDNSGSALGLESSVEETRRKHIEVTDALRKRQAEKNRHRDLQNARISRASPGAKSRVGDKVLVRESASTLHRDGVHPKLAHDHFTGPWVVVNVVRMGLSFTVRLHGRQVRQRTVVASDMKQFYSRPLDLRLPFEDEFSHFVWGPDLGLVEDSVVAAPLYTLVDRRTTQGAGGASTAWAWEYRGK 1571          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.850e-103
Identity = 190/450 (42.22%), Postives = 274/450 (60.89%), Query Frame = 3
Query: 1104 QGDHGEYWVDENDIVHFVDVRGR-NLIAIPQCMVADILALVHGLQGHAGVGATLTVVRDRFHWPKVV*DTRQYVSSCGCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLRPLALRHSLSDEFAQFAWDRDSKTTSTALDPTTVVTLVDCRKVRSTTGRERW--EYRGR 2444
            +G+ G+Y +D+  ++ F   RG+ + IA+P+ ++  +LAL HG   H G   T  ++ D++HWP +    R+YV+SC C   KR +S ++ M+P R   PWD L +DIL + T ++S ++ +L+ +D+ATKF FGFPL +K+ VGV+RKL+ L L FG+P  IRCD G +  +E++ H CRWLKV + FGP +HPRGQGTVER+G  L ++L+ELC AWP+RW+EYV+ A W  R   D SL  N +P ++LFGR PRT LD L P  +   A  GL+  VE+ +    +V  AL KR       R   N    R S G  A+ GD VLVRE+ ST HRD +  KL H+ +TGPW V  V   G+S  V +  R  R R+V+ +D+K F+ RPL +R +  DEFA + W+ D      ++    + TL D R  ++      W  EY+G+
Sbjct: 1668 KGEVGDYVLDDQKLL-FHAPRGKLHAIALPRRLIPGVLALAHGTFAHPGSARTTIIIADKYHWPSLKKGVRRYVTSCRCRMSKRPSSAQLRMLPARFLRPWDVLELDILDMKTVANSGSRYLLVGVDRATKFLFGFPLKTKERVGVSRKLLGLLLIFGLPTSIRCDPGRDNTSEIMEHPCRWLKVSLDFGPANHPRGQGTVERMGAVLAQLLSELCQAWPRRWEEYVTVATWTHRMQQDESLPGNASPCQMLFGRSPRTPLDQLAPSLDNSGAALGLEPSVEETRHKHIQVTEALRKRQAEKNRQRNLQNARFSRTSPGAKAKEGDKVLVRESASTLHRDGTHPKLAHDHFTGPWVVITVVCAGLSFTVRLNERHVRQRTVAASDMKPFYSRPLDVRLAFEDEFAHYVWEPDLGLVEDSVVAAPLYTLFDRRTTQAGGAPTAWAWEYKGK 2116          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 1.010e-95
Identity = 175/316 (55.38%), Postives = 214/316 (67.72%), Query Frame = 3
Query: 1332 GCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLD-SLVPVTEQPNAPGGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHLR 2276
            GC RRKR  SRRV M+ GR  EPWDEL +DIL IDT S + N  +LLV+D+A+KFP GFPL +KQAVGVAR +VELCLT+GVP+ +RCD G EF AEVV HLCRWL+ +I FG  DHPRGQG+VERLGGWL E+LA+LC +W  RWD +VS A+W+KRT PD SL +NMTPFE L G    +    S + V     +  G++                     EL VA+RA++N +I R SAGV      LVLV E+ S+RHRD  GR+LQH+ YTGPW+V  V   G+SV V M GRK R+R VSTAD+  FHLR
Sbjct: 1401 GCDRRKRPLSRRVAMVAGRPLEPWDELQMDILKIDTPSQTGNNYILLVVDRASKFPIGFPLETKQAVGVARVVVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRANIVFGAADHPRGQGSVERLGGWLQEMLAKLCRSWSDRWDVFVSPAMWIKRTLPDTSLPSNMTPFEFLNGDSTASWRGASKISVKYDSPSRNGMN---------------------ELRVAARAKANASIERSSAGVGDVKDSLVLVGESESSRHRDHRGRELQHDLYTGPWKVTGVVQPGLSVEVMMHGRKKRSRRVSTADVNPFHLR 1695          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 3.450e-82
Identity = 135/201 (67.16%), Postives = 160/201 (79.60%), Query Frame = 3
Query: 1383 GRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREVRLAL 1985
            GR  EPWDEL +DIL IDT S + N  +LLV+D+A+KFPFGFPL + QAVGVAR +VELCLT+GVP+ +RCD G EF A +V HLCRWL+ +I FG  DHPRGQG+VERLGGWL E+LAELC  WP RWDEYVS A+W+KRT PD SL   MTPFE LFGR PRTSLDSLVP+T++ +   G+DNFVE+RK NLREV L +
Sbjct:  632 GRPLEPWDELHMDILKIDTPSQTSNNHILLVVDRASKFPFGFPLETNQAVGVARVVVELCLTYGVPKTVRCDEGPEFGARLVKHLCRWLRANIVFGAADHPRGQGSVERLGGWLQELLAELCRPWPDRWDEYVSPAMWIKRTLPDTSLPTYMTPFEFLFGRKPRTSLDSLVPLTDEMDQERGVDNFVERRKHNLREVGLVM 832          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.760e-72
Identity = 125/192 (65.10%), Postives = 147/192 (76.56%), Query Frame = 3
Query: 1122 YWVDENDIVHFVDVRGRNLIAIPQCMVADILALVHGLQGHAGVGATLTVVRDRFHWPKVV*DTRQYVSSCGCTRRKRSTSRRVPMMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSKQAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGPTDHPRGQG 1697
            Y +  +D++ + D +GR L AIP  MVADI+ALVH L GHAGVGATL+++RD FHWP +  DTR YV SC C RRKR  SRRV MMPGR  EPWDEL +DIL IDT S + N  V LV+D+A+KFPFGFPL +KQAVGVAR +VELCLT+GVP+ +RCD G EF AEVV HLCRWL+  I FG  DHPRGQG
Sbjct:  806 YSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFHWPTMTNDTRHYVLSCACRRRKRPPSRRVAMMPGRPLEPWDELQMDILKIDTPSQTGNNYVFLVVDRASKFPFGFPLKTKQAVGVARVVVELCLTYGVPKTVRCDGGPEFGAEVVKHLCRWLRASIVFGAADHPRGQG 997          
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 3.950e-70
Identity = 129/190 (67.89%), Postives = 153/190 (80.53%), Query Frame = 3
Query: 1656 DIAFGPTDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDASLHANMTPFELLFGRPPRTSLDSLVPVTEQPNAP--GGLDNFVEQRKQNLREVRLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDRSGRKLQHEFYTGPWRVKEVPLTGISVGVTMQG 2219
            DIAFG  DH +GQG+VERLGGW+ E+LAELC  W  RWDEYVS A+W+KRT PD S+H +MTPFELLFGR PRTSLDSLVP++++ N    GGLDNFVE+R QNLREVRL LEKRH+L VA+RA+SN  I R +A VT E G+LV+VREA S+RHRD+ GRKLQH+ YTGPW V+EV   G+SV V MQG
Sbjct:  891 DIAFGVADHAQGQGSVERLGGWMQELLAELCKCWNDRWDEYVSPAIWIKRTLPDISVHPHMTPFELLFGRKPRTSLDSLVPLSDEGNEDPSGGLDNFVERRNQNLREVRLVLEKRHDLRVAARAKSNANISRSTASVTVEKGNLVMVREADSSRHRDKRGRKLQHDLYTGPWTVEEVLQRGLSVQVKMQG 1080          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1218.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE3.310e-17964.33RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JV25_9PHAE4.300e-13968.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMP6_9PHAE2.110e-13160.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7F8_9PHAE1.670e-12862.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNP4_9PHAE7.280e-11145.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE1.850e-10342.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE1.010e-9555.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9B2_9PHAE3.450e-8267.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFK7_9PHAE1.760e-7265.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBF4_9PHAE3.950e-7067.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1218contigP-littoralis_Contig1218:34509..37140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15712703
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Model size2632
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.14e-24
EggNOG OGsCOG2801@1|root,KOG1721@1|root,KOG0017@2759|Eukaryota,KOG1721@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
Cds size1107
COG categoryOU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.5121503-UTR-P-littoralis_Contig1218:34508..346601680789524.5121503-UTR-P-littoralis_Contig1218:34508..34660Pylaiella littoralis U1_48UTRP-littoralis_Contig1218 34509..34660 -
1680789524.5381227-UTR-P-littoralis_Contig1218:35767..371401680789524.5381227-UTR-P-littoralis_Contig1218:35767..37140Pylaiella littoralis U1_48UTRP-littoralis_Contig1218 35768..37140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.5249798-CDS-P-littoralis_Contig1218:34660..357671680789524.5249798-CDS-P-littoralis_Contig1218:34660..35767Pylaiella littoralis U1_48CDSP-littoralis_Contig1218 34661..35767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1218.4.1prot_P-littoralis_Contig1218.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1218 34661..35767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1218.4.1

>prot_P-littoralis_Contig1218.4.1 ID=prot_P-littoralis_Contig1218.4.1|Name=mRNA_P-littoralis_Contig1218.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=369bp
MMPGRRAEPWDELIIDILAIDTESDSHNKCVLLVIDKATKFPFGFPLLSK
QAVGVARKLVELCLTFGVPRMIRCDSGGEFRAEVVTHLCRWLKVDIAFGP
TDHPRGQGTVERLGGWLTEVLAELCSAWPKRWDEYVSQALWVKRTSPDAS
LHANMTPFELLFGRPPRTSLDSLVPVTEQPNAPGGLDNFVEQRKQNLREV
RLALEKRHELSVASRARSNETIRRPSAGVTAEVGDLVLVREAPSTRHRDR
SGRKLQHEFYTGPWRVKEVPLTGISVGVTMQGRKNRARSVSTADIKQFHL
RPLALRHSLSDEFAQFAWDRDSKTTSTALDPTTVVTLVDCRKVRSTTGRE
RWEYRGRTLGTSINPRLH*
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mRNA from alignment at P-littoralis_Contig1218:34509..37140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1218.4.1 ID=mRNA_P-littoralis_Contig1218.4.1|Name=mRNA_P-littoralis_Contig1218.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2632bp|location=Sequence derived from alignment at P-littoralis_Contig1218:34509..37140- (Pylaiella littoralis U1_48)
TTCTACTGTTCATTATCTAAGTCACCTTGGTAAATACAGCGACTTACACT ACATTTTTTTTTCTGGCGGGTCATGCATACTGCATGTTCCGACGTTGTTC ATCAAATTTATTGACGCTGTGCTCACATTCTGGTGTCCTCACGACGCGGC ACAGCACGAGCGCATGAAGTGCTTGGTATTTGTCCACTATCTTGTGTGTT GCTGCTGCTGTTGAGCCTCGGTTTTGTTGCTGCTGCCCCTTCTATTGCTG TCTGCTACTACCTGTTTGCTGCCGGTGTTTGCGCGTTGTCCGTTGCCCGT TGTCGTGGGAGACACCTGCTTGGAGGGAACATGGTGACCTACTGTTTCGC ACGTTTGCCTGCTACTGTTACTGTTCCCTGCTGCCCGCACGCGCCTGTTT TTGCTGTCGTTTGCTCTGTTTTGCTGCAGTCCGCGGCTGTCGATGTTCGT TCTCGTTCGCTTCCCCATTACTTTCTAACATCAATCTGCTCCATTTTACT TCACGGCATAGATCTATCTGTAATGCTCTTCCAGCAGGGGGGGCAGGGCG AAGGGTGTCTATCCTGCCAGCAAGTACGCAACATGCTGCGGTCTCGACCA CATTGTGCACGGTGCACAGAGCCAAAGCCTAAATGCTGGGTAAACTATCA GCACACGAAATTGTTCCGAGTTTGCGCAGTCATGCACAGGTCGCATAGGT TGGACATGATATTTTGCTTACCTCGCGTAGTTTGATACGTCAGAGTCAGA GAGATCACTCAGTCGCGCTCTAGTCTACGCAAGGGGGGAAGGTGTCATGT AGGTCGATTTACAATGCCTTGCCGCCCTGTTGGGATCGATCCAACTAGAG AGTTGTCGTCTTTTTAACGGTCACGATATATATGCACACTCGGTCGCGGC GGTGACGTCAGCGAGGTCCTTTCAGCTCGGGGGGAGGTTCCAGGATCACG CTCAGCCGAGCAGCTAGCAAGCCCCTCCGTCCCGGTGGACCGCGCGGTCA CAATCCTGACCAACCCTGCCAGGCTGGCTGTGCAGCAACGAGACGACGCC TTTCTGGTGCAGGTTCGAAATCAGTTGAGGGAGAAAACAAGCTAGTAGGA GTGCAGGGTGATCATGGGGAGTACTGGGTGGACGAAAACGATATAGTTCA TTTTGTCGATGTGCGCGGTAGGAACTTGATCGCTATTCCACAGTGTATGG TAGCGGACATTTTAGCACTTGTACACGGGTTGCAAGGGCACGCAGGAGTA GGGGCCACTTTGACTGTAGTTCGCGACCGCTTCCACTGGCCTAAAGTAGT CTAAGACACCAGACAGTATGTGTCATCTTGCGGATGCACAAGGAGGAAAC GATCGACGAGTAGGCGGGTGCCGATGATGCCAGGTCGACGTGCGGAGCCG TGGGACGAACTCATAATCGATATACTAGCCATAGACACAGAATCCGACTC CCATAACAAGTGTGTGCTACTCGTAATCGATAAAGCTACGAAATTCCCCT TCGGCTTTCCTCTTCTATCCAAACAAGCAGTCGGTGTTGCTCGTAAGCTA GTAGAGCTGTGTCTGACGTTTGGAGTACCCCGCATGATCCGATGCGACAG CGGTGGAGAATTTAGAGCCGAAGTGGTAACCCACCTCTGTAGATGGCTCA AAGTAGACATAGCATTCGGACCGACAGACCATCCCAGAGGCCAAGGAACT GTAGAGAGGTTGGGCGGATGGCTCACCGAAGTGTTGGCTGAACTGTGCAG TGCCTGGCCCAAGCGATGGGATGAGTACGTTTCTCAAGCGTTATGGGTCA AACGCACCTCACCTGACGCGTCTCTACATGCCAACATGACACCCTTCGAG CTGCTTTTCGGACGCCCCCCGCGCACGTCTCTAGACTCTTTGGTACCTGT CACAGAACAGCCAAACGCACCCGGAGGGCTAGACAACTTTGTAGAACAAC GTAAACAGAACCTGCGGGAGGTCCGTCTTGCACTCGAGAAGCGGCACGAA CTGAGCGTAGCCTCGAGGGCTCGGTCGAACGAGACCATCCGTCGTCCTTC GGCAGGCGTCACAGCCGAAGTGGGTGACCTAGTATTGGTTCGCGAGGCAC CTAGCACTCGCCACCGCGACCGCAGCGGCAGGAAACTGCAGCACGAGTTC TACACGGGCCCGTGGAGAGTGAAGGAAGTACCACTTACGGGCATAAGCGT GGGCGTAACGATGCAGGGTAGAAAGAACAGAGCAAGATCAGTTTCCACAG CAGACATCAAACAGTTTCACCTGCGACCACTTGCACTTAGACACTCTTTA TCAGACGAATTCGCACAGTTTGCCTGGGACAGGGATTCTAAGACAACATC CACCGCGCTCGATCCCACTACAGTAGTCACCTTGGTAGACTGTCGCAAGG TTCGCTCGACCACCGGCCGAGAACGTTGGGAATACAGAGGTCGAACACTT GGCACCTCTATCAACCCCCGTCTGCACTGACCACCGCCGCCGTTCCCGCT GTCCCCTCGCGACGAACTGCTGCGTTGCCCCGCAAACAAGCTCTGGACCT ATATTCTATAGGTACTCGGATTCGGAAGGATATTGGCTCAGGGTTGATTC AAGAGGGTCAATTATTTGACTGCAAAGACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1218:34509..37140-

>mRNA_P-littoralis_Contig1218.4.1 ID=mRNA_P-littoralis_Contig1218.4.1|Name=mRNA_P-littoralis_Contig1218.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1107bp|location=Sequence derived from alignment at P-littoralis_Contig1218:34509..37140- (Pylaiella littoralis U1_48)
ATGATGCCAGGTCGACGTGCGGAGCCGTGGGACGAACTCATAATCGATAT
ACTAGCCATAGACACAGAATCCGACTCCCATAACAAGTGTGTGCTACTCG
TAATCGATAAAGCTACGAAATTCCCCTTCGGCTTTCCTCTTCTATCCAAA
CAAGCAGTCGGTGTTGCTCGTAAGCTAGTAGAGCTGTGTCTGACGTTTGG
AGTACCCCGCATGATCCGATGCGACAGCGGTGGAGAATTTAGAGCCGAAG
TGGTAACCCACCTCTGTAGATGGCTCAAAGTAGACATAGCATTCGGACCG
ACAGACCATCCCAGAGGCCAAGGAACTGTAGAGAGGTTGGGCGGATGGCT
CACCGAAGTGTTGGCTGAACTGTGCAGTGCCTGGCCCAAGCGATGGGATG
AGTACGTTTCTCAAGCGTTATGGGTCAAACGCACCTCACCTGACGCGTCT
CTACATGCCAACATGACACCCTTCGAGCTGCTTTTCGGACGCCCCCCGCG
CACGTCTCTAGACTCTTTGGTACCTGTCACAGAACAGCCAAACGCACCCG
GAGGGCTAGACAACTTTGTAGAACAACGTAAACAGAACCTGCGGGAGGTC
CGTCTTGCACTCGAGAAGCGGCACGAACTGAGCGTAGCCTCGAGGGCTCG
GTCGAACGAGACCATCCGTCGTCCTTCGGCAGGCGTCACAGCCGAAGTGG
GTGACCTAGTATTGGTTCGCGAGGCACCTAGCACTCGCCACCGCGACCGC
AGCGGCAGGAAACTGCAGCACGAGTTCTACACGGGCCCGTGGAGAGTGAA
GGAAGTACCACTTACGGGCATAAGCGTGGGCGTAACGATGCAGGGTAGAA
AGAACAGAGCAAGATCAGTTTCCACAGCAGACATCAAACAGTTTCACCTG
CGACCACTTGCACTTAGACACTCTTTATCAGACGAATTCGCACAGTTTGC
CTGGGACAGGGATTCTAAGACAACATCCACCGCGCTCGATCCCACTACAG
TAGTCACCTTGGTAGACTGTCGCAAGGTTCGCTCGACCACCGGCCGAGAA
CGTTGGGAATACAGAGGTCGAACACTTGGCACCTCTATCAACCCCCGTCT
GCACTGA
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