mRNA_P-littoralis_Contig1218.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1218.2.1
Unique NamemRNA_P-littoralis_Contig1218.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A812P5W7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P5W7_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 5.480e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   70 YGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            Y QCGG  H+GSTCC  G+ C+ SNEFYSQCLP
Sbjct:  531 YAQCGGNNHEGSTCCEPGFVCKASNEFYSQCLP 563
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A1Y1XJ01_9FUNG (Metallo-dependent phosphatase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XJ01_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   61 VEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            VE++GQCGG  ++G TCCL GY C+E+N +YSQC+P
Sbjct:  796 VENWGQCGGINYNGLTCCLTGYYCKETNPYYSQCVP 831
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: C1MIU1_MICPC (Carbohydrate-binding module family 1 protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MIU1_MICPC)

HSP 1 Score: 55.5 bits (132), Expect = 1.810e-6
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   46 PCQDPVEDYGQCGGKEHDGSTCCL-DGYQCEESNEFYSQCLPE 171
            PC    E YGQCGG+EH G+TCC  DG  C E +E+YSQCLPE
Sbjct:  757 PC---AETYGQCGGREHAGATCCANDGDDCVEQDEWYSQCLPE 796
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A813CDZ0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CDZ0_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 3.390e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   46 PCQDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            PCQ   + Y QCGG  H+GSTCC  G+ C+  +EFYSQCLP
Sbjct:  145 PCQ---KGYAQCGGNNHEGSTCCEAGFVCKADSEFYSQCLP 182
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A812IR98_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812IR98_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 3.460e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   46 PCQDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            PCQ   + Y QCGG  H+GSTCC  G+ C+  +EFYSQCLP
Sbjct:  511 PCQ---KGYAQCGGNNHEGSTCCEAGFVCKADSEFYSQCLP 548
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A1Q9EKZ9_SYMMI (Carbohydrate-binding domain-containing protein C2E1P3.05c n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EKZ9_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 3.500e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   46 PCQDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            PCQ   + Y QCGG  H+GSTCC  G+ C+  +EFYSQCLP
Sbjct:  511 PCQ---KGYAQCGGNNHEGSTCCEAGFVCKADSEFYSQCLP 548
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A812ZJM4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZJM4_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 8.540e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   46 PCQDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            PCQ   + Y QCGG  H+GSTCC  G+ C  ++EFYSQCLP
Sbjct:  514 PCQ---KGYAQCGGNNHEGSTCCEAGFVCIANSEFYSQCLP 551
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A814JSB1_9BILA (Cellulase n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A814JSB1_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 9.140e-6
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   70 YGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLPEEDESSTSS 195
            YGQCGGKE  GST C  G  C   N++YSQCLP  D SS+SS
Sbjct:   25 YGQCGGKEWTGSTQCCSGSTCTFGNDYYSQCLPSSDSSSSSS 66
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.090e-5
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   34 EPDNPCQDP-VEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLP 168
            EP  P  D   E +GQCGG   +GSTCC++GY+C  +N++YSQC P
Sbjct:  443 EPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYECVANNDWYSQCRP 488
[Close]
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Match: A0A6G0WFZ4_9STRA (CBM1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFZ4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-5
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   52 QDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEFYSQCLPEEDESSTSS--TSEEVEPSPSSPTTV 240
            Q PV  YGQCGG  + GST C+ GY C+ S+++YSQC+P    ++ ++  T+++  PS ++PTT 
Sbjct:   20 QTPVAAYGQCGGSGYTGSTTCVQGYVCQVSSQWYSQCVPSGGTTAPTAKPTTKQPTPSTATPTTA 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1218.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812P5W7_9DINO5.480e-769.70Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A1Y1XJ01_9FUNG1.320e-661.11Metallo-dependent phosphatase n=1 Tax=Anaeromyces ... [more]
C1MIU1_MICPC1.810e-662.79Carbohydrate-binding module family 1 protein n=1 T... [more]
A0A813CDZ0_9DINO3.390e-658.54Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A812IR98_SYMMI3.460e-658.54Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A1Q9EKZ9_SYMMI3.500e-658.54Carbohydrate-binding domain-containing protein C2E... [more]
A0A812ZJM4_9DINO8.540e-658.54Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A814JSB1_9BILA9.140e-661.90Cellulase n=6 Tax=Adineta steineri TaxID=433720 Re... [more]
D8LMS9_ECTSI1.090e-552.17EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6G0WFZ4_9STRA1.460e-543.08CBM1 domain-containing protein n=1 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1218contigP-littoralis_Contig1218:15552..16349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMF4
PFAMsCBM_1,LPMO_10
Model size359
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5e-09
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.4078903-CDS-P-littoralis_Contig1218:15552..157501680789524.4078903-CDS-P-littoralis_Contig1218:15552..15750Pylaiella littoralis U1_48CDSP-littoralis_Contig1218 15553..15750 -
1680789524.4223-CDS-P-littoralis_Contig1218:16190..163491680789524.4223-CDS-P-littoralis_Contig1218:16190..16349Pylaiella littoralis U1_48CDSP-littoralis_Contig1218 16191..16349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1218.2.1prot_P-littoralis_Contig1218.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1218 15553..16349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1218.2.1

>prot_P-littoralis_Contig1218.2.1 ID=prot_P-littoralis_Contig1218.2.1|Name=mRNA_P-littoralis_Contig1218.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
EHGDHSGTSAEEPDNPCQDPVEDYGQCGGKEHDGSTCCLDGYQCEESNEF
YSQCLPEEDESSTSSTSEEVEPSPSSPTTVGDRDDDETLSLTSQPQQTQQ
LQQSTVQPQPTQQPQQPTQ
back to top

mRNA from alignment at P-littoralis_Contig1218:15552..16349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1218.2.1 ID=mRNA_P-littoralis_Contig1218.2.1|Name=mRNA_P-littoralis_Contig1218.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig1218:15552..16349- (Pylaiella littoralis U1_48)
GAACATGGAGATCACAGTGGAACATCTGCCGAAGAGCCGGACAACCCCTG
CCAGGACCCCGTGGAGGACTACGGCCAATGTGGAGGCAAAGAGCACGATG
GGTCTACTTGCTGTTTGGATGGCTACCAGTGCGAGGAGTCGAACGAGTTC
TACTCTCAGGTACATACGCGTACATATCTAGGCTACCCTGCGTACTTACA
AAAAAGCACATCCTGAACACGTACCACTTTTGCATACATCGATACAATAC
TTGTGCAGTAGACGACAACGCTACAACCATCTGATCATCGCCATGTGAGC
AGCTTGCCTTGCGACACATTTAAGAAATACAACAGCTTGCCGTTGACAAT
ATACTGGTATGTTTCGAAGTGCATGTGATCAAATGTCACCTTTGACACAT
CACCAGTGCACTCAGCCCACTACGCACCATCTTTCCGCGAAGGCTTCCAA
TAAATGACACCGAGCTCCCCGCCTTAGACTCCACATTCGCTTTGTTTGAT
AAATCTTCCATCCCTTCCTCCCACCTTACCTTTCTCATTTTTTCCGATGA
ACCCCCCATCCTTTCCTTCCTTCGTAACTTCGTTTTAATATCTCCTCAGT
GTCTTCCCGAGGAAGACGAATCTAGCACTTCTTCAACTTCCGAAGAGGTC
GAGCCTTCCCCTTCATCACCCACGACTGTCGGGGATAGAGACGACGACGA
AACCCTGTCGCTGACCTCACAGCCTCAGCAGACCCAACAGCTCCAGCAGT
CGACCGTACAACCTCAGCCGACCCAGCAGCCCCAGCAGCCGACCCAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1218:15552..16349-

>mRNA_P-littoralis_Contig1218.2.1 ID=mRNA_P-littoralis_Contig1218.2.1|Name=mRNA_P-littoralis_Contig1218.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1218:15552..16349- (Pylaiella littoralis U1_48)
GAACATGGAGATCACAGTGGAACATCTGCCGAAGAGCCGGACAACCCCTG
CCAGGACCCCGTGGAGGACTACGGCCAATGTGGAGGCAAAGAGCACGATG
GGTCTACTTGCTGTTTGGATGGCTACCAGTGCGAGGAGTCGAACGAGTTC
TACTCTCAGTGTCTTCCCGAGGAAGACGAATCTAGCACTTCTTCAACTTC
CGAAGAGGTCGAGCCTTCCCCTTCATCACCCACGACTGTCGGGGATAGAG
ACGACGACGAAACCCTGTCGCTGACCTCACAGCCTCAGCAGACCCAACAG
CTCCAGCAGTCGACCGTACAACCTCAGCCGACCCAGCAGCCCCAGCAGCC
GACCCAA
back to top