mRNA_P-littoralis_Contig121.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.97.1
Unique NamemRNA_P-littoralis_Contig121.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: D8LEH5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH5_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 7.200e-107
Identity = 184/252 (73.02%), Postives = 212/252 (84.13%), Query Frame = 1 
Query:  109 MDVQGVLRWLVDAKVPVVKAMPLVSALAAAGVRNADGIALLNEVDLAATVPDKSLLKKIRAKLSGKGMKRSGAAGELSVGANSSSTNKRAKKTSSTTGLDKIVAAAAERAPEPPTSSLSSAKLAEIEIKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRALGS 864
            MDVQG+LRWLVDAK+PV KAMPLVSALAAAGVR++DGIA L E  LA TV DK  L+KIRAK+ GKG KRS  AG  +   + S+T+KRA+   S +G DK +AAAAERAPEPP SSLS  +LA++EIKINRSPVMVLWA EVAQRLSFDWSE++T+GRAVADWLAL+KGEHLGLLEAD  AERAA EETDDLPTRTVE+MGQDFTLR+T+ GWRA+SKGK+VPAKRV  FL KA+G NL PAR +LRAL +
Sbjct:    1 MDVQGILRWLVDAKIPVGKAMPLVSALAAAGVRDSDGIASLGEDRLADTVTDKPSLRKIRAKIFGKGGKRS--AGGSASNESGSTTSKRARP--SVSGADKTLAAAAERAPEPPCSSLSDEQLAQVEIKINRSPVMVLWAAEVAQRLSFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKVVPAKRVHTFLCKAYGVNLGPARASLRALAA 248
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A7C5Z8P6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5Z8P6_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 1.230e-17
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRALG-SW 867
            IKINR+PV+ LWA  VA+RL FDW E++T+GRAVA   A  KG  LGL       ER  R +        ++++ +     QT EG RALSK + +    V  +L + FG+ L  AR A+  L  SW
Sbjct:    5 IKINRAPVLTLWAAVVAERLGFDWDEALTLGRAVAGLNAYSKGVSLGLYRPTPEGERERRRKRAKGEIVQIDLLHRAVPAVQTPEGLRALSKDQPISPPSVERYLREKFGNRLEDARRAMERLARSW 131
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A522PXA1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522PXA1_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 6.900e-16
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRALG-SW 867
            I+INR+PV+ LWA  VA+RL FD  E++T+GRAVA   A  KG  LGL +    AER  R +        V+++ +     QT EG RALSK + +    V  +L   FGD L  A+ A+  L  SW
Sbjct:    5 IRINRAPVLTLWAAVVAERLGFDRDEALTLGRAVAGLNAYSKGVSLGLYKPTPEAERERRHKRAKGEVLQVDLLHRAVPSVQTHEGLRALSKDQPISPSSVDRYLQGKFGDRLDDAKKAMERLARSW 131
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A3N5M0K4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5M0K4_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 1.860e-15
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRAL 858
            IK+NR+PVM LWA  VA+RL FD  E++T+G+ V    A  KG+ LG+ +        ARE   D     +E++G+      T+EG RA++K K V  + V  +L K F D+L   R A+  L
Sbjct:    6 IKVNRAPVMTLWAVVVAERLGFDHDEALTLGKVVTGLNAQSKGQRLGIFDPGEEKREKAREHKPD-EVFWIEMLGRPVPAVNTEEGIRAVNKDKPVDPQSVERYLEKKFSDDLGDVRKAMEEL 127
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: UPI0019B02185 (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI0019B02185)

HSP 1 Score: 83.6 bits (205), Expect = 3.640e-15
Identity = 47/126 (37.30%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:  487 EIKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRT--VEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRAL 858
            +IKINR+PV+ LWA  VA+RL ++ SE++T+G+AVA   A  KG  LG+ E +   E   +++ D+ P +   +E++G+     +T  G+RA  KG+ +  + V  +L + FG++L  AR A+  L
Sbjct:    5 KIKINRAPVLTLWAAVVAERLGYNQSEALTLGKAVAGLNAQSKGRRLGIYE-EKKDEDKGKDKKDEKPDKLEFIELLGRGIPAIKTAHGFRAAIKGEEIDPESVEKYLKQKFGEDLDEARGAMEKL 129
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A7S0BLR5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLR5_9RHOD)

HSP 1 Score: 85.9 bits (211), Expect = 8.870e-15
Identity = 82/254 (32.28%), Postives = 130/254 (51.18%), Query Frame = 1 
Query:  112 DVQGVLRWLV-DAKVPVVKAMPLVSALAAAGVRNADGIALLNEVDLAATVPDKSLLKKIRAKLSGKGMKRSGAAGELSVGANSSSTNKRAKKTSSTTGLDKIVAAAAERAPEPPTSSLSSAKLAEIEIKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLE--ADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKE-GWRALSK-GKLVPAKRVSAFLHKAFGDNLRPARTALRAL 858
            DV  VL  LV   K+ V  AM L+ +L ++GV++   +  L++  L   VPD  + +KI A     G+K+  A      GA  +S        S         AAA     EP   +L+ A L  +E+ +NRSP+M+LWA  VA++  FDW+  +++ +A ADW A +KGE+ G+L+     T +++ RE+ +++    V I     T  + KE G+RAL   G+ +   +   ++ + FG NL  A  A R L
Sbjct:    6 DVPIVLSVLVKQCKIDVRAAMQLIPSLLSSGVKDESSLRGLSDSKLKKVVPDAKIRRKILA-----GLKKKPA------GATKASP-------SXXXXXXXXEAAAEAHIVEPEARTLTPADLKALEVVVNRSPLMILWACSVAKQRGFDWNSCLSLAQASADWYARKKGEYHGILQHKTPPTVDKS-REDLEEIELVGVRINAVRKT--EGKEVGYRALDDDGREISPSKPWTYIRRNFGANLEHAYGACRDL 238
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A7C3NZX3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NZX3_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 2.410e-14
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRAL 858
            + +NR+PV+ LWA  VA+RL FDW ES+T+GRAVA   A  KG  LG+           R +        V+++ +   + +TKEG RALSKG  +  + V  +L   FG  L   R A+  L
Sbjct:    8 VTVNRAPVLTLWAAVVAERLGFDWDESLTMGRAVAGLNACSKGRALGIFHPRPRELEEKRRKLKHGEELQVDLLHRAVPVVRTKEGLRALSKGNPIAPESVHRYLEGKFGAALAAVRKAMTML 130
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: UPI001A96A528 (hypothetical protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A96A528)

HSP 1 Score: 80.9 bits (198), Expect = 3.370e-14
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAA--REETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRAL 858
            I+INR+PV+ LWA  VA+RL  + SE++T GRA++   A  KG HLG+ E   T ER A  R E        V +MG+      T +G  A+SKGK +    V  +L   FGD L P R A+  L
Sbjct:    8 IRINRAPVLALWAAVVAERLGLERSEALTFGRALSGLTAHAKGVHLGIFEP--TPERIAQRRRELGHGDEVQVGLMGRAIPAVHTPKGLMAVSKGKPIAPASVERYLAGKFGDALEPVRAAMAEL 130
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: A0A7Y8HYI1_9BACT (Uncharacterized protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7Y8HYI1_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.770e-14
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRALGS 864
            I+INR+PV+ LWA  VAQRL FDW E++T+GRAVA   A  KG  +GL +      +  R+      T +V+++ +      T +G RAL K K      V  +L   F D L     A+R+L +
Sbjct:   14 IRINRAPVLTLWAAVVAQRLGFDWEEALTLGRAVAGLNAYAKGVSIGLFQPTPKGVKERRQRLRPAETFSVDLLHRAVPAIHTDQGVRALEKDKPADPASVQRYLEGKFKDALPEVCEAMRSLAA 138
[Close]
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Match: UPI00192DB1EF (hypothetical protein n=1 Tax=Belnapia mucosa TaxID=2804532 RepID=UPI00192DB1EF)

HSP 1 Score: 80.5 bits (197), Expect = 4.000e-14
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 1 
Query:  490 IKINRSPVMVLWATEVAQRLSFDWSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEIMGQDFTLRQTKEGWR-ALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRALGS 864
            I++NR+PV+ LWAT VA+RL      ++++G AVA   A  K   LGL E    AE  A       P RT  ++G+D  L   K+G   A + G   PA  V+A+L +AFG  L  AR A+ AL +
Sbjct:    7 IRVNRAPVLTLWATVVAERLGHPPDTALSLGSAVAGTAARAKARRLGLAEEHPHAEGGAAR-----PRRTTRLLGRDIPLAHDKDGVELANAGGHAAPAAPVAAYLARAFGPRLAEARAAMEALAA 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH5_ECTSI7.200e-10773.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7C5Z8P6_9BACT1.230e-1741.73Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A522PXA1_9BACT6.900e-1641.73Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A3N5M0K4_9CHLR1.860e-1539.02Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
UPI0019B021853.640e-1537.30Uncharacterized protein n=1 Tax=Anaerolineales bac... [more]
A0A7S0BLR5_9RHOD8.870e-1532.28Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7C3NZX3_9PROT2.410e-1438.21Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI001A96A5283.370e-1441.60hypothetical protein n=1 Tax=Arenibaculum pallidil... [more]
A0A7Y8HYI1_9BACT3.770e-1437.60Uncharacterized protein n=1 Tax=Bryobacteraceae ba... [more]
UPI00192DB1EF4.000e-1439.68hypothetical protein n=1 Tax=Belnapia mucosa TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:405181..408912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEH5
Model size1391
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.67e-108
EggNOG OGs2E2U1@1|root,2SA0G@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004660.1
Cds size1092
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.97.1prot_P-littoralis_Contig121.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 405289..408721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.4590595-UTR-P-littoralis_Contig121:405180..4052881680789522.4590595-UTR-P-littoralis_Contig121:405180..405288Pylaiella littoralis U1_48UTRP-littoralis_Contig121 405181..405288 +
1680789522.5332563-UTR-P-littoralis_Contig121:408721..4089121680789522.5332563-UTR-P-littoralis_Contig121:408721..408912Pylaiella littoralis U1_48UTRP-littoralis_Contig121 408722..408912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.473137-CDS-P-littoralis_Contig121:405288..4054551680789522.473137-CDS-P-littoralis_Contig121:405288..405455Pylaiella littoralis U1_48CDSP-littoralis_Contig121 405289..405455 +
1680789522.485658-CDS-P-littoralis_Contig121:406124..4063801680789522.485658-CDS-P-littoralis_Contig121:406124..406380Pylaiella littoralis U1_48CDSP-littoralis_Contig121 406125..406380 +
1680789522.4991465-CDS-P-littoralis_Contig121:406876..4070561680789522.4991465-CDS-P-littoralis_Contig121:406876..407056Pylaiella littoralis U1_48CDSP-littoralis_Contig121 406877..407056 +
1680789522.511284-CDS-P-littoralis_Contig121:407470..4076181680789522.511284-CDS-P-littoralis_Contig121:407470..407618Pylaiella littoralis U1_48CDSP-littoralis_Contig121 407471..407618 +
1680789522.5224035-CDS-P-littoralis_Contig121:408380..4087211680789522.5224035-CDS-P-littoralis_Contig121:408380..408721Pylaiella littoralis U1_48CDSP-littoralis_Contig121 408381..408721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.97.1

>prot_P-littoralis_Contig121.97.1 ID=prot_P-littoralis_Contig121.97.1|Name=mRNA_P-littoralis_Contig121.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=364bp
MDVQGVLRWLVDAKVPVVKAMPLVSALAAAGVRNADGIALLNEVDLAATV
PDKSLLKKIRAKLSGKGMKRSGAAGELSVGANSSSTNKRAKKTSSTTGLD
KIVAAAAERAPEPPTSSLSSAKLAEIEIKINRSPVMVLWATEVAQRLSFD
WSESVTIGRAVADWLALRKGEHLGLLEADGTAERAAREETDDLPTRTVEI
MGQDFTLRQTKEGWRALSKGKLVPAKRVSAFLHKAFGDNLRPARTALRAL
GSWRHRCACVSRSRPDARGMHVCSRRKVVRTGSVSRHCFLASKSHSWQDL
KKNWDYRQSRRRTDVDSIICAGNLTPLSFLAAAKVNGGLNGNSSPSGSVD
KKFGSGAIASLVN*
back to top

mRNA from alignment at P-littoralis_Contig121:405181..408912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.97.1 ID=mRNA_P-littoralis_Contig121.97.1|Name=mRNA_P-littoralis_Contig121.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3732bp|location=Sequence derived from alignment at P-littoralis_Contig121:405181..408912+ (Pylaiella littoralis U1_48)
AGGGGAGGTTCAGCTTGCAACTCTGCAAAACCCAGCACGTCAACTGCGCC
ATGTCTGGCGTCTGTCTGGCCCTGTTGTTCTTCAACCAACAGGTTGCCCA
CCGATAGGATGGACGTGCAAGGTGTGCTACGATGGCTGGTTGACGCTAAA
GTCCCGGTGGTAAAGGCTATGCCACTCGTTAGCGCGTTGGCGGCGGCTGG
AGTCCGAAACGCGGATGGAATCGCCTTGTTGAACGAAGTCGACCTTGCTG
CCACCGTCCCCGACAAATCCCTCTTGTAAGTGCTTGCCTCGCGACACCTC
TCCGCCTGCGGTACCAAACAATACACGGCCCATTTGTGCGGGAGGAAAAT
GCTGTGTAGGCCTCTAGACCCGTACGGTACTCGCGGCGAACTGCGGGCGC
CGTTTTGGGCTTTCCAAACTGAGCATCTAAATAATGCCAATTTGTGCTGT
TTGGCGCCGTGACACAACCCTCTCTATTATACTTGTACCCGTGCTGCTTT
TTACTTCGAAATATGATACAGCAGTACCGCCCCACTCACAAGAAACACCT
ATTTTGAGCGAGGCTCGAGACTTTATCTTGTCTCGCAACCAAGTACAGGC
TGTTTCCTAGCCAATACGTATGTAGGATTTAAGTGTGTGGCGCCTGTCGC
TGAGCCCAATTTCTTAGGCCGAATTTCTTGTTTTTTTTTATAATCTGAGG
CTGGATTTCTCATGTTGAAGATGTTTCTATGAAGGCCGGTACTCCTGTAT
GTACGAAGTACTTTCGTGTCCCAGGTATCATACCTGGCACCCGCGGTATG
ATTTACCTTACGTGGCGATCGTGTGGAACAAACTCGAACAGCGAGCAAGC
GAGGAGACCCGATGTGGGCCTCCCTTCGGTTGTCGGTTGCATTTACCTTC
TCGTTTTCTTTACTCGCACACATGTATGTGTATGCCTCGCACAGGAAGAA
GATTCGCGCCAAGTTATCGGGCAAAGGGATGAAACGCTCTGGAGCTGCCG
GGGAACTTTCTGTCGGAGCCAACAGCAGCAGCACAAATAAGAGAGCGAAA
AAGACTTCTTCGACAACCGGGCTTGACAAAATCGTTGCGGCCGCGGCCGA
GCGCGCGCCGGAGCCTCCGACTTCCTCGCTATCGAGCGCGAAACTGGCCG
AAATCGAGATCAAGATAAATCGCTCGCCGGTGATGGTGCTCTGGGCTACG
GTAAGCGCCGTTCGCGTGTAAAGTTATACTACTATTACTGCTGTCGTTCG
GTAACCTTAAGCTTCGCAATGCATCGTGCATTTGCGATCACCGCCCGGGC
CATACCATGAGCTAACGCAAGAAACAACAAGAATCACAGCAACGAAGAAG
AGGGGGGCACGGGCGTGCTGTCGGCCCAGCTTGTTGCTCTCGAAAGGTGA
AAAGGGAGTGGCAGAAAGAGCGACGGAACAGAAGGCCTATCACTTATGCG
AAGCACGTTATGAGCTGCGACGTACCAAGTATTAAGTAGGTTTCTCAGAA
TGCACGGACCACCGTCGTAGTCGTACATAGCTTCCACCCTCCACCTCTCC
CGCCGACCTACCAACCTACCCCCCACCCACCCACCCACCCCGAACTGCAG
GGTCTCAATCTAAACGAGAAAACGACGGTGCGCACGCTTTTCAGTCTTGA
CGTGCCGCCCGCCCTCTGCGCGTTTTTGTCACACACGAGGCAACAGGAGG
TGGCACAACGGCTGTCGTTTGATTGGAGCGAGTCGGTCACCATCGGCCGC
GCTGTCGCCGATTGGTTAGCCCTGAGAAAGGGGGAGCATCTAGGCCTGCT
GGAAGCAGACGGGACCGCAGAGCGGGCTGCGAGGGAAGAAACCGACGACC
TGCCAACCCGCACTGTGGAGATAATGGTGAGACCGTAATCCGTAATCCGT
CATGTACAGGCTCAACCACCCCAAAACAATGCGGCCCCGCACGTACGAGT
ATTGGTAGATGCATTCCAAGGCACAGGTATTTTCGAAGCAAGCCGCCACG
GGGTTATGTAAACTGCTGTTGTAGAGGGAACCAAGTTTCAATGGCCCGAA
TTCCTCCGGGGCACCGTGCTTCAACTCGGTGTCGCCGGCGTCGGAGGGGG
TGCTTGTTTGAATGGCCAGATAACACATAACAGGCAAGAGAGCCACGCCC
TCCCCCCCCCACGCGCGCGGGTGTTTGTCTAATCGATCCGCTCATTGCTC
ATTGGCTTGGTGGTCTCAACTAGCGGCATGTTCTGTTTCGTTTCGGCGAC
GGGTGCTTGTTTCTGTTTTTCGTCGGTAAACTGTTTCCAGGGGCAAGACT
TCACGCTCCGGCAGACGAAGGAGGGGTGGCGGGCGCTCAGCAAGGGCAAG
CTGGTCCCGGCGAAAAGGGTGTCCGCATTTCTTCACAAGGCCTTCGGGGA
CAACCTGAGACCAGCCCGAACGGCTCTGCGCGCTCTAGGTGCGTGCGCGA
CGGGAAAGGCTTTTGGCTTGTGGTGCGCTTCGCATGTTGGCCCTCCGGCG
GATCGGAGAGTTTATAGCTTGGACTGCTGACTGTACACGTCAATTTTCGT
CGTAATTTTGATGCATGGCGCTCCTTGTTTGTCACCGTCACTTTATCATG
CCAGGTGCCATTTCTGTGAACTATGTTTGAAAATCTTTTTTGTGCCACCA
CAACCGGATGCCAAGAACGCCCAGATTGAGTTACAGCCAACGAGAGGTCT
TGGTGTATCTACCAATTCTCGAACTGATAGCCGAAGGCCCCCGTCTTCTC
ACCACCGTTCCCGATGCCATGATCATATTACTCCGCTATCTGCAGCGGCG
GCGGTAACGGTAGCAAGTCTTAGTGCTACGCTTTGTACTTTATGAGAAAC
ACGTACAATCTCGTTCTGATACACCGCCGACAGTGCTCGATCCTTTTTAC
GAGCGTGCATTTCGAGACACAGACCGTTGAAATATCTTCCCAGCAAGCAC
CAGTGGACCGTTGCAAGACGTGGAGGTCGCCTTCGTAGCCAACGCATTTT
CACGAGTATCATATCATTGAAAAATCACGCCGATTCCCTCGGCATGAGTA
TACATATGATATGATATATCATATCATATGAGCATGATACGAAATTTTTC
AAAATTTGGACGTTTTTGCACTTGCGCAAGAGGAAGAACTTTTCCGACGA
CGGCACACCGTCTCTATCGCCGCGCGATTCATCTGTGATGCGCGCAGCAG
GCTCGTGGCGACACCGATGCGCGTGTGTATCTCGGTCTCGCCCCGACGCC
CGTGGCATGCATGTGTGCTCGAGGCGCAAAGTCGTCCGCACTGGCTCTGT
TTCGCGGCATTGTTTTCTGGCAAGCAAGAGCCATTCATGGCAGGATCTAA
AAAAAAACTGGGATTATCGCCAGAGCAGGAGGAGAACCGACGTTGACAGC
ATAATCTGCGCTGGAAATCTGACGCCCCTCTCATTCTTGGCAGCTGCAAA
AGTGAACGGAGGACTAAATGGCAACAGTTCGCCGTCGGGCTCCGTGGACA
AGAAATTTGGTTCAGGAGCGATAGCATCATTGGTGAATTAGTCGATTGCC
GGGTACACCAGTATTACACACGTGGGGTACATACATAGCCAGCAGTCGTG
GCCGGCCGACTGACGTGTGCCGTCAACACATGTATATGATATACCACGAC
ACGACAGCAGAAGTGGGTCAGAGAGTGACTTGGTGCACGGACGACGTCGT
TGCGGACCAGGGGAGGAAAGGTGGCAGACCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig121:405181..408912+

>mRNA_P-littoralis_Contig121.97.1 ID=mRNA_P-littoralis_Contig121.97.1|Name=mRNA_P-littoralis_Contig121.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1092bp|location=Sequence derived from alignment at P-littoralis_Contig121:405181..408912+ (Pylaiella littoralis U1_48)
ATGGACGTGCAAGGTGTGCTACGATGGCTGGTTGACGCTAAAGTCCCGGT
GGTAAAGGCTATGCCACTCGTTAGCGCGTTGGCGGCGGCTGGAGTCCGAA
ACGCGGATGGAATCGCCTTGTTGAACGAAGTCGACCTTGCTGCCACCGTC
CCCGACAAATCCCTCTTGAAGAAGATTCGCGCCAAGTTATCGGGCAAAGG
GATGAAACGCTCTGGAGCTGCCGGGGAACTTTCTGTCGGAGCCAACAGCA
GCAGCACAAATAAGAGAGCGAAAAAGACTTCTTCGACAACCGGGCTTGAC
AAAATCGTTGCGGCCGCGGCCGAGCGCGCGCCGGAGCCTCCGACTTCCTC
GCTATCGAGCGCGAAACTGGCCGAAATCGAGATCAAGATAAATCGCTCGC
CGGTGATGGTGCTCTGGGCTACGGAGGTGGCACAACGGCTGTCGTTTGAT
TGGAGCGAGTCGGTCACCATCGGCCGCGCTGTCGCCGATTGGTTAGCCCT
GAGAAAGGGGGAGCATCTAGGCCTGCTGGAAGCAGACGGGACCGCAGAGC
GGGCTGCGAGGGAAGAAACCGACGACCTGCCAACCCGCACTGTGGAGATA
ATGGGGCAAGACTTCACGCTCCGGCAGACGAAGGAGGGGTGGCGGGCGCT
CAGCAAGGGCAAGCTGGTCCCGGCGAAAAGGGTGTCCGCATTTCTTCACA
AGGCCTTCGGGGACAACCTGAGACCAGCCCGAACGGCTCTGCGCGCTCTA
GGCTCGTGGCGACACCGATGCGCGTGTGTATCTCGGTCTCGCCCCGACGC
CCGTGGCATGCATGTGTGCTCGAGGCGCAAAGTCGTCCGCACTGGCTCTG
TTTCGCGGCATTGTTTTCTGGCAAGCAAGAGCCATTCATGGCAGGATCTA
AAAAAAAACTGGGATTATCGCCAGAGCAGGAGGAGAACCGACGTTGACAG
CATAATCTGCGCTGGAAATCTGACGCCCCTCTCATTCTTGGCAGCTGCAA
AAGTGAACGGAGGACTAAATGGCAACAGTTCGCCGTCGGGCTCCGTGGAC
AAGAAATTTGGTTCAGGAGCGATAGCATCATTGGTGAATTAG
back to top