mRNA_P-littoralis_Contig121.9.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig121.9.1 vs. uniprot
Match: D7FWR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR2_ECTSI) HSP 1 Score: 272 bits (695), Expect = 3.910e-77 Identity = 293/770 (38.05%), Postives = 358/770 (46.49%), Query Frame = 1
Query: 1 MNRLDHLESALWKAHGIEANEEAICETQKMQQAHKTERATLEAHLRRRRYRLEQSCSGQVRALKKAHEARLAGLG-RAVAPVVALQSVAGDSTEGGEAPPPATVKGAPPANSSAGALAVMVAERRGENTXXXXXXXTTITPAATAEG---ETPTLDRRAEGEVGVGVVRDVDYS----PFVGQTQEASAVSVVQTRAMAAATVVPAATEVATDPPRKNRALVELRSELGRQLAAVAHALDGGQQLKEATRVMREIEKLEALHRLEAEARGVLGGISLEITTLQLKQAQAEEIQGDKHERLRRTLDCSGKEELYLLSARQKGTLGRLAVRCRAEKRRRQVELRDELAAVKSGVARVWREHNRSRCXXXXXXXXXXXXXXXXXXXXXXXXXGRGLFALSSSSGR---QDDNVAHGKKSD--------------------------------------GIMLSVAGNGGKGEGEE----------ISAGGRGSRALGSTAGENPPAIPSPADAV---KVESGTGAAXXXXX-TNKKHTKHTESRTVSXXXXXXXXXXVNTVRTLTGRRVKNSGSRGRGLQRRVRRAIPSAETTTAGIATAAAPKSSAVTTNHTDDSNGVFILAGGTFGVLSEEEAQALAALGRGASRDPRLLLSESPPQXXXXXXXXXXXXXPESPWWAIRQDLPHEASELAELVPDNGLRSGDGRGDG-VGGGRFVRVGGDCGGMMSGSAGGRNVGRCPIDMLERAADKLARRIQAEEDLSRRRLGMASVPS 2118
M+ LD LESALW+AHG EA + ET+ +++ H +ERA LEA L+RRR RLE++CS QVR L +AH +L + A A V + + + PPP T + AGA A R E T+ G E T D + E G + + PF G A V+ T A V D R NR LV LRS+LGR LAAVAH +D G+ LKEATRVMREIE+LEA R + ARG G ISLE TL KQAQA+E+Q DKH RLRR L+ G EEL LLSARQKG+LGRLA R R RRRQ+ELR +LA VK +AR WREHNRS+C XXXXXXXXX Q + HGKK G + AG G K EG + +G G + T G P + + A AV K E+GTG A TNK K + + T R S+ RG +RR+R A A AA S+A T+ D ++ GGTFGVLSEEEAQALAALGRGA D RLLL S P + + + H SE V +G GD G+G VG + +GG GG + S + G ++L+ A DKLAR IQAEEDLSRRRLGM VPS
Sbjct: 1 MDNLDGLESALWEAHGREARAAVLLETRNLRRTHASERAALEADLQRRRERLEEACSRQVRTLLQAHNEQLTQVDPTAFATAVGDGGGSREDKVKHDEPPPMTTTDSVEIRPLAGAAAPEAGTRSSETIGIPAATLPTVAECLQEAGRQEEAQTKDGQKEQRFGHESLPRTRHEKLQLPFAGMGSAAPVVATAVTGA------------VVVDRTRSNRELVGLRSDLGRHLAAVAHVVDRGRYLKEATRVMREIEELEA--RDKTNARGGFGTISLEKATLLQKQAQAKEVQADKHNRLRRALESLGAEELRLLSARQKGSLGRLAARSREGTRRRQMELRGKLAVVKRSIAREWREHNRSQCRRSGGLLSSDDVDEGAXXXXXXXXXXXXXXXXXXXXXXXXXQQQDPVHGKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTXXGAEEAGAGTG-KAEGPSGGISATGVSLVLSGNHGPDHVECTTGRLP--LDTVAAAVVQGKSENGTGTAPDLESGTNKAQAKGPTAVPATQSNQPPAPTAGFTSRA----------SKDRG-ERRLRXXXXXX----AARAAAAYLVSAADTSLPKDTADDALTAGGGTFGVLSEEEAQALAALGRGAPSDARLLLLASSPSPARDGRQQRQLEPSSRAYQGL---VLHGESEQTAEVQRDGFEIGDYHGNGDVGDDYVLGIGGVSGGGTTTSNSTKRGGYLE-EVLDSAMDKLAREIQAEEDLSRRRLGMTPVPS 734
BLAST of mRNA_P-littoralis_Contig121.9.1 vs. uniprot
Match: A0A6H5JDU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU2_9PHAE) HSP 1 Score: 238 bits (606), Expect = 8.260e-65 Identity = 285/771 (36.96%), Postives = 347/771 (45.01%), Query Frame = 1
Query: 1 MNRLDHLESALWKAHGIEANEEAICETQKMQQAHKTERATLEAHLRRRRYRLEQSCSGQVRALKKAHEARLAGLGRAVAPVVALQSVAGDSTEGGEAPPPATVKGAPPANSSAGALAVMVAERRGENTXXXXXXXTTITPA---ATAEGETPTLD----RRAEGEVGVGVVRDVDYSPFVGQTQEASAVSVVQTRAMAAATVVPAATEVATDPPRKNRALVELRSELGRQLAAVAHALDGGQQLKEATRVMREIEKLEALHRLE--AEARGVLGGISLEITTLQLKQAQAEEIQGDKHERLRRTLDCSGKEELYLLSARQKGTLGRLAVRCRAEKRRRQVELRDELAAVKSGVARVWREHNRSRCXXXXXXXXXXXXXXXXXXXXXXXXXGRGLF----ALSSSSGRQDDNVAHGKKSDGIMLSV------------------------------------AGNG-GKGEGEE----------ISAGGRGSRALGSTAGENP-PAIPSPADAVKVESGTGAAXXXXX-TNKKHTKHTESRTVSXXXXXXXXXXVNTVRTLTGRRVKNSGSRGRGLQR-RVRRAIPSAETTTAGIATAAAPKSSAVTTNHTDDSNGVFILAGGTFGVLSEEEAQALAALGRGASRDPRLLLSESPPQXXXXXXXXXXXXXPESPWWAIRQDLPHEASELAELVPDNGLRSGDGRGDGVGGG-RFVRVGGDCGGMMSGSAGGRNVGRCPIDMLERAADKLARRIQAEEDLSRRRLGMASVPSW 2121
M+ LD LESALW+AHG EA A+ ET+ ++ AH + ++ + G R K H+ PPP T + AGA A + R E T+ A +GE T D +R E G + PF ASAV+ T A V D R NR LV LRS+LGR LAAVAH +D G+ LKEATRVMREI+KLEA + E A ARG LG I+LE TL KQAQA+E+Q DKH RLRR L+ G EEL LLSARQKG+LGRLA R RRRQ+ELR +LAAVK +AR WREHNRS C XXXXXXXXXXXXX ++ S+G+ D V HGKK AG G GKGEG + + +G L T G P + + A K E GTG TNK + + + T+R S+ RG +R R RR +A A +A+AA T+ D +N GGTF VLSEEEAQALAALGRGA D RLLL S P ES A + + HE SE V +G GD G+G GG + VGG GG + S + G +L+ A +KLAR IQAE DLSRR+LGM VPSW
Sbjct: 1 MDNLDGLESALWEAHGREARAVALLETRNLR-AHNEQLTQVDPTA----FTTAVGDGGGSREDKVEHDE----------------------------PPPMTTTDSVEIRPLAGAAAPEASTRSSETIDIPTATLPTVAECLQEAGRQGEAQTEDGQKGQRFRHESLPGTRHEKLQLPFAAMRTAASAVATAVTGA------------VVVDRTRSNRELVGLRSDLGRHLAAVAHVVDRGRHLKEATRVMREIDKLEARDKAEVGANARGGLGTINLETATLLQKQAQAKEVQADKHHRLRRALESLGVEELRLLSARQKGSLGRLAAHSRERTRRRQMELRGKLAAVKRSIAREWREHNRSHCRRSGGLLSSDDVXXXXXXXXXXXXXXXXXXXXXXSVVPSAGQHQDPV-HGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTERGAKEAGAGPGKGEGPDGGISATGVNLVLSGNHEPDDLECTTGTLPLDTVSAAAVEEKSEDGTGTVPDLESGTNKAQAEVRTAVPATQPNQPPAPTAGFTIRA----------SKDRGERRLRTRRKRVAARAAAAYLASAAD------TSLSKDTANDALTAGGGTFSVLSEEEAQALAALGRGAPSDARLLLLVSSPSPARDGPQQHQF---ESSSRAYQGLVLHEESEQTAEVQRDGSEIGDYHGNGDGGDDEVLGVGGVSGGGTTTSNSIKRGGSLE-KVLDSAMNKLAREIQAEHDLSRRQLGMTPVPSW 705 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig121.9.1 >prot_P-littoralis_Contig121.9.1 ID=prot_P-littoralis_Contig121.9.1|Name=mRNA_P-littoralis_Contig121.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=708bp MNRLDHLESALWKAHGIEANEEAICETQKMQQAHKTERATLEAHLRRRRYback to top mRNA from alignment at P-littoralis_Contig121:49786..52838- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig121.9.1 ID=mRNA_P-littoralis_Contig121.9.1|Name=mRNA_P-littoralis_Contig121.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3053bp|location=Sequence derived from alignment at P-littoralis_Contig121:49786..52838- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig121:49786..52838- >mRNA_P-littoralis_Contig121.9.1 ID=mRNA_P-littoralis_Contig121.9.1|Name=mRNA_P-littoralis_Contig121.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2124bp|location=Sequence derived from alignment at P-littoralis_Contig121:49786..52838- (Pylaiella littoralis U1_48)back to top |