mRNA_P-littoralis_Contig121.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.82.1
Unique NamemRNA_P-littoralis_Contig121.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.82.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.390e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:  261 KAGRELLNGKDWYLQEAYRAENQ----------------------------YTKFLAKWMRGLLGDFSTLSEMGDTMDKFFASAPGFVKKEEAKALRSREEA 482
            +AG+ LL+G +WY QEAYRA+NQ                            + KFLAKWMR L GD+ +   + DT+D+FFASAPGFV++E+ +A+  R++A
Sbjct: 1348 EAGKALLSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVDTIDQFFASAPGFVREEKERAVVLRQQA 1449
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZN2_9PHAE6.390e-1241.18Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:344573..347947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEJ0
PFAMsDEAD_2,Helicase_C_2
Model size1851
Max annot lvl2759|Eukaryota
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.03e-12
EggNOG OGsCOG1199@1|root,KOG1132@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size1404
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789518.683184-UTR-P-littoralis_Contig121:344572..3445891680789518.683184-UTR-P-littoralis_Contig121:344572..344589Pylaiella littoralis U1_48UTRP-littoralis_Contig121 344573..344589 +
1680789518.744253-UTR-P-littoralis_Contig121:347517..3479471680789518.744253-UTR-P-littoralis_Contig121:347517..347947Pylaiella littoralis U1_48UTRP-littoralis_Contig121 347518..347947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789518.7017124-CDS-P-littoralis_Contig121:344589..3449011680789518.7017124-CDS-P-littoralis_Contig121:344589..344901Pylaiella littoralis U1_48CDSP-littoralis_Contig121 344590..344901 +
1680789518.718149-CDS-P-littoralis_Contig121:345768..3458521680789518.718149-CDS-P-littoralis_Contig121:345768..345852Pylaiella littoralis U1_48CDSP-littoralis_Contig121 345769..345852 +
1680789518.7303903-CDS-P-littoralis_Contig121:346509..3475171680789518.7303903-CDS-P-littoralis_Contig121:346509..347517Pylaiella littoralis U1_48CDSP-littoralis_Contig121 346510..347517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.82.1prot_P-littoralis_Contig121.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 344590..347517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.82.1

>prot_P-littoralis_Contig121.82.1 ID=prot_P-littoralis_Contig121.82.1|Name=mRNA_P-littoralis_Contig121.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=468bp
MKGGGGGRGVGGVGGAAAALRRLMQQRRQQHQQHQQQRGMAAIGPVGTPK
EAEAKVAATLKEAAAAAAAEEAEAAKAKAAAKAGRELLNGKDWYLQEAYR
AENQYTKFLAKWMRGLLGDFSTLSEMGDTMDKFFASAPGFVKKEEAKALR
SREEAGARRRARAEERAAAAAAALAATSAALEGAPASGGGGGSGGVENAR
AEGTRVASSSGGGEIEAGDNRSSTIGGSGGGPDDVRFCVSEVDDARGQEQ
NHQQHPSIVTPLPSSEVHPTFASTPAAGSSSPSVDVVLPSPSPPLPVETP
PLRAGSQCPRLAAIASSTARDCVIGVGIGDGSWPSSAGGAGGRASAQEQQ
RLPPEAALRDRHGRSCGVGGVDIVESGFGSGVGVGGLGGSRGSGSGHCTP
TSNGSRSGRREVAGLAEGTPVDDDDDDEGEQDEQVDGEFIDLTASDVVLA
QDQRQEAAISLLYDVGD*
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mRNA from alignment at P-littoralis_Contig121:344573..347947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.82.1 ID=mRNA_P-littoralis_Contig121.82.1|Name=mRNA_P-littoralis_Contig121.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3375bp|location=Sequence derived from alignment at P-littoralis_Contig121:344573..347947+ (Pylaiella littoralis U1_48)
GTGGAGAGGGCTGCGACATGAAAGGGGGCGGCGGCGGCCGAGGGGTGGGA
GGGGTGGGAGGGGCGGCGGCGGCGCTGCGGCGGTTGATGCAGCAGCGGCG
GCAGCAGCACCAGCAGCACCAGCAGCAGCGCGGTATGGCGGCGATAGGGC
CGGTCGGGACGCCGAAGGAGGCCGAGGCGAAGGTGGCGGCGACGCTGAAG
GAGGCCGCGGCCGCGGCGGCGGCGGAGGAGGCGGAGGCGGCGAAAGCAAA
GGCGGCCGCGAAGGCCGGCAGAGAGCTGCTGAACGGCAAGGATTGGTACC
TTCAGGAGGCGTATAGAGCTGAGAACCAGGTTCGTTTTCTTAGTTTTTTT
CATACTTCGAAGTATGTGATATCTTCCTCTGTGTACTTCCTCTGCATTGC
CGCTCCTTTTTCGCAAAAGGGTTCAGATGGACAAAAAGGGCGGGGAATAT
ATCTTCGTTCTGCTTGTGGAATCCAATCAATCGATGTGGGGGCGGAAGTT
CCTCCCTGCGTTGGTTCGATGCCTGGTGACTCACGCGGGGTATTAAACTT
TCCGGGGGGGGGTGGGGGGGGTGGGGGGGTGGCGGCAGGGATGTCACAGA
GGAGACGACGCGAAGATAGACCGTACAACGGTACCACGCACGTCAGAACA
TTCTGCCGACCCTTTCGAGCTCACTGTCGGATAGAATCACACCACCATGG
GATGTATGTGTGCATGCCTCATGTACATTCTACATTCTGCCCATTCACTG
TAGCCGGGACACAGACGTCCGACCAACTTAGAAGCCAAAACCAAGAAGTT
ACAGTATGTATCACAGGTTTTGCCCCGGACAGACCGAGTTGATTTTTTTT
TCGTGTTTGGCCGTGCAGCCTTGTGGACACAACAAAGGGAGAGGTTGCAG
GGTGCGTGTGTAAGTGGAAGGGTTTTGTAGGGCGCGAGGCGTCATTGTCT
TCCGCGTAAGCGCGCGCGCTTCGGCGTGACTGTTTTTGTCGTTCGGAAAT
GTTTTGGAAAAATATCGGAATGGTTTTTGACGGGGACCTGCGATGATATT
CCCTCCGTCCCCGCGTTCTACCTTCCCACGTGCCCCCCCTCTCCTTGTGT
TCGATTGTCCAGGCCCTCGGGAGGTGCATCCGCCACATTTACGACTACGG
CGTGATATGCCTCATCGATCAGCGCTTCCAATCTGGCAGCAAGCAGTACA
CGAAGTTTCTTGCCAAGTGGATGCGGGGTCTGTTGGGGGATTTCTCTACC
CTTTCGGAAATGGGGGACACGATGGACAAGGTTCGTAAAGGATGGGGGGG
GTGTCCTCTCTGTCTCTCTCTCTTTCTGTTGTTTGGTTTGACAACATGTT
TTTTTTGTGCAAGACGCGTTCGAAGATTGCACGCCCTAGAAGGAGCTACG
TCCGTGAAACTCGATTTTTTCTTTGCCTTGAGGGATGCGCTTGGTGATAC
GTCGACCGCGGCCATGTTGCTTTTTGCTTGTGACTCACGTCGTGTACACA
TGCGTCAAACGTCACAGCCCAGACCGTTCGAGCGAACCATTCGGTGTGCA
GTGGCTTATTTTTTGCCTGCGAGTATGATGCGTGTGTTCGCATATGAAAC
AAGTACGTTACGCCAAAAGCGTTCGAGCGAACGACTCGATGCAGGTGCGG
GTCTGTTGGATTGAGACAAGCAAAACCGCACGGCCGCACTTGCTTACAGA
CAACGGCAATGAGAGAGACTCAGCCATTTCCCTCCGCTCGCTGTGCTGCT
CGTTATTTGTCTCCCCCCGCTCCCGTTCCCCCCCCTATTGTGGCCAAGTC
TTGTGCGGCGTAATTTATATGCACGGAAGGACTTGAACCACCCACCCACC
CCCCCCCCCGCCCTCCTTTTTGCTTTTTCGCTCGACCGGCCGGTGGGTTC
GTGCGTCGAAAAATCATATGTTGTAACCAAAACTTAGTTCTTCGCGAGCG
CTCCAGGCTTCGTCAAGAAGGAGGAGGCCAAGGCCCTGCGGTCAAGAGAA
GAGGCGGGAGCTCGGCGGCGTGCTCGGGCAGAAGAGCGAGCCGCTGCCGC
TGCTGCGGCCCTGGCCGCCACTTCGGCCGCTCTGGAAGGCGCACCTGCAA
GCGGCGGCGGCGGCGGCAGCGGTGGTGTTGAGAACGCGAGGGCGGAAGGT
ACGCGCGTCGCTAGCTCCAGCGGCGGCGGCGAGATTGAGGCGGGAGACAA
CAGGAGCAGTACCATCGGTGGTAGTGGTGGTGGTCCTGATGATGTTCGCT
TCTGCGTGTCCGAAGTGGACGATGCTCGAGGACAAGAACAGAACCACCAG
CAACACCCGTCCATCGTCACTCCCCTGCCGTCGAGCGAGGTCCATCCCAC
TTTCGCCTCCACTCCTGCCGCCGGCTCGTCCTCTCCTTCTGTCGATGTGG
TGCTGCCGTCGCCATCGCCGCCGCTGCCGGTGGAGACACCGCCGTTGCGC
GCGGGTAGCCAATGCCCACGCCTCGCCGCCATCGCCAGCAGCACCGCCCG
TGACTGCGTTATCGGCGTCGGTATCGGCGACGGTAGCTGGCCCTCTTCGG
CAGGAGGAGCGGGCGGCAGGGCTTCCGCACAAGAACAGCAACGCCTGCCG
CCAGAGGCGGCGCTGCGAGATCGACACGGAAGAAGCTGCGGCGTGGGTGG
TGTTGATATCGTTGAAAGTGGTTTTGGGTCTGGGGTCGGTGTTGGTGGTT
TGGGCGGCAGCAGGGGTAGTGGCAGTGGCCACTGCACACCCACAAGCAAC
GGCAGCCGCTCGGGAAGAAGGGAGGTTGCGGGGCTGGCGGAGGGTACTCC
TGTCGACGATGATGATGATGATGAGGGGGAGCAGGACGAGCAGGTCGACG
GTGAATTCATTGACCTCACCGCCTCCGATGTAGTGCTCGCTCAAGACCAG
CGGCAGGAGGCGGCTATTTCCCTCTTGTACGACGTTGGCGATTAGTTCGT
TCCGGCACAAAGACGTTTCTTGCACACATATACACACCCGTGAGACGTGG
AACATCTCCGGACGTCGTTGGTTGGTCTGAAGTAATTCAAGCCAGGTGGT
CAAATCTTTGCACCAGTTGAAAGGACTTGGGGAGAAATGAAAAAGTAGTG
GCCCCATTTTTGGGAGATGAGACAGAGAATCCTACTGTTGTGTCGGGCGT
GTTACAGGAGAAACACACGAATGACAAACACTATCATGGTCTGAGAAGTG
GCTCAGCGATGTAGTCTAGACAGTCGGTTGATTGTCTTCAGTGTTTGAGT
CAGTGCTGCTCAAGAGGAGTGCTCTCGACTTAATCTAACGGCCACCCGGT
GAAATTTTGAGCGTCTTTTGACCCACATGACATCGAGTACATTCCCCGGG
CAGGGACTTATAAACTCAGCTGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:344573..347947+

>mRNA_P-littoralis_Contig121.82.1 ID=mRNA_P-littoralis_Contig121.82.1|Name=mRNA_P-littoralis_Contig121.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1404bp|location=Sequence derived from alignment at P-littoralis_Contig121:344573..347947+ (Pylaiella littoralis U1_48)
ATGAAAGGGGGCGGCGGCGGCCGAGGGGTGGGAGGGGTGGGAGGGGCGGC
GGCGGCGCTGCGGCGGTTGATGCAGCAGCGGCGGCAGCAGCACCAGCAGC
ACCAGCAGCAGCGCGGTATGGCGGCGATAGGGCCGGTCGGGACGCCGAAG
GAGGCCGAGGCGAAGGTGGCGGCGACGCTGAAGGAGGCCGCGGCCGCGGC
GGCGGCGGAGGAGGCGGAGGCGGCGAAAGCAAAGGCGGCCGCGAAGGCCG
GCAGAGAGCTGCTGAACGGCAAGGATTGGTACCTTCAGGAGGCGTATAGA
GCTGAGAACCAGTACACGAAGTTTCTTGCCAAGTGGATGCGGGGTCTGTT
GGGGGATTTCTCTACCCTTTCGGAAATGGGGGACACGATGGACAAGTTCT
TCGCGAGCGCTCCAGGCTTCGTCAAGAAGGAGGAGGCCAAGGCCCTGCGG
TCAAGAGAAGAGGCGGGAGCTCGGCGGCGTGCTCGGGCAGAAGAGCGAGC
CGCTGCCGCTGCTGCGGCCCTGGCCGCCACTTCGGCCGCTCTGGAAGGCG
CACCTGCAAGCGGCGGCGGCGGCGGCAGCGGTGGTGTTGAGAACGCGAGG
GCGGAAGGTACGCGCGTCGCTAGCTCCAGCGGCGGCGGCGAGATTGAGGC
GGGAGACAACAGGAGCAGTACCATCGGTGGTAGTGGTGGTGGTCCTGATG
ATGTTCGCTTCTGCGTGTCCGAAGTGGACGATGCTCGAGGACAAGAACAG
AACCACCAGCAACACCCGTCCATCGTCACTCCCCTGCCGTCGAGCGAGGT
CCATCCCACTTTCGCCTCCACTCCTGCCGCCGGCTCGTCCTCTCCTTCTG
TCGATGTGGTGCTGCCGTCGCCATCGCCGCCGCTGCCGGTGGAGACACCG
CCGTTGCGCGCGGGTAGCCAATGCCCACGCCTCGCCGCCATCGCCAGCAG
CACCGCCCGTGACTGCGTTATCGGCGTCGGTATCGGCGACGGTAGCTGGC
CCTCTTCGGCAGGAGGAGCGGGCGGCAGGGCTTCCGCACAAGAACAGCAA
CGCCTGCCGCCAGAGGCGGCGCTGCGAGATCGACACGGAAGAAGCTGCGG
CGTGGGTGGTGTTGATATCGTTGAAAGTGGTTTTGGGTCTGGGGTCGGTG
TTGGTGGTTTGGGCGGCAGCAGGGGTAGTGGCAGTGGCCACTGCACACCC
ACAAGCAACGGCAGCCGCTCGGGAAGAAGGGAGGTTGCGGGGCTGGCGGA
GGGTACTCCTGTCGACGATGATGATGATGATGAGGGGGAGCAGGACGAGC
AGGTCGACGGTGAATTCATTGACCTCACCGCCTCCGATGTAGTGCTCGCT
CAAGACCAGCGGCAGGAGGCGGCTATTTCCCTCTTGTACGACGTTGGCGA
TTAG
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