mRNA_P-littoralis_Contig121.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.59.1
Unique NamemRNA_P-littoralis_Contig121.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 9.800e-144
Identity = 229/261 (87.74%), Postives = 232/261 (88.89%), Query Frame = 1
Query:    1 QQGMQFPMEVPPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 783
            QQGMQFPMEVP TLVKFDPPIFAGLEPSSD N   NG   +         XXXXXXXX     +QGK SQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVI LQEQLD KLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIA L E+KK LELHVSELRNKVEVIEKGESERR VDDKKRKEEVDFLKYQGQHLDSFLKQIGG
Sbjct:   13 QQGMQFPMEVPQTLVKFDPPIFAGLEPSSDPN---NGGD-NALLMGGNGGXXXXXXXXMGGKGQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 269          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA)

HSP 1 Score: 318 bits (815), Expect = 5.850e-107
Identity = 170/253 (67.19%), Postives = 194/253 (76.68%), Query Frame = 1
Query:   31 PPTLVKFDPPIFAGLEPSS-DANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGGG 786
            P  LVK+DP +F G +P++ D    R  ++T                            SQLDDMVNSMLPPREWT+E+GTWMQYVSK+ ATRL VI LQE LDK+LLERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E +I GLE  KKELE  V ELRNKVEV EK  +ER+T++DKKRKEE+DFLKYQGQHLDSFL+Q+GGG
Sbjct:   12 PDALVKYDPALFVGFDPATNDVKATRKADAT---------------------------PSQLDDMVNSMLPPREWTQESGTWMQYVSKDSATRLDVINLQEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKVEVSEKRGNERKTLEDKKRKEEIDFLKYQGQHLDSFLRQLGGG 237          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA)

HSP 1 Score: 316 bits (809), Expect = 4.610e-106
Identity = 168/257 (65.37%), Postives = 198/257 (77.04%), Query Frame = 1
Query:   13 QFPMEVPPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 783
            Q P  VP +LV++D PIF G+EP++    N   +S+                            +QL+DM+NSMLPPREWTEETGTWMQ VSK PATRL V+TLQE LDKKL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME +IA LEE+K+ LE    ELRN+VE++EK E+E+R+V+DK+R+EEV+FLKYQGQHLDSFLKQIGG
Sbjct:    6 QHPNAVPDSLVRYDQPIFGGVEPATGHGGNGTASSS---------------------------IAQLEDMMNSMLPPREWTEETGTWMQCVSKNPATRLDVVTLQECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKREAEQRSVEDKRRREEVEFLKYQGQHLDSFLKQIGG 235          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA)

HSP 1 Score: 308 bits (790), Expect = 5.960e-103
Identity = 166/257 (64.59%), Postives = 190/257 (73.93%), Query Frame = 1
Query:   13 QFPMEVPPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 783
            Q P   P +LVKFD P+F GL+PSS        N                              SQ+DDM+NSM+PPREWT+ +GTWMQY+SKE ATRL VITLQEQLDK+L+ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME+QIA LE  KKE E    ELRNK+EVIEK E ERR +++KKRKEE+DFLKYQGQHLD+ +K +GG
Sbjct:   16 QDPANPPESLVKFDEPLFVGLQPSSHTKAAAIANIKADG----------------------ANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKREVERRGLEEKKRKEEIDFLKYQGQHLDTSIKHVGG 250          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A6V1KR45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KR45_HETAK)

HSP 1 Score: 288 bits (738), Expect = 4.250e-95
Identity = 156/259 (60.23%), Postives = 183/259 (70.66%), Query Frame = 1
Query:    7 GMQFPMEVPPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 783
            G Q P   P +L+KFD PIF GL+PS   N+N                                  +QLDDM+NSMLPPREWTEE+GTWMQY+SKEPATRL VITLQE LDK L+ERQA ETGICPVREDLY+QAFDELIRHVTLD PERGLL LR RDE+RMT+DAYKTLY SSVTFGVKKQLQAE GM+EM  QI  L E ++  E   +ELR +++  EK  +ER+ ++ + R+ E+DFLKYQGQHLD FLK +GG
Sbjct:   11 GGQGPANPPESLLKFDEPIFVGLQPS---NQNEGFKMPEAPKGELT-------------------NAQLDDMLNSMLPPREWTEESGTWMQYISKEPATRLDVITLQEHLDKCLVERQARETGICPVREDLYSQAFDELIRHVTLDSPERGLLLLRARDEVRMTVDAYKTLYGSSVTFGVKKQLQAELGMSEMANQIEALGEARRARERRCAELRARLDAAEKRAAERQQLEGQARRAEIDFLKYQGQHLDGFLKHVGG 247          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA)

HSP 1 Score: 282 bits (722), Expect = 6.890e-93
Identity = 151/254 (59.45%), Postives = 177/254 (69.69%), Query Frame = 1
Query:   31 PPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGGGSK 792
            P +L+K D P+F G + +  A K                                    QL +MVNSMLPPREWTE TGTWMQYVSK PA+R  VI +QE LD KLLERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++ ++A LE   K+LE  V ELRN VEV+EK  SE + + DKKRK+E+DFLKYQGQHLD FL+Q+G  +K
Sbjct:   10 PASLLKHDEPLFVGFDGADSAAK-----------------------------PGTAAGGQLGEMVNSMLPPREWTEPTGTWMQYVSKAPASRTDVIAMQEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVVEKRASEHKAMADKKRKDEIDFLKYQGQHLDQFLRQLGPAAK 234          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN)

HSP 1 Score: 280 bits (715), Expect = 1.910e-92
Identity = 140/187 (74.87%), Postives = 165/187 (88.24%), Query Frame = 1
Query:  220 MVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIG 780
            MVNSMLPPREWT+ +GTWMQYVSK+ ATR+ VI+LQE LDK+LL+RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E +IA LE   K+LE  V ELRN VEVIEK E+E + V+DKKRK+E+DFLKYQGQHLD+FL+Q+G
Sbjct:    1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKRENEHKAVEDKKRKDEIDFLKYQGQHLDAFLRQLG 187          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.910e-87
Identity = 139/195 (71.28%), Postives = 164/195 (84.10%), Query Frame = 1
Query:  211 LDDMVNSMLPPREWTEE-TGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGGGSK 792
            +++++NS+LPPR W +E    WMQYVSK PA+RL VI LQE LD+KL+ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME +I  L E KK+L+  V ELRNKVEVIEK  +ERR +++KKRKEE+DFLKYQGQHLD FLK +GG  K
Sbjct:   49 IEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVIEKRATERRQLEEKKRKEEIDFLKYQGQHLDQFLKTLGGPGK 243          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.150e-86
Identity = 141/254 (55.51%), Postives = 178/254 (70.08%), Query Frame = 1
Query:   31 PPTLVKFDPPIFAGLEPSSDANKNRNGNSTHXXXXXXXXXXXXXXXXXXXXXXRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGGGSK 792
            P +LVKFD PIF G         +  G  TH                      +    S+++D++N+MLP + W E+TG WM+YVS EP+TR  VI LQEQ+D KL++RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM  +E++I  L E K+E E  V EL NK+E+IEK  +ERR + +K+ KEE++FLKYQGQHLD+FLK  GG SK
Sbjct:    7 PESLVKFDAPIFTG-------ENHDGGKKTHPTS-------------------KIDPVSRIEDVLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEIIEKRSNERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGSSK 234          
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Match: A0A1V9YGG0_9STRA (Dynein light chain intermediate polypeptide n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YGG0_9STRA)

HSP 1 Score: 265 bits (677), Expect = 5.150e-86
Identity = 129/195 (66.15%), Postives = 164/195 (84.10%), Query Frame = 1
Query:  205 SQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLEENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLDSFLKQIGGGS 789
            ++++D++N+MLPP++W E+TG WM+Y S EP+TR  VI LQEQ+D KL++RQA E+GICPVRED+Y Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLY+SS+TFGV+KQLQAEQGM  +E++IA L E K+E E  V EL NK+EVIEK  SERRT+ +K+ KEE++FLKYQGQHLD+FLK  GGG+
Sbjct:   41 ARIEDVLNAMLPPQQWKEDTGYWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLYESSITFGVRKQLQAEQGMGSLEDRIAVLTEEKREFENKVLELTNKLEVIEKRSSERRTLQEKRYKEEIEFLKYQGQHLDAFLKSAGGGA 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ6_ECTSI9.800e-14487.74p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A7S2CCB2_9STRA5.850e-10767.19Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YSJ6_9STRA4.610e-10665.37p28 protein n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2UXS2_9STRA5.960e-10364.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1KR45_HETAK4.250e-9560.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2S909_9STRA6.890e-9359.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5N0_AURAN1.910e-9274.87Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1GAQ8_9STRA1.910e-8771.28Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0XVN6_9STRA1.150e-8655.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YGG0_9STRA5.150e-8666.15Dynein light chain intermediate polypeptide n=4 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:246449..251769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEJ6
PFAMsAx_dynein_light,Taxilin
Model size795
Max annot lvl2759|Eukaryota
KEGG koko:K10410
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.12e-141
EggNOG OGsKOG4001@1|root,KOG4001@2759|Eukaryota
Ec32 ortholog descriptionAxonemal dynein light chain
Ec32 orthologEc-21_004400.1
Descriptiondynein heavy chain binding
Cds size786
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.59.1prot_P-littoralis_Contig121.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 246458..251769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789520.7422144-UTR-P-littoralis_Contig121:246448..2464571680789520.7422144-UTR-P-littoralis_Contig121:246448..246457Pylaiella littoralis U1_48UTRP-littoralis_Contig121 246449..246457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789520.7551851-CDS-P-littoralis_Contig121:246457..2467751680789520.7551851-CDS-P-littoralis_Contig121:246457..246775Pylaiella littoralis U1_48CDSP-littoralis_Contig121 246458..246775 +
1680789520.7683659-CDS-P-littoralis_Contig121:249104..2491921680789520.7683659-CDS-P-littoralis_Contig121:249104..249192Pylaiella littoralis U1_48CDSP-littoralis_Contig121 249105..249192 +
1680789520.7773564-CDS-P-littoralis_Contig121:250004..2501831680789520.7773564-CDS-P-littoralis_Contig121:250004..250183Pylaiella littoralis U1_48CDSP-littoralis_Contig121 250005..250183 +
1680789520.78805-CDS-P-littoralis_Contig121:250649..2507121680789520.78805-CDS-P-littoralis_Contig121:250649..250712Pylaiella littoralis U1_48CDSP-littoralis_Contig121 250650..250712 +
1680789520.7960927-CDS-P-littoralis_Contig121:251631..2517691680789520.7960927-CDS-P-littoralis_Contig121:251631..251769Pylaiella littoralis U1_48CDSP-littoralis_Contig121 251632..251769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.59.1

>prot_P-littoralis_Contig121.59.1 ID=prot_P-littoralis_Contig121.59.1|Name=mRNA_P-littoralis_Contig121.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=262bp
MQFPMEVPPTLVKFDPPIFAGLEPSSDANKNRNGNSTHNSGNELGGGGAG
GRGNGGGRNNRQGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRL
AVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERG
LLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAGLE
ENKKELELHVSELRNKVEVIEKGESERRTVDDKKRKEEVDFLKYQGQHLD
SFLKQIGGGSK*
back to top

mRNA from alignment at P-littoralis_Contig121:246449..251769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.59.1 ID=mRNA_P-littoralis_Contig121.59.1|Name=mRNA_P-littoralis_Contig121.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5321bp|location=Sequence derived from alignment at P-littoralis_Contig121:246449..251769+ (Pylaiella littoralis U1_48)
CAGCAGGGTATGCAGTTCCCGATGGAGGTGCCGCCAACGCTGGTGAAGTT CGATCCTCCGATCTTCGCCGGGCTTGAGCCTTCCTCGGATGCCAACAAGA ATCGTAACGGCAACAGTACTCATAACAGCGGTAATGAACTGGGAGGAGGA GGAGCAGGAGGTCGAGGGAATGGCGGTGGCAGAAACAACAGGCAGGGAAA GACGTCGCAGTTGGACGACATGGTGAATTCTATGCTGCCGCCGCGAGAGT GGACGGAGGAGACGGGGACGTGGATGCAGTACGTCAGCAAGGAGCCTGCG ACGCGGTTGGCCGTCATCACGCTTCAGGTATCGTTTGTAGCATGAGACGT GTTGGGTGGAAGGGGAGGGTGAGGGAAAATAATGGAAACTGTAGGCCGAA CTAGGTTCAAGGGAGGCGCGCGATGTGCAGTGTACAACAACAGAGTGTAA ACATCTTCAAGACAGTAGACTCCAACGCTTGAGTATTACTTCTATAATAT TAATAGGTGCTCTATATACCAGGGCTTGGGAGCAGTGCAAAGTTCCCAGG ATAAAGTAATACCGGAGTACCTGATTGCGGGGGGTGCGTATTGTTACGAT TATGATACCCTACAGGCTTGAGGATTATCACGACATCGCGACTCATGGCC GGTGTGATATCATTTTTCAGTTAAAAAAATTATCACGCCGTGGTGTTGTG TCATTTTGACTCGGGGGGTGTGGTGTCTTCTGTCGCTCTTTTCACTGGCT GACACGGACTGGCCCCTTTTTCGGGATGTAAAAAAGTAGCACACGGGTGT GGTACCGTATTGTGTAACTTTTCGGAGGGTTTTCGTATTGTGTAACTTTT CGGAGGGGGTGCGGTACCTTATGAAAGTATGAGATATCTTGTGCAACCTA CGGTACCGTAAGTAGTTGTATCGAGTACTAACCATGATTTGACACAGAGG GCACAAACATGTGGTGTGTAGCCCCAATAAACAACACGTCATGATGAAAG CTCAATTAAAGTCGGCGCAGACATTCAATCTCGACACGTGTATCATACTC CGGAGCATATTTTTACGGCGCGGCAGTACTACAGAGTATTCAAAGTTGAC CTCGTTTGCTGGGTTTGACGACTGCGCTGTTGCTCATCCGCGCGTGATAT TGGTGTTGGATATATATCCAGCGTCCTCCTGGTCAGCTGCAGCGTACTAC TGTAGCTTAAAGCCAAGGCCGAGCAGTTGATTTTAGGCCTGACTGCGGCA GCAGTGGTGCGGAGTCGTTCGAACACGTTGAGACAAATGAAAATGGTGTT GTTTGCACCATCGTCAAATACAACATAGGGTATCGTGCGAAATCACCCTA TTCAACCTTTTTAGCCCACCCCCAACGCGAATTATAAGGTGACCCAGTTG GTGAGTCGTCCAAGTCTCGATGTGCATTGCCGCTGCAAACGAAATCGCCG TTCTTCCTTCATTGTGCTTAGTCCAATAGAACGTCAAGAAATCCCAAAAC TTTCGCGTTTTCAGCGGAGATGCACATCAACGCTTCTATGACTGGACAAG TCGGTCGAGACATGAGGGCTCAAAAGATTCAACAGAATGATTTCACAAAA TATTTGGTTTGTGCTTAACGGTTGTATAGTCAGGAACATATCTAATAACT CTGTACCAATATGCTACAACAACAGTGCTGTTAGATCACGGTTGGGCCTA GCTGGCTCGCTGTAGCTAGCACGCTACGGCTATTAAGAGACTATGACTCT CGTGCACTTCACACACTACTGAAACGTTTTACTCTTCAATACTTGAGCAA CGCAAAAACACTTACCACTCTGGTCCGAAATATAGCTGGGATTTGAAAAT ACCGGAATATAGGTGGGATTCTAGTTAAGCATGATGGTAACGATTTCAGC CTGTGAGACTCCGCGGCAATAATCCTACAGCCTATTCAAGATAGTCAAAA TTGAAATCCCAACCTTAACAGCGGGGATGAGTCGTTATCAGCCCCCCCCC GATTTTCCGGACTTTTGTGGTAAGGGAATATTGACATTTTCAACACGCTC GTACGGCTTCAAAAAAACTCTTTTTTTTAACCAAATTTCATTGTGTTGTC GGTAGCCCCCTGGCCTCTTGTACCCACTCTGCCTGCTTTGATTTACCACT GCCAATGTCTTCAACCGGTGGAAAAAACCAAAACCAAAATAAAGTTTCAA CTTTGCGCGCAAAAAAAAATCGAAAAAAAAAAAAAGTGGTCAAAGTTTTA GCAAAAGAAATGACGTTTCCGGGGCTCTAACCCGCGTCTCAAAATTCGAA GTCAATCCCGAGATATTTTTCCTTCCCTGAAATCCCAGCTATATCCCGGA CCAGAGTGGTATATATCACTTCGAAGTATTAACTTCAGTCTGTAACTACT CTTGCCGCTCAGATACCATACAAATACTCCTCCGATTTACCCCCCGAAAT ATCTTGTGGTACGCTCTCTTAAGATACCCCATCACCATCCATCCCATCAC CATCCAAAAAAATGTATTGATACTTCGAAGTATAAGATCTGAATTCAACA GGGCGGCTAAGTTGTAGCTGTCCAAATGATTAAGTAAGCACACCTTTATT CTCCGCTCTCTCATTGCACTTTCCAATTTGTATTACGGGTCGTTGAAAAA TCCCAGGAGCAACTGGACAAGAAACTTCTCGAGCGACAAGCGCTGGAAAC AGGGATCTGTCCTGTTCGGGAAGACCTGTACACGCAAGCGTTCGGTGAGT TCCGTTGCTTTGTAAAAGCACCCTGAAGTACAATCGAACACGATGTGCTA CTGGTGGGCTACGTCATAGACCCACGTATTTGACCGTCGTTGTGTGCTCA TCTTTACTTCACTTGGACTTCATCCCCAATCCCAACGACAACAGCAACCC TAACCCAAGCACCAGAATGCAGCAGCAGCAGCAGTAGCAGCAACAGACAA GCTCAACCTTCAACGCGCGCAATATGCAACCGAAATAATCAGCCTAAGCG CGAACACCCCGAAGAAACACAATACAATAGAAAGCATCTCGATAACATCA ATAGCGGTTTGCTCGTGTCCGATCGTAGGAACCTCCCTCTCGCCTGTGGT ACTTCCTGCGTATGTGCGACTCCGCCGAGGTATTGTATATTGTAGTGCGA CCCTGGAAGAAGTGTATCTGTTATTGGCGGTTTGCCGGAAAAAAAACGGC AAGCAGTCTGCACAAGTGCGTATTGATTCTGTTTTCCTTCTTATGGACAC AACGCCTGCACTCGCTGTTGTTTCCGGGAGCAAATGTTGACGGAAAGCTT CGGACAGCCCTTAATTTTGTTTTTCTTTGTGTCGTCTAGAAAAAACCTGT TTTTGTGACCTCAAATGCAAATGGATTAAATCTGTTTCGATATAAATTAA TCCTAAACCTCTCAGCTATGAATCCTCAAACCCTCGGTAGAGTAGCATCA GAACCAACAACGATTGTTTTTCCTCTGCGAGAATTTACTTGTTATTGACA AAAAAAACGAAAACGGCCGAGAATATATTCTTTGTCCCGTCGGCGAACCA ATGCAGACGAGCTTATTCGACACGTTACACTCGACGGCCCGGAGCGTGGG CTGCTATGTTTAAGGGTGCGGGACGAGATCAGGATGACCATCGACGCGTA CAAGACTCTGTACGACAGCAGCGTGACCTTCGGCGTCAAGAAGCAACTGC AGGCGGAGCAGGGGATGGCAGAGATGGAGGAGCAGGTGAGGCGTAAACTA AGAAATTTAGTTTCGTTGTGGTATGATATGTGGTGAAATCGAGCGACAGA GATATGGAAATCGCAGCTTTCGGGAGGGGGGGGGGTGGGCTTAAAGAGCC GGGGAAAGGGAGGAGGAAGGAAAGGCGAGCGTTCGGAATCCTTCTTTTTT TAATGCTTCAAAGGGTCCGTGAGAACATCATATCACCATATATTCGAACG CGTCTTGAAAGTTCAATCAAGGCTGAGCATAGGTGGTGATTATATGTGGG GGTTGCCAGTTTGAGAAAAGTTGCGTTCGAAATGCTGACCGACCACGTTT TTTTGTGTTATCGCCACGCTGACAACAACACGTGGTTTTCCTCTTCTCGC CGTTTCACACCCCAGGTAAAATTTTCAGCCTTAACGGCGTTCTCTGAAGA CTCTGAAGGCTTCTTGCATTTTCCCCGCTTTGTTTTTTGCTGTGCTGTCA GATCGCTGGGTTGGAGGAGAACAAGAAAGAACTTGAGCTGCACGTGTCGG AATTACGAAATAAGGTAACATCAAACCGGCATCATCAACGGAAGAGTTTG GGGTGTGTAGGGTACGGCGTCGAGGGGGCATCGATCGCCGAGGTTTCTTT CATCTAGAAACAAACCTGACCTTACATATTGGAAAAAATACGTCCCATTG ACGTTTCGCGTGTGATATGATATGATATGATATTCTATGATATGTCTTAC AAACTGGCAACCAATGAATGACAAAACTCGCTGCAGTTCGATTTGAGCGG AGACAAAGGACCAGGCATCCTCCCAACGCACACCAACTAAGCTTCGATCC ATCCTTGGGGTACGGCATAGAGATTAGGGTTAGGGTTGGGTCGGTCCGTG GCTCTGGTTAATAAGGCGAAGGGGCGCCGCGCAGTATTCAGAGAGAACGA GGAAGGTAACGCTGGAGATTTTACAGCGTGTCCCCTGCTTTTTTCGTTCC CAAGTGGGAAACGATACACGCGCGCCCTAACATTGGATATACCGGGGACA GCTCCCGTCCCGAATGTGGACTTGATTGGTTATCCTCTCGCCTGCAAAGG TTGCGACGCCGTGGAGCGGAAGGGGCTTCGCCTACTCGGTTCGAGCAACA CCACTCCGCGAGCCAACCCTGCAGAATTACCTCTCAACCCAAATGAACCC CAAGCCTTTTTCCCTCCCTTTATTATTTTTGCTGTTGGCACTCCCACCTT CCTTTACAGGTATACACGATAATCGCCGCAGCAGACACTCGCATTACCTA CCTTGCTGTAGTGCGTCTCTACTGAAAAAAAAAGGGGCAACCATCTCAAT GCGGCGGCACAGCCAGCCGGTGTATCGGGCCTGTGCTCCATCGTTGTGCC GACCAAATGCACCCGAGTATGCGCTCACATATGATACATCCGCTTGCGTT TGCCTACCGGTCTGGTCTGAAAACATTCATCAGGTAGAGGTGATCGAGAA AGGGGAGAGCGAGCGGCGAACGGTTGACGACAAGAAACGAAAGGAGGAGG TGGACTTCCTCAAGTACCAGGGGCAGCACCTCGACTCATTCCTAAAGCAG ATCGGCGGGGGGAGCAAATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig121:246449..251769+

>mRNA_P-littoralis_Contig121.59.1 ID=mRNA_P-littoralis_Contig121.59.1|Name=mRNA_P-littoralis_Contig121.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig121:246449..251769+ (Pylaiella littoralis U1_48)
ATGCAGTTCCCGATGGAGGTGCCGCCAACGCTGGTGAAGTTCGATCCTCC
GATCTTCGCCGGGCTTGAGCCTTCCTCGGATGCCAACAAGAATCGTAACG
GCAACAGTACTCATAACAGCGGTAATGAACTGGGAGGAGGAGGAGCAGGA
GGTCGAGGGAATGGCGGTGGCAGAAACAACAGGCAGGGAAAGACGTCGCA
GTTGGACGACATGGTGAATTCTATGCTGCCGCCGCGAGAGTGGACGGAGG
AGACGGGGACGTGGATGCAGTACGTCAGCAAGGAGCCTGCGACGCGGTTG
GCCGTCATCACGCTTCAGGAGCAACTGGACAAGAAACTTCTCGAGCGACA
AGCGCTGGAAACAGGGATCTGTCCTGTTCGGGAAGACCTGTACACGCAAG
CGTTCGACGAGCTTATTCGACACGTTACACTCGACGGCCCGGAGCGTGGG
CTGCTATGTTTAAGGGTGCGGGACGAGATCAGGATGACCATCGACGCGTA
CAAGACTCTGTACGACAGCAGCGTGACCTTCGGCGTCAAGAAGCAACTGC
AGGCGGAGCAGGGGATGGCAGAGATGGAGGAGCAGATCGCTGGGTTGGAG
GAGAACAAGAAAGAACTTGAGCTGCACGTGTCGGAATTACGAAATAAGGT
AGAGGTGATCGAGAAAGGGGAGAGCGAGCGGCGAACGGTTGACGACAAGA
AACGAAAGGAGGAGGTGGACTTCCTCAAGTACCAGGGGCAGCACCTCGAC
TCATTCCTAAAGCAGATCGGCGGGGGGAGCAAATAA
back to top