|
|
Homology
BLAST of mRNA_P-littoralis_Contig121.17.1 vs. uniprot
Match: A0A6H5JJ81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ81_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 8.830e-10 Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 94 KMAMTPLFSLAAATLLALGGDAFVVLPPASQSGSRGGSLDTSTCKPLQAAAPSADTIQERKDARAALLDSGGLDKLMGMLEKLRKDSGAESGEYEGGEDAAP 399
K MT LFSLAAA LL G +AFVV+P A+ G RGG++ + A+P+A+ +Q+R+DARAALL+SGG+D+L+ + +R + E E G AAP
Sbjct: 2 KTTMTSLFSLAAAALLPWGHNAFVVVPAATSFGGRGGTVARLDSRIR--ASPTAEALQQREDARAALLESGGVDELLRKIAIMRGE------ESEEGASAAP 95
BLAST of mRNA_P-littoralis_Contig121.17.1 vs. uniprot
Match: D7FWQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ9_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 2.840e-9 Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 103 MTPLFSLAAATLLALGGDAFVVLPPASQSGSRGGSLDTSTCKPLQAAAPSADTIQERKDARAALLDSGGLDKLMGMLEKLR 345
MTPLFSLAAA LL G +AFV++P A+ G RGG++ + A P+A+ +Q+R+DARAALL+SGG+D+L+ + +R
Sbjct: 1 MTPLFSLAAAALLPWGHNAFVIVPAATSLGGRGGNVARPESRIR--ANPTAEALQQREDARAALLESGGVDELLRKIAIMR 79
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2573 |
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_004210.1 |
| Cds size | 585 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789519.5513718-UTR-P-littoralis_Contig121:82596..82692 | 1680789519.5513718-UTR-P-littoralis_Contig121:82596..82692 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig121 82597..82692 + |
| 1680789519.5989559-UTR-P-littoralis_Contig121:88537..90429 | 1680789519.5989559-UTR-P-littoralis_Contig121:88537..90429 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig121 88538..90429 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789519.5621507-CDS-P-littoralis_Contig121:82692..83040 | 1680789519.5621507-CDS-P-littoralis_Contig121:82692..83040 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig121 82693..83040 + |
| 1680789519.5785913-CDS-P-littoralis_Contig121:88300..88537 | 1680789519.5785913-CDS-P-littoralis_Contig121:88300..88537 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig121 88301..88537 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig121.17.1 >prot_P-littoralis_Contig121.17.1 ID=prot_P-littoralis_Contig121.17.1|Name=mRNA_P-littoralis_Contig121.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MAMTPLFSLAAATLLALGGDAFVVLPPASQSGSRGGSLDTSTCKPLQAAA PSADTIQERKDARAALLDSGGLDKLMGMLEKLRKDSGAESGEYEGGEDAA PGPVAAAPAAAAPARKEEAAPVKAAAASPVEAAAPAAEAVAPAPVKAAAA APVETAAAAPVEAAAAAPVEEAAPAPPQPKKEKKQRRKKNKKKA* back to topmRNA from alignment at P-littoralis_Contig121:82597..90429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig121.17.1 ID=mRNA_P-littoralis_Contig121.17.1|Name=mRNA_P-littoralis_Contig121.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7833bp|location=Sequence derived from alignment at P-littoralis_Contig121:82597..90429+ (Pylaiella littoralis U1_48) AGGATCGTGGTTCAAATCTCAAATCCGCAGCCATCATGGCGGGCCTGTGG
TGCATACGATACACAAAAAGATCTTCGAGACCATAAAAACACAAAGATGG
CGATGACCCCACTCTTCTCCCTGGCCGCTGCTACTCTCCTCGCCTTGGGC
GGGGATGCGTTCGTGGTTCTGCCTCCGGCATCACAGAGTGGGTCCCGGGG
GGGGAGCCTCGACACGTCGACATGCAAACCTCTCCAGGCCGCCGCCCCGT
CCGCCGACACAATACAGGAGAGGAAGGACGCGAGGGCGGCTCTATTGGAT
TCGGGCGGGCTGGACAAGCTCATGGGTATGCTCGAGAAGCTGAGGAAAGA
CTCGGGTGCCGAGAGCGGTGAATACGAAGGGGGTGAAGATGCTGCTCCTG
GTCCGGTTGCTGCTGCGCCTGCTGCTGCTGCGCCAGCAAGGAAGGTATTT
ATCCGCGTTTGTGAACTCCACAACCTTCAACGGGAGTCCGCGGTTGCCTC
GTGCTATCATACGTAGGGGAAGATGGACATAAGGTTACGGAGGGAATGCT
TTTCTACTCGAACGATTTCAAAGATGCTACACTCCATCTTGCTTTGCGCT
GAAGTGCAGATGGGGCCATCAGAGGAATTTGGGGCCGGGGCCATCTGCCC
TCTGTTTTTTTTTCGCCCACGCACGCATCATCTCCATCGTTTTTTACTGC
TGTATGACTTACTACGGTGCAGAGGTGCTGTTGCTACATGAGGCATGCTC
GTACTCGTACAAAAGTCCGTTGGGTGATACGCATCATAGGGTCCAATGTA
TGTACCTTTAGTCCCTCTCCGCGGAACTGTTTTTTTTTCTCGTGAAATCG
CCCGACGATGCGATATGAAGGCGTTCTTCCCCCGACCGGAGCCAGAAAAT
CAGCATGCGAGAAAAAATCGCGAATGATACATCTAGTACTCGTACATGTG
TTGCCATCCCGTATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAAC
TACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAGTTACCCCCACTT
CCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGATCCGCG
GTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTCTTTTTATTAACAGCAT
AGCCGCCTTCGAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCC
GCTCCTCCGCATCTAGCGGGTAACGAGGGGACCACTATTCCACCGGGGCG
ACCGGTTTTAATATTACTTCGTGAATGCTCCGTACGTACAAGTATTCGAT
TTCTCTCTGACCGTTTCCTTTCCCAAATACGTACCCCAACACGTACCAAA
TCCGCCCGAGCGCAGCAATAGCAGTGCCGACAGAAAAAGAAAGAACAGGG
TACTGCTGTACCCGAGAATATCACTCTCAGGCGAGTGAGTTCACCCCCTG
ATCTGCACATTCTGCGAATCCAGCAGGTATGGCGAAAGCTTGGCGAAAAA
ACTGCAGCAGTAGAGATGAAGAAGGAAATCAGAATACTTTATTTCCCCGC
TAGTCTGCCCCTTATTTTGTTGCTTCATCTACACACAACCTGCTGCCAAA
ACCCGTTCTTACGCCAGCGCACAAGCTGTGACAGCCGCTTAGCGGCAGCG
GCAGCGGCGTCGACGGCCGAACATCATGAAGGCCTCCATTCCGAAAGAAC
TAAGAGGTTGGAGGCCTTGCGGCTCTGATGATTTCTGATGCCGTGTTTCG
AACTGCGTGACTGCAACCAACCAATTTACACCACCACCAGCGCGATTTGG
AAGCGCCTCACGGCACCCACTGATCTTGCGATCCTCGTTTAGCCTCACAC
GAGCTACGACAACCGCGTAGCGGCAGCCGAGGACCATGATTATATAAACC
TCCGTTTCAAAAGAATCAGCACTATCGGGAAGTCGTCAATCTCTGTTTGC
TGTTACGTAGCTGTTGTGTGAAATGTGTTTTTGTGATTTTACCAGGATTG
TATGATACAACGAAAAAGTACACATTGAAACGGAGAGATTCTGTAATTCG
AAGCACAGAACGATATGCATATGCCCTGATAAGGGTGAGATAGCCCGCAG
TCCGGGCACAACAGTTGGATATGGATAGACGGTGTTGGTGGACAATACTG
AGGTCTGGATGCGCATAAAAAAGGTACACCAACTGGTGGTTTTCTATACT
GCATGGTACAATACGTAGTAGTACTCAAGCTCACGATTTCGCCGTCGGTT
GCGCGTTTCGCTTCGCCCGTCCCCCATTTGACTATGACAATCCTCATGGC
CACCACCATCCCTCTGTAAAGGTTGGCATTTGACCTGTCGGAGAGGTCGG
TAACGATGGTCTTCGCAACCGAACTGGTCGCAAGTCATTTGACCTGTCGG
AGAGGTCGGTAACGATGGTCTTCGCAACCGAACTGGTCGTAAGTTAGCTA
AGACCATCGTTAGCGACCTCTCCGACAGGTCAAATGTCAACCTTTACAGA
GGGATGGTGGTGGCCATGAGGATTTGTCATAGTCAAATGGGGGACGGGCG
AAGCGAAACGCGCAACCGACGGCGAAATCGTGAGCTTGAGTACTACTAAG
TATTGTACCATGACCGATGATCAGGAGGTTTGGGTCCTGGTTGCCGGCCG
AATGCCCGAAAATCCGCCAAGAAGAGGTTCGATGTATACCCCATCCTGTA
CCCCATCCTGACCGATTATCCTGGTTGACGACCGAATGCCCGAAAATTGG
GTCGTGGTTGCCGGCCGAATGCCCGAAAATCCGCCGTTTGGGTCGTGCTT
GCCCGCCGAATGCCCGAAAACGTTTAAGCACTCCGGGAACCCCGCCGATT
ATTATACGGAAATTCTGCTAAACGACAGGACTATTTTTGGTACGATTTGT
ACACGGATTTGTGTTACTGTCCCCCACGAACCAATCGTCGTGCCAGCTCT
AACCACAAAAGTGGTGCTTGAAAAAACGGTTGTAATAAGATGTAGGAAAC
AAAGGTCTCTTGAGCCAGTCATACAACTTGCATGATACAAGGTACCTGGG
ACAAGTTTTGCGTTCCATGAAACAACGAACAAGAAATTTTTGAAGATTTC
TTTGATAACGGGACAGCATGTATCAACTTGTACTTCGTTTTCACGTAGGG
CAACGGCCGAAAGAGGGTGTACCCTGCTGTGCCCGTTGTTTCGGCCAAAA
CACTGCTGCTATTGTATTTTTAATACGTTGTGCAACGAGCACCAGGCGCG
GCCGTGACCTCACGCGGCCGAGCAGCGTCCTGAAGTCCATTCAACAGAGC
ACTATCATACAGCAGGATGTATTTCCATTCTTGAGCAAATACATCTCATA
CGCGAGGAGTGAATCCCTTGCACAGCAACCTATGTACTCCTTTGTAGTAG
TATGGGCTACATAATATCCTTTGGGCAGCGACCTCCTTCGTTGTCCAACA
GCTGTCGTGGTAGCAGGGGTTTGGCATGCAAGACAAGATAGCCACCCAGA
CTCCTCTCGCTTTACTTAAACTTGGCAACTGGGCAGGTGTTCGAGGTCAA
GTTAAGGCCACGCTTTATAGGTTTAGTGCAAAAAAAGGGGGGGTCGGAAA
GGAACAGCGTTTCGCAAAAAATAAGTCATACGGAGTATGTCAAACATGGA
GTCAGGGGTTTGTACAATGCGGGTCAGGGCGCAAAAAAATAATTGAAAGT
CGGACATGGACTCAGGGGTTTATGCAATGCAGGTTTAGTCCGGGGGGGCC
AAAAAGTCACGATCAAAAACCTCTTCCAGGGAGCCTCGTTTGGGCGGTAG
ATCGAGATTTATTTTACGGCAGCCGTTCCAGCCTCCCATTCTTAGTACGT
CGAACATTCGTCCGGCAAACCAGCTACATTCGCGTCGAATCCGATCGTTC
GTCGGAGATACACACTCGGAGGACGGCGGCATCGCGCAAATTCTCCCAGC
AGATGCCCCTTTTGGTGCAATTTCGGGCTGCTGCATGCACACAGATAGAG
CAGTTCACAACCAAACCTCTGGAATATTTTCTGGCTGCCTGCTGCTGCTG
TTAAGGTATGGGACGCCACTCACACCATCACGTCAGAAGGCTCTGGAAAG
TTTGAGCAGTGTAGTTAGTTGCCTGTGCCGAGCTTGCTCTGTCGGCAACT
GAACCGCGATTTCTGCGGCGTTTTCACCGAAAATCCCGTGACGGGAATGT
TCAGTCGTTGTCGTCGGTTGTCTTGTCACCCAAGTCCTCTCTGCCTCTAC
GTACTTCCAATGATGTGCTCATCCAAAAGACAAGAGTAACAAGTCTCGTC
GCGCGAAAGGTATTGTCATGTCCTTCCGAGGAGTTTCCCTTCGGCTGGAG
GTACCACCGACGTATCCCGCCGACACGCATCCAAAATCTATTCTGTGATG
CCACGCGCCTAGCAGGGGAGACTCTTAGCAGCAGTACGCACTACAGAGAG
GGCAATAGCCGCGCACGAAGGACTGAACCGCACCAACACCCGATAAAAGA
CATGAAACCCTCCCTCCCTCCCTCCGGGTAGAACGAAGTGAAGGTACCGA
TTCCCCTGGCATGCTATTTTTTTTCCTTTTCTGGCCTTTGCCTTTTATAC
TCGTACCAGCCGTGATGCCGCCCAAGCATGTGATATCACTATTTTCCCAC
GCGCCAACTCCAGCGAGGGAAACTGGTGCATGGATGTGCGGAACGCATCT
AGCCGAATGTTTTCCGCTTCGGCTTTTTTCCTGCAAGGTGTCTCACGAGT
GCCGGCAGGCAACACGCTTAAGACTCGCTATATATTTTTGCTATGAATAT
AAAATCTACAGCAGTAGGTTATAGCATGCTTCATATCGTAGGGGTGATGC
GCGAGGTTCCGAATTTTTTCTTGCGTTGCCCCGACGCCATTTGCTGCCGC
AACTTACACACACGACTCACACATGCATGAATATTGTTCAACTAGTGCCT
TCGAGAAGCCCGGTAGAAAGTTTGTCCGCAAACGTACCTGAACTAGCGTT
TGGCAGCTGGCGTGTACTGTACAGAGCTAACAGTTTTATTGTTCTTGATT
TTTCACTGCTGCCATGCCTATGAGTTGCTGCACGTTAACCAACAGCAGCT
GTTCATTTCTTGTTGTTTCACGACTGCAAGAACACAGAAGGCCCTGTAAA
AGACTGCAAAGCTGTTGTCGCGTAGTTCGCGAAAGGGGTTTGCTGCCTCT
GTGGTCTGATGCTCATGTTTTGCCGGCATGGATATCATATTTGGAACATG
AACACCTGGATTTCGGAGTGTTCAACCGAGCTTTGATCGGGCTCATAGAA
CGACAGTCTGCCCAAAACATGACCAATCGAGCGAGAAAAGCGCGACCGGC
CAGCTGCCCTCGAAGGGGAAGGAATACCTGACAGCAGTCCAGGGCCACAC
CAAAGTGAATGCATCTTGTTTTGGTCTACTTTGATGGCTTTCGAGAAGGC
ATTCGAATGCATCTCGTTTTCAAACTTATCGAACACCCCAACGCGCGTAG
CACTCGGTCCGACTCTTGTTGCGTTGGTGAGCGAAAAATCCAAACGTGCT
CCTCTCCATCCCTGCTCAACAGGGGTTCGAGCGTCGTGGGTACGCTGAAT
TATTGACCCCCCGTCCTCCCCCGTCTGTCGGTGTCGTGCCGCTCGTCACG
TCCGTCCATCATCCACATGCTGGTTGCCCGTTGATGCGGGGTAATCATGC
GCAGGAAGAAGCGGCTCCCGTGAAGGCGGCAGCGGCGTCTCCGGTTGAGG
CGGCAGCACCGGCTGCTGAGGCGGTAGCACCGGCTCCCGTGAAGGCGGCC
GCAGCGGCTCCAGTTGAGACGGCGGCAGCGGCTCCTGTCGAGGCGGCGGC
AGCGGCTCCTGTCGAGGAGGCAGCGCCGGCACCGCCGCAGCCAAAGAAGG
AGAAGAAGCAGAGGAGGAAGAAGAACAAGAAGAAGGCTTGAGCCCAGGAA
TGCCGAGCTATGTTGCGCCAAAAGGGGCCGGTCGCATGCAAGGAAGAGAC
TGAAAGCCCGACCTTGTGTCTTGGTCCCAGAAGCACGTCTGGAGTCGAGA
AAGCCTTGAGTAGATATTGAAGATTTTTTGCACTTTGCTGGACCCCCCCC
CTCCCCGCCGTTTCCTGTAATTTTTCCTACACATCCTTCCAATTTTCCTT
TAAATAAATACTAGGCTGAAAGTAGTTATCGAAGAAAAAATGGCTCAAGT
TTTCTCCTGGGGTTACTGCTGTTGAACAATGTTGGATGTATTTAGATTAG
AATTGGAATTGGAGTTGAACTTTTAATAAACGTAGTTCGAGGGAAAGTCA
CGTGTTTATTTGTGCTGTACATTTTTAGAGAAGACAGGCAAAAGCAAACG
TTATCAGAAGGGTAGAAACAAACGCATGTGTGTGAGAGTGGGCTGGCCTC
CCGCTGCTGCGCGAGGAGCGTGCCGCGCGTGTCGTAATTTTGTTGTGACC
TTTCGGTTTGTCTTTCCTTGAAAGCCGGAAGCCCAACTACAAAGTACTTT
TTAAATATGGGATCACCCTTTCTAACTTCTTGAATGGGGGGCAGCGGCGT
ATGAGATTGAGGGAACCACTAACTGATGTGCGTTTACATGGCACGGAGAT
TTGTTGCGGTGCAGACTCGCGGCAGCATCGATCGCCTCGAGTGGGCATCT
GTTGTCTCTCGCCTGTTTTAGTTTGGGCCTTTCCGGCCGTCATAAGCGAA
GGCTGCATTTTTTCTGAGTGGGTGTAGGCCGTGGGTTGTCAGCCCATCTA
CTGCTGTGAGCGCCATTATGGACCTCCCGGTGTAAGTTACGTGCACCAGC
CGAGGGGTCAGACAGAGGTCATGAAGTGAAATGTTTTGTAAAGAAGGGGC
ACGTTGTAAGACGAAGAGAAATCCAACGTGGGCGGACACGAAGCGTCTCT
ATGTGCTAAGGTAGCGCGGAAGGCTTTGGTTTGGGTCCAAAAGTTAAAGC
TACGAAATTATTGGTAGACGGGTGCTTTTCGCGTGGTTGGCCCATCTGGG
GGGGGTTGGACGAAAGCAAGGGTCGCAAATCTTGTCGCGGCATACTCGTA
CCATTCTTTTTGTTGCATTGGTGTTGCAGTTAGGATTCGGGCACGTGTTA
TACTTGCGTGCGTTTGACGAAGCTTGTAGTGTGTGTCCAAGGTACTGACT
GGAAATTCTCACCATTTGCTGGGCATTTATTGCAGCAGGATGGACAGGGA
TGCTTATGCTTGCACGGAAAACCCAACTCCGGGATTTCTCCTGTGCCTGC
CTCCCTTGCTGCCGTTGCCGTAACCATTAGTTCAGCATGATGAAATGTTG
ATTGTGTAGTCAATTTCTGCAGTGTCGCGGCTGCGCTCACAACGCCTCCA
CTAGCAAAAACAAGCACGGTATGTTTCCGTTGATGGACGCTTGTCGTGAG
TGCTCCAGACGATGCGGCGAAAATCGCATCCAGTACCCCTGAAATCTCCC
ATGATCCTTGTCGGGACACGATAGGCAGGTACGGTGTCGATCGGTGGGGT
CCCTCAGCACCCTTTTCGCTGCATGACTAAAAAAAAATGCAGATAAGCTG
GCTTTGCCACGCCTCGGCATGAAATCTGCATTTTTTGTGTTCACGAGAAA
GAGTATAATAAGCTCCCAACCACACCCTGGTAGAACTTGGTGTCGACCTC
ATCATGGAGGTTCATTTTTTGTTACGGCTCTCGACTCGCCTGTCCAGGAG
TCGCCACCATTCTTGATTCATGATTTTTGTCTCTCCAGAACGTTCGAACC
ATGTGCGGTTTTCTCTTGTGTCGTATCGCTGTTTGATTTACGCCTCCTAT
TTCTGTTGTCTAATACTGGAGGCACCTGACTTG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig121:82597..90429+ >mRNA_P-littoralis_Contig121.17.1 ID=mRNA_P-littoralis_Contig121.17.1|Name=mRNA_P-littoralis_Contig121.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig121:82597..90429+ (Pylaiella littoralis U1_48) ATGGCGATGACCCCACTCTTCTCCCTGGCCGCTGCTACTCTCCTCGCCTT GGGCGGGGATGCGTTCGTGGTTCTGCCTCCGGCATCACAGAGTGGGTCCC GGGGGGGGAGCCTCGACACGTCGACATGCAAACCTCTCCAGGCCGCCGCC CCGTCCGCCGACACAATACAGGAGAGGAAGGACGCGAGGGCGGCTCTATT GGATTCGGGCGGGCTGGACAAGCTCATGGGTATGCTCGAGAAGCTGAGGA AAGACTCGGGTGCCGAGAGCGGTGAATACGAAGGGGGTGAAGATGCTGCT CCTGGTCCGGTTGCTGCTGCGCCTGCTGCTGCTGCGCCAGCAAGGAAGGA AGAAGCGGCTCCCGTGAAGGCGGCAGCGGCGTCTCCGGTTGAGGCGGCAG CACCGGCTGCTGAGGCGGTAGCACCGGCTCCCGTGAAGGCGGCCGCAGCG GCTCCAGTTGAGACGGCGGCAGCGGCTCCTGTCGAGGCGGCGGCAGCGGC TCCTGTCGAGGAGGCAGCGCCGGCACCGCCGCAGCCAAAGAAGGAGAAGA AGCAGAGGAGGAAGAAGAACAAGAAGAAGGCTTGA back to top
|