mRNA_P-littoralis_Contig121.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.13.1
Unique NamemRNA_P-littoralis_Contig121.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:57372..57819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size448
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789518.8774827-UTR-P-littoralis_Contig121:57371..573891680789518.8774827-UTR-P-littoralis_Contig121:57371..57389Pylaiella littoralis U1_48UTRP-littoralis_Contig121 57372..57389 -
1680789518.8998606-UTR-P-littoralis_Contig121:57689..578191680789518.8998606-UTR-P-littoralis_Contig121:57689..57819Pylaiella littoralis U1_48UTRP-littoralis_Contig121 57690..57819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789518.8881016-CDS-P-littoralis_Contig121:57389..576891680789518.8881016-CDS-P-littoralis_Contig121:57389..57689Pylaiella littoralis U1_48CDSP-littoralis_Contig121 57390..57689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.13.1prot_P-littoralis_Contig121.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 57390..57689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.13.1

>prot_P-littoralis_Contig121.13.1 ID=prot_P-littoralis_Contig121.13.1|Name=mRNA_P-littoralis_Contig121.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MTDVYEQPVQSEVDAGNGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQR
GGVVESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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mRNA from alignment at P-littoralis_Contig121:57372..57819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.13.1 ID=mRNA_P-littoralis_Contig121.13.1|Name=mRNA_P-littoralis_Contig121.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=448bp|location=Sequence derived from alignment at P-littoralis_Contig121:57372..57819- (Pylaiella littoralis U1_48)
AGGACATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCACGGTGCGA
GAAACACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCTCGACAGGC
CCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTGTATGAGCA
ACCAGTTCAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGAAGAGG
ATGATGATGCTAGTAGTGATGATGGCGATGACGGTTGGAACAGCTGTGTT
TTGCGGCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTGGAGTCCAT
GGACCCATCGGAGAGAGGTTTTGGCGGTTTAGGGGGCGGCGACGGTGACC
CCAATGCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATCGGGGCAAG
AGTTCGCATTTGCGGCGGTTTGTATGGTGATGAACTTCATGCTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:57372..57819-

>mRNA_P-littoralis_Contig121.13.1 ID=mRNA_P-littoralis_Contig121.13.1|Name=mRNA_P-littoralis_Contig121.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig121:57372..57819- (Pylaiella littoralis U1_48)
ATGACAGATGTGTATGAGCAACCAGTTCAGTCGGAGGTGGATGCAGGGAA
CGGCAGCAGTGGCGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATG
ACGGTTGGAACAGCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGC
GGCGGCGTGGTGGAGTCCATGGACCCATCGGAGAGAGGTTTTGGCGGTTT
AGGGGGCGGCGACGGTGACCCCAATGCTGGGACGTTTTCGCAGCTCATGC
ACCCGTTTGATCGGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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