mRNA_P-littoralis_Contig121.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig121.111.1
Unique Name	mRNA_P-littoralis_Contig121.111.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KXV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.290e-13
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + V+  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     VTR+ AKR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:   86 LARTAGGPSRVTTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGTGGRRRQGQREFVATPAVTRSRAKRDGPGPGIFALLATEDEIKRSIAELPAPG 181

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.640e-12
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     VTR+ AKR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  210 LARMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGTGGRRRQGQREFVATPAVTRSRAKRDGPGPGIFALLATEDEIKRSIAELPAPG 305

[Close]

BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.650e-12
Identity = 44/98 (44.90%), Postives = 56/98 (57.14%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     VTR+ AKR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  197 LARMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGTGGRRRQGQREFVATPAVTRSRAKRDGPGPGIFALLATEDEIKRSIAELPAPG 292

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KYV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.270e-12
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +A+  GG + VS  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     VTR+ AKR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  302 LAQMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGTGGRRRQGQREFVATPAVTRSRAKRDGPGPGIFALLATEDEIKRSIAELPAPG 397

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.760e-12
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     VTR+ A+R G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  410 LARMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGTGRRRRQGKREFVATPAVTRSRAERDGPGPGIFALLATEDEIKRSIAELPAPG 505

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KW79_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW79_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.190e-12
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGAGSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EMVH G G  R   + E+     VTR+ AKR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  123 LARMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHEGGG--RLQEQREFVATPAVTRSRAKRDGPGPGIFALLATEDEIKRSIAELPAPG 215

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5K6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.320e-12
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGAGSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR   G + VS  A P   PAP   AA P      W E+VH G    R  G+ E+     VTR+ AKR G  PG FAL+A++D+I+RS+A    PG
Sbjct:  342 LARMAEGPSRVSTPAAPVATPAPAHSAAPPLASDGLWTELVHEGGTGGRRQGQREFVATPAVTRSRAKRDGSGPGIFALLATEDEIKRSIAELSAPG 438

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.230e-11
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA        W EM H G  G  R  G+ E+     VTR+ A+R G  PG F+L+A++D+I+RS+A  P PG
Sbjct: 1139 LARMAGGPSRVSTSAAPVATPAPAHSAAM--ASDGPWTEMAHEGGTGGRRRQGQREFVATPAVTRSRARRDGPGPGIFSLLATEDEIKRSIAELPAPG 1234

[Close]

BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.950e-11
Identity = 42/98 (42.86%), Postives = 54/98 (55.10%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EMVH G  G  R  G+ E+     V R+  KR G  PG FAL+A++D+I+RS+A  P PG
Sbjct:  449 LARMAGGPSRVSTSAAPVATPAPAHSAAMASDGL--WTEMVHGGGTGGRRRQGQREFVATPAVMRSREKRDGPGPGIFALLATEDEIKRSIAELPAPG 544

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BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-8
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 1

Query:   70 IARAVGGDATVSVGALPATLPAPPRPAATPPTPIEDWGEMVHTGA-GSDRAHGREEYRVISRVTRAGAKRSGMTPGAFALMASQDDIERSLATEPLPG 360
            +AR  GG + VS  A P   PAP   AA     +  W EM+H G  G  R  G+ E+     VTR+G       PG FAL+A++D+I+RS+A  P PG
Sbjct:  453 LARMAGGPSRVSTSAAPVATPAPAHSAAMAADGL--WTEMMHEGGTGGRRRQGQREFVATPAVTRSG-------PGIFALLATEDEIKRSIAELPAPG 541

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig121.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5KXV3_9PHAE	4.290e-13	43.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0K7_9PHAE	1.640e-12	44.90	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KGK7_9PHAE	1.650e-12	44.90	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KYV5_9PHAE	5.270e-12	43.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K793_9PHAE	5.760e-12	43.88	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KW79_9PHAE	6.190e-12	44.33	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6C0_9PHAE	7.320e-12	42.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KBJ6_9PHAE	5.230e-11	41.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAQ1_9PHAE	6.950e-11	42.86	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JMP2_9PHAE	1.000e-8	40.82	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig121	contig	P-littoralis_Contig121:495507..495869 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	365
Hectar predicted targeting category	other localisation
Exons	1
Cds size	363

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789522.7600985-CDS-P-littoralis_Contig121:495506..495869	1680789522.7600985-CDS-P-littoralis_Contig121:495506..495869	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig121 495507..495869 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig121.111.1	prot_P-littoralis_Contig121.111.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig121 495507..495869 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig121:495507..495869+
coding sequence from alignment at P-littoralis_Contig121:495507..495869+

protein sequence of mRNA_P-littoralis_Contig121.111.1

>prot_P-littoralis_Contig121.111.1 ID=prot_P-littoralis_Contig121.111.1|Name=mRNA_P-littoralis_Contig121.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
AAATTAATAEWADFMKDHGGGVRIARAVGGDATVSVGALPATLPAPPRPA
ATPPTPIEDWGEMVHTGAGSDRAHGREEYRVISRVTRAGAKRSGMTPGAF
ALMASQDDIERSLATEPLPGT

mRNA from alignment at P-littoralis_Contig121:495507..495869+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig121.111.1 ID=mRNA_P-littoralis_Contig121.111.1|Name=mRNA_P-littoralis_Contig121.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig121:495507..495869+ (Pylaiella littoralis U1_48)
GCAGCGGCAACAACGGCGGCGACGGCGGAGTGGGCAGATTTCATGAAGGA
CCACGGCGGCGGCGTGCGGATTGCGCGGGCGGTGGGAGGTGATGCAACGG
TGAGTGTCGGCGCGTTGCCTGCTACTCTACCTGCCCCTCCCCGCCCTGCG
GCCACGCCGCCAACGCCGATTGAGGATTGGGGCGAGATGGTTCATACCGG
AGCTGGCAGCGATCGGGCGCACGGGCGCGAGGAGTACCGGGTGATTTCCA
GGGTGACAAGGGCGGGCGCGAAGCGGAGCGGGATGACGCCGGGGGCTTTT
GCACTGATGGCGTCGCAGGATGATATCGAGCGGTCTCTCGCCACCGAGCC
TCTGCCGGGCACC

Coding sequence (CDS) from alignment at P-littoralis_Contig121:495507..495869+

>mRNA_P-littoralis_Contig121.111.1 ID=mRNA_P-littoralis_Contig121.111.1|Name=mRNA_P-littoralis_Contig121.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig121:495507..495869+ (Pylaiella littoralis U1_48)
GCAGCGGCAACAACGGCGGCGACGGCGGAGTGGGCAGATTTCATGAAGGA
CCACGGCGGCGGCGTGCGGATTGCGCGGGCGGTGGGAGGTGATGCAACGG
TGAGTGTCGGCGCGTTGCCTGCTACTCTACCTGCCCCTCCCCGCCCTGCG
GCCACGCCGCCAACGCCGATTGAGGATTGGGGCGAGATGGTTCATACCGG
AGCTGGCAGCGATCGGGCGCACGGGCGCGAGGAGTACCGGGTGATTTCCA
GGGTGACAAGGGCGGGCGCGAAGCGGAGCGGGATGACGCCGGGGGCTTTT
GCACTGATGGCGTCGCAGGATGATATCGAGCGGTCTCTCGCCACCGAGCC
TCTGCCGGGCACC