mRNA_P-littoralis_Contig1209.28.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1209.28.2
Unique NamemRNA_P-littoralis_Contig1209.28.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1209.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1209contigP-littoralis_Contig1209:34842..35324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size188
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.7887228-CDS-P-littoralis_Contig1209:34843..349471680789517.7887228-CDS-P-littoralis_Contig1209:34843..34947Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 34844..34947 -
1680789517.7986758-CDS-P-littoralis_Contig1209:35242..353241680789517.7986758-CDS-P-littoralis_Contig1209:35242..35324Pylaiella littoralis U1_48CDSP-littoralis_Contig1209 35243..35324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1209.28.2prot_P-littoralis_Contig1209.28.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1209 34844..35324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1209.28.2

>prot_P-littoralis_Contig1209.28.2 ID=prot_P-littoralis_Contig1209.28.2|Name=mRNA_P-littoralis_Contig1209.28.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
PLRVFFLSGRHQQLPFCLPRLLLGVPKDVNIMEAAAGEMDDRNGWTLRDS
SGWRGDFGVRCG
back to top

mRNA from alignment at P-littoralis_Contig1209:34842..35324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1209.28.2 ID=mRNA_P-littoralis_Contig1209.28.2|Name=mRNA_P-littoralis_Contig1209.28.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig1209:34842..35324- (Pylaiella littoralis U1_48)
CCTTTGCGAGTATTTTTCTTGAGCGGCCGTCATCAACAGCTGCCATTTTG
TCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAGGTATTCATCAACGACAAG
TGGGCAGTTATGTACGGGGAGGAAGCCGTAAGGATTGACATGATGCAACA
CACGTGCAAACACAGCGCCAGTGTCGTCCATTTTGTTAGAGATGGAGCAT
GTCGGGAGCTCCTGATTTCAATTCGGGGCATTTTCCTTTCGGTAATCCGG
CGCTTTTGTTGCTTGCATGTTGTCCCATAACTATGTTCAAAGGCGTCCCT
GTGTATCCCTTTTTTTTTGCCCCTAACTAATGTCGTACGTTCATGCTTCG
TAATTGTTTTCTGTATTTTGGCCACAGATGTCAACATCATGGAGGCCGCC
GCCGGCGAGATGGATGATAGGAACGGGTGGACGTTACGGGACAGCAGTGG
CTGGCGAGGGGATTTCGGTGTCCGTTGCGGAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1209:34842..35324-

>mRNA_P-littoralis_Contig1209.28.2 ID=mRNA_P-littoralis_Contig1209.28.2|Name=mRNA_P-littoralis_Contig1209.28.2|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig1209:34842..35324- (Pylaiella littoralis U1_48)
CCTTTGCGAGTATTTTTCTTGAGCGGCCGTCATCAACAGCTGCCATTTTG
TCTTCCGCGGTTGCTTCTTGGGGTTCCCAAAGATGTCAACATCATGGAGG
CCGCCGCCGGCGAGATGGATGATAGGAACGGGTGGACGTTACGGGACAGC
AGTGGCTGGCGAGGGGATTTCGGTGTCCGTTGCGGA
back to top