mRNA_P-littoralis_Contig1208.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1208.14.1
Unique NamemRNA_P-littoralis_Contig1208.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1208.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1208contigP-littoralis_Contig1208:18757..19440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size224
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.6376524-CDS-P-littoralis_Contig1208:18756..189011680789517.6376524-CDS-P-littoralis_Contig1208:18756..18901Pylaiella littoralis U1_48CDSP-littoralis_Contig1208 18757..18901 -
1680789517.6510448-CDS-P-littoralis_Contig1208:19363..194401680789517.6510448-CDS-P-littoralis_Contig1208:19363..19440Pylaiella littoralis U1_48CDSP-littoralis_Contig1208 19364..19440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1208.14.1prot_P-littoralis_Contig1208.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1208 18757..19440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1208.14.1

>prot_P-littoralis_Contig1208.14.1 ID=prot_P-littoralis_Contig1208.14.1|Name=mRNA_P-littoralis_Contig1208.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MAPGGGPKRRKDGTFEDGWDALVHIRALECLLKTAWSTTCDVGRWISFDE
QMILCRHRTAKFMSRHMPKKPIKN
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mRNA from alignment at P-littoralis_Contig1208:18757..19440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1208.14.1 ID=mRNA_P-littoralis_Contig1208.14.1|Name=mRNA_P-littoralis_Contig1208.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig1208:18757..19440- (Pylaiella littoralis U1_48)
ATGGCGCCTGGTGGTGGTCCGAAGAGGCGCAAGGATGGTACATTCGAGGA
TGGATGGGATGCCCTTGTTCATATCCGGTAAGTCTGACCGGTGTGTGTGT
GTGTTCCGGTTTGTTTCGTAGTCGAGTTTACTGTGGACGTCAGTCGAAAA
TCCTGGTATAAGTTGGGCGCACCAGCCGGGGTCACACAGGAAACAGGTCA
ACATTTTGCTTTCTCTAACTTCCTTCGACGGGGCTTGCCTTCATTATTTT
TTCTTACGCTGAGTCGGCCGTCCCTTCCGATTCAAATTATACTTACTCGC
TGTATCATCTCTTTCCACTCATAGATTTATTTGGTCAGTAACAGACGAAC
CGGGATCAGAGCACACGCCGTACATGGGTGGAAGAAGGTTCCGGGGTTTC
CCGCTGAACCACCGTGGCAACTGGCTTACGTGCACCGACAATGAAAGGAA
GGAGCAGACACTTTTTTTTCTTTTTATAGTCCCTCCCTCTCCATCCCCGC
TTTCCCCTGTCGCCGTGCCCTGCATGTCGTGTCACGCAGTGCTTTGGAAT
GTCTATTAAAAACAGCATGGAGCACAACTTGTGACGTGGGACGATGGATT
TCTTTCGACGAGCAGATGATCTTGTGCCGCCACCGAACGGCAAAGTTCAT
GTCCAGGCACATGCCGAAGAAGCCTATAAAAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1208:18757..19440-

>mRNA_P-littoralis_Contig1208.14.1 ID=mRNA_P-littoralis_Contig1208.14.1|Name=mRNA_P-littoralis_Contig1208.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1208:18757..19440- (Pylaiella littoralis U1_48)
ATGGCGCCTGGTGGTGGTCCGAAGAGGCGCAAGGATGGTACATTCGAGGA
TGGATGGGATGCCCTTGTTCATATCCGTGCTTTGGAATGTCTATTAAAAA
CAGCATGGAGCACAACTTGTGACGTGGGACGATGGATTTCTTTCGACGAG
CAGATGATCTTGTGCCGCCACCGAACGGCAAAGTTCATGTCCAGGCACAT
GCCGAAGAAGCCTATAAAAAAC
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