mRNA_P-littoralis_Contig1206.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE) HSP 1 Score: 173 bits (439), Expect = 2.160e-50 Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
+DVA +W+ AE + + N + L IAA + R A AAA+AV R+C H+TPP PLP + L +R+AA +QH GLCG +HA+ I NI V ERA G ITTK +RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D+PL AV+AA
Sbjct: 35 DDVAAFWQHHAEGFCPQGNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.580e-47 Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVA 792
+DVA +W+ AE + + N + L +AA + R A AAA+AV R+C H+TPP PLP ++ L +R+AA +QH GLCG +HA+ I NI V ERA G ITTK +RNQACY+AGT LNA G GVQL+RQECFT+AC AVWP D+PL A +A
Sbjct: 5 DDVAAFWQHHAEGFCPQGNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLA 164
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE) HSP 1 Score: 157 bits (396), Expect = 3.520e-44 Identity = 77/133 (57.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query: 400 IAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
IAA + R A AAA+AV R+C H+TPP PLP ++ L +R+AAA+QH GLCG +HA+ I NI V RA G ITTK +RN+ACY+AGT LNA G GVQL+RQ+CFT ACRAVWP D+PL AV+ A
Sbjct: 45 IAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.650e-44 Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGD 765
+DVA +W+ AE + + N N+ L IAA + R A AAA+AV R+C H+TPP PLP ++ L + +AAA+QH G CG +H + I NI V ERA G ITTK +RNQACY+AGT LNA G GVQL+RQECFT+ACRAVWP D
Sbjct: 139 DDVAAFWQHHAEGFCPQGNPLNVWEELLLIAAQTPEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5KLA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA7_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.140e-29 Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNA 693
+DVA +W+ AE + + N ++ L IAA + R A AAA+AV R+C H+TPP PLP ++ L +R+AAA+QH GLCG +HA+ I NI V ER G ITTK +RNQACY+AGT LNA
Sbjct: 31 DDVAAFWQHHAEGFCPQGNPLHVWQELLLIAARTPVRFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVEERVAGAEITTKRMRNQACYDAGTALNA 157
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.190e-28 Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 421 LLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAV 786
LLR A V +C H+T P P+P M ++AAA +HPGLCGVHHA I + + V R+ G K RNQACY+ G +N G GVQLKR +CFT ACRAVWPG+E ++ +V
Sbjct: 40 LLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAA-EHPGLCGVHHAHIIAAVRTEDVTSRS-GFTAANK-FRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE) HSP 1 Score: 103 bits (258), Expect = 5.330e-23 Identity = 54/116 (46.55%), Postives = 67/116 (57.76%), Query Frame = 1
Query: 457 VARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAFLR 804
V R+C+H + P PL M++ KR+ AA HPGLCGV+HA I + V E+ T RNQACY +NA G GVQL R ECFT+ACRA+ PG + VV AF R
Sbjct: 121 VGARYCSHVSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQT--TGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAFHR 233
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K7F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F9_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 6.800e-22 Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 313 EDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALAVARRFCTHETPPPPLPKMTNLGKRRAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGP 702
+DVA +W+ AE + + N ++ L AA R A AAA+AV R+C H++PP PLP ++ L +R+AAA+QH GLCG +H++ I NI V ERA G ITTK +RNQ G+ P
Sbjct: 5 DDVAAFWQHHAEGFCPQGNPLHVWQELLLAAARRPERFREALQAAAVAVGARYCNHDSPPGPLPDISELPERQAAARQHAGLCGKYHSEHIANIDVTMVEERAAGTEITTKRMRNQCLLRRRDGVQRPRP 134
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.750e-20 Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 529 RAAAKQHPGLCGVHHAQFIGNISYDAVVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
+ AA +HPGLCGV+HA I + V+ R+ RNQACY+ +NA G GVQLKR+ECFT CRA+WPG +VV AF
Sbjct: 10 KVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGST--AANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAF 97
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Match: A0A6H5JI26_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI26_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.080e-19 Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 607 VVERARGVLITTKTLRNQACYEAGTGLNATGPGVQLKRQECFTKACRAVWPGDEPLQEAVVAAF 798
V ERA G ITTK + NQACY+AG LNA G GVQL+ QEC T+ACRAVWP D+PL AV+AA
Sbjct: 2 VEERAAGAEITTKRMMNQACYDAGMALNARGRGVQLRSQECSTQACRAVWPDDQPLPAAVLAAL 65 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1206.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1206.8.1 >prot_P-littoralis_Contig1206.8.1 ID=prot_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp MNEEDVAQYWEAQAEEWDEKENGSNIANALQTIAADSDHLLRGATTAAALback to top mRNA from alignment at P-littoralis_Contig1206:42036..43818+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1206.8.1 ID=mRNA_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1783bp|location=Sequence derived from alignment at P-littoralis_Contig1206:42036..43818+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1206:42036..43818+ >mRNA_P-littoralis_Contig1206.8.1 ID=mRNA_P-littoralis_Contig1206.8.1|Name=mRNA_P-littoralis_Contig1206.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig1206:42036..43818+ (Pylaiella littoralis U1_48)back to top |