mRNA_P-littoralis_Contig1201.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1201.8.1
Unique NamemRNA_P-littoralis_Contig1201.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1201.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1201contigP-littoralis_Contig1201:47530..48297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size768
Hectar predicted targeting categorysignal anchor
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.100006-UTR-P-littoralis_Contig1201:47529..478481680789516.100006-UTR-P-littoralis_Contig1201:47529..47848Pylaiella littoralis U1_48UTRP-littoralis_Contig1201 47530..47848 +
1680789516.1230922-UTR-P-littoralis_Contig1201:48283..482971680789516.1230922-UTR-P-littoralis_Contig1201:48283..48297Pylaiella littoralis U1_48UTRP-littoralis_Contig1201 48284..48297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.1126726-CDS-P-littoralis_Contig1201:47848..482831680789516.1126726-CDS-P-littoralis_Contig1201:47848..48283Pylaiella littoralis U1_48CDSP-littoralis_Contig1201 47849..48283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1201.8.1prot_P-littoralis_Contig1201.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1201 47849..48283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1201.8.1

>prot_P-littoralis_Contig1201.8.1 ID=prot_P-littoralis_Contig1201.8.1|Name=mRNA_P-littoralis_Contig1201.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MYALCAASSSDWLCVCKLLCVCPLRQVRNVYRDPHALFLFLCGVVLLPVS
LAPYRVLFLGHDEDEEVEMAWVDTMKSLHVVFGCRWKGVKPREEQLVGLG
LGIYTPVKVAGFMQVIPTTRLPLLDIVGNSTVASACVFGRFGSW*
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mRNA from alignment at P-littoralis_Contig1201:47530..48297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1201.8.1 ID=mRNA_P-littoralis_Contig1201.8.1|Name=mRNA_P-littoralis_Contig1201.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1201:47530..48297+ (Pylaiella littoralis U1_48)
TTCTTCAACACCGAGCCCTCCCCAATGGGTCGCCCGGCCGGCAACCAGGG
ACGGGTGTCGGCGCCGAGGAGAATATCCGCAGGCAGCTGGAACAACTAGG
AATGGGGCGGCCGGCGCACAATATCGCCAGAAATAGTGACCGCGGGCGGT
GAACACATGCACTTTTTGTTGTGAGGGAAGTTTGTTCGTTGCATTTCACG
TTCTGAGGGTTGTGTTGTGTGTTTTCGCTATCTGAGTGCAGGTAGTGACA
TATAAGCTCGTGCGCTTGACGACCGATATGTCGCCACGTACCCCGCAGTG
TGGGCGGTTATGTTAGTGCATGTATGCGCTTTGCGCTGCTTCGAGTTCGG
ACTGGCTCTGTGTGTGCAAACTACTTTGTGTATGCCCCCTTCGCCAAGTT
CGAAACGTCTACCGTGACCCACACGCCTTATTTTTGTTTCTTTGTGGGGT
TGTACTACTCCCTGTATCATTGGCGCCATATCGCGTTTTGTTTCTGGGTC
ATGATGAAGACGAGGAGGTTGAAATGGCCTGGGTAGATACCATGAAATCT
TTGCATGTGGTTTTTGGGTGCAGATGGAAAGGGGTGAAGCCTCGCGAGGA
ACAGTTGGTAGGGTTAGGGTTAGGAATATATACACCAGTGAAGGTTGCGG
GTTTCATGCAGGTAATACCAACGACACGTCTGCCGCTGCTAGACATAGTT
GGGAATAGCACTGTAGCATCGGCGTGTGTATTTGGCAGGTTTGGTTCGTG
GTGAGCCGACTGATTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1201:47530..48297+

>mRNA_P-littoralis_Contig1201.8.1 ID=mRNA_P-littoralis_Contig1201.8.1|Name=mRNA_P-littoralis_Contig1201.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig1201:47530..48297+ (Pylaiella littoralis U1_48)
ATGTATGCGCTTTGCGCTGCTTCGAGTTCGGACTGGCTCTGTGTGTGCAA
ACTACTTTGTGTATGCCCCCTTCGCCAAGTTCGAAACGTCTACCGTGACC
CACACGCCTTATTTTTGTTTCTTTGTGGGGTTGTACTACTCCCTGTATCA
TTGGCGCCATATCGCGTTTTGTTTCTGGGTCATGATGAAGACGAGGAGGT
TGAAATGGCCTGGGTAGATACCATGAAATCTTTGCATGTGGTTTTTGGGT
GCAGATGGAAAGGGGTGAAGCCTCGCGAGGAACAGTTGGTAGGGTTAGGG
TTAGGAATATATACACCAGTGAAGGTTGCGGGTTTCATGCAGGTAATACC
AACGACACGTCTGCCGCTGCTAGACATAGTTGGGAATAGCACTGTAGCAT
CGGCGTGTGTATTTGGCAGGTTTGGTTCGTGGTGA
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