mRNA_P-littoralis_Contig120.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.6.1
Unique NamemRNA_P-littoralis_Contig120.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.030e-26
Identity = 64/161 (39.75%), Postives = 90/161 (55.90%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQ 483
            ++ED TF + FRM  + F  L  ILRP+L   +   G  RNG I     L   LR+LAGGS+ EV      ++S AY +V   +DAIN  R+L  +WP   ++    A  +R RS N +IRRC+GA+DG+ +++     K H  P  F+ G KK  G+N Q
Sbjct:   64 MVEDNTFRKRFRMDYTDFMTLADILRPKLQ-RDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWP-YGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.990e-26
Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQ 483
            +++DGTF   FRM  + F  L  +LRP+L   N   G  RNG I     L   LR+LAGGS+ EV      +RS AY +V   +DAIN  R L   WP   E+       +R RS N +IR C+GA+DG+ ++M +   + HV P  F+ G KK  G+N Q
Sbjct:   60 MVQDGTFRLRFRMDYTEFALLADMLRPKLE-RNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPE-GEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.310e-23
Identity = 59/151 (39.07%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   37 MSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNF--IIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQ 483
            MSP  F+ LY +LR RL   +   G   NG I    AL   LRWLAG  +         + S A+  +   LDAIND  RLR++WPR   E    A  F  R      +++RC+GA++G+ ++ KK    EH  P RFF G K  VG+N Q
Sbjct:    1 MSPKEFKGLYEMLRGRLE-CHGPEGRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ 150          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.980e-21
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            +++D TF+  FRM    F  L   LRP L   N   G+ RNG I     +   LRWLAGGSI+E       +RS AY +    ++A+N C  L  +WP   E+  +  +     +   ++R+C+GA+DG+ ++M K   KE   P+ ++ G KK  G+N QV
Sbjct:   64 MLQDHTFSMRFRMEYDDFRVLVDHLRPALQ-QNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPE-GEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6A3MSZ9_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MSZ9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.030e-19
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANR-SRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            L+++G F + ++MS S F  L   L P L +  + SR  T   P      +  CLRWL+GGS H+VR + G S SA Y  +   +DAI     L++++P + + + +VA  F + S + +++ C+GAVDG    ++   KKE      FF G  +  G+N+QV
Sbjct:   44 LVDEGLFHKCYKMSCSSFMALAAKLEPYLPVDEKQSRNRTGIEPATHVYKIQMCLRWLSGGSYHDVREISGVSVSAFYTSIHEVVDAITAHAELQLQFPTSVQAQRRVAKAFEQLSNSHVMKGCVGAVDGWLCPIRVPQKKEVSRVRSFFCGHYQRYGVNVQV 206          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.640e-19
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   73 LRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            LRP L   N+  G+ RNG I     +   LRWLAGGSI+E       +RS AY +    ++A+N C  L  +WP   E+  + A  FR RS   ++R+C+GA DG+ ++M K   KE   P+ ++ G KK  G+N Q 
Sbjct:   77 LRPALQ-KNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE-GEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.750e-19
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  109 GMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            G+ RNG I     +   LRWLAGGSI+E       +RS AY +    ++A+N C  L  +WP   E+  + A  FR RS   ++R+C+GA+D + ++M K   KE   P+ ++ G KK  G+N QV
Sbjct:    2 GLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE-GEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.190e-17
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDG--VTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            L+ +  F   +RM  + F +L  +L P L+ +  +    + G I    AL   LR+ AGGS+H++RRV G S+++ Y ++   +DAIN    LR+ +PR+   R   AA F+  S   +   C+G VDG    I+  +  +   V P R++ G  +C G+N+Q 
Sbjct:   40 LLAESQFEACYRMPAAAFVQLEDLLAPTLHRSPHA--WVQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPTAREASAAAFKTLSAEGVFSGCVGCVDGWLCAIRAPRLAETGGVGPQRYYSGHYRCYGVNVQA 201          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.640e-17
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCV 468
            L++D TF+  FRM    F  L   LRP L+  N   G+ R G I     +   LRWLAGGSI+E       +RS AY +    ++A+N C  L  +WP    +               ++R+C+GA+DG+ ++M K   KE   P+ ++ G +K V
Sbjct:   64 LLQDHTFSVRFRMEYDDFRVLIDHLRPALH-KNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV 203          
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Match: A0A225UUP6_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUP6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.450e-17
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 LIEDGTFAQNFRMSPSPFEKLYGILRPRLYL-----ANRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRTAEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFFGQKKCVGLNMQV 486
            L+++ TF + +RMS S F++L  I+ P L +       RSRG+    P  P   L   L WLAGGS H +R ++G + +  Y +V   + AIND  +L  R+P T +E    AA FR  S + +I  C+G +DG    ++   K E      FF    +  GLN+Q 
Sbjct:   64 LVKEKTFNRYYRMSFSTFQELLCIVGPYLVVDYYQSLRRSRGIP---PPSPATMLQCALSWLAGGSYHHIRVIMGVNTATFYCIVYRVMFAINDSDKLAPRFPSTPQELSASAAAFRSCSNHGVIENCIGVIDGWFCPVRVPRKDECGRILSFFSRHYQKYGLNVQA 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6M2_9PHAE2.030e-2639.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE6.990e-2640.37DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J5V5_9PHAE2.310e-2339.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA1_9PHAE9.980e-2135.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3MSZ9_9STRA2.030e-1934.36DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5L6B6_9PHAE5.640e-1938.41DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE8.750e-1938.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6A3QK27_9STRA1.190e-1732.32DDE Tnp4 domain-containing protein n=2 Tax=Phytoph... [more]
A0A6H5JVS8_9PHAE3.640e-1733.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A225UUP6_9STRA7.450e-1734.73DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:61548..62042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000023786
Model size495
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.84e-23
EggNOG OGs2F2X2@1|root,2T3VU@2759|Eukaryota,1MJPM@121069|Pythiales
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789514.52026-CDS-P-littoralis_Contig120:61547..620421680789514.52026-CDS-P-littoralis_Contig120:61547..62042Pylaiella littoralis U1_48CDSP-littoralis_Contig120 61548..62042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.6.1prot_P-littoralis_Contig120.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 61548..62042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.6.1

>prot_P-littoralis_Contig120.6.1 ID=prot_P-littoralis_Contig120.6.1|Name=mRNA_P-littoralis_Contig120.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
LIEDGTFAQNFRMSPSPFEKLYGILRPRLYLANRSRGMTRNGPIHPGMAL
LGCLRWLAGGSIHEVRRVVGCSRSAAYVLVGAALDAINDCRRLRVRWPRT
AEERWKVAAGFRERSPNFIIRRCLGAVDGVTIKMKKRGKKEHVCPDRFFF
GQKKCVGLNMQVRT*
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mRNA from alignment at P-littoralis_Contig120:61548..62042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.6.1 ID=mRNA_P-littoralis_Contig120.6.1|Name=mRNA_P-littoralis_Contig120.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig120:61548..62042+ (Pylaiella littoralis U1_48)
CTGATCGAGGACGGGACTTTTGCACAGAATTTCCGCATGTCGCCTTCGCC TTTCGAGAAGCTGTACGGTATACTGCGCCCCCGGCTGTATCTGGCAAATC GGAGTCGAGGCATGACCCGCAACGGTCCAATCCACCCCGGTATGGCTCTT CTCGGATGCCTGCGGTGGCTCGCCGGCGGGAGCATTCATGAGGTGCGGAG AGTAGTTGGGTGCAGCAGGTCGGCAGCGTACGTTTTGGTGGGTGCTGCAT TGGACGCCATCAACGACTGCCGGAGGCTCCGGGTACGCTGGCCGCGCACG GCGGAAGAGAGGTGGAAGGTCGCGGCCGGTTTCAGAGAGAGGAGCCCGAA TTTCATCATCAGGCGGTGCCTCGGGGCGGTGGACGGTGTCACGATCAAGA TGAAGAAGCGTGGGAAGAAGGAACACGTGTGCCCTGACCGCTTTTTTTTT GGCCAAAAGAAGTGTGTCGGGCTAAACATGCAGGTACGTACGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:61548..62042+

>mRNA_P-littoralis_Contig120.6.1 ID=mRNA_P-littoralis_Contig120.6.1|Name=mRNA_P-littoralis_Contig120.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig120:61548..62042+ (Pylaiella littoralis U1_48)
CTGATCGAGGACGGGACTTTTGCACAGAATTTCCGCATGTCGCCTTCGCC
TTTCGAGAAGCTGTACGGTATACTGCGCCCCCGGCTGTATCTGGCAAATC
GGAGTCGAGGCATGACCCGCAACGGTCCAATCCACCCCGGTATGGCTCTT
CTCGGATGCCTGCGGTGGCTCGCCGGCGGGAGCATTCATGAGGTGCGGAG
AGTAGTTGGGTGCAGCAGGTCGGCAGCGTACGTTTTGGTGGGTGCTGCAT
TGGACGCCATCAACGACTGCCGGAGGCTCCGGGTACGCTGGCCGCGCACG
GCGGAAGAGAGGTGGAAGGTCGCGGCCGGTTTCAGAGAGAGGAGCCCGAA
TTTCATCATCAGGCGGTGCCTCGGGGCGGTGGACGGTGTCACGATCAAGA
TGAAGAAGCGTGGGAAGAAGGAACACGTGTGCCCTGACCGCTTTTTTTTT
GGCCAAAAGAAGTGTGTCGGGCTAAACATGCAGGTACGTACGTAA
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