mRNA_P-littoralis_Contig120.47.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5J641_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J641_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.510e-51 Identity = 87/133 (65.41%), Postives = 99/133 (74.44%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPPPTTARFLDDDGTIRSNRWATPSTGRPPAATSQTREDIREDVRERTLLRPAQNIARNRGWRTAI 399
PGC+LDA AF+FFQSQGRMCIEQTFGIM V LRNTA VVHA+TRLHN+LRRCRSEPPP TARFL+++GTIRSNRWATPS R +IRE++R RT +RPA+NI RNR WRTAI
Sbjct: 64 PGCDLDADQQAFNFFQSQGRMCIEQTFGIM------------VHLRNTASVVHAITRLHNYLRRCRSEPPPATARFLNENGTIRSNRWATPSDSR----------NIRENIRNRTFMRPAENIPRNRRWRTAI 174
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.400e-18 Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
PG +L A+ DA +++ SQ RM IEQT+GI+++ + IL +P+ V + VV+AV RLHNF R + + PPP A DDDG I S+ + T TGRP A S+ RE IR+++ L+RP NIAR+
Sbjct: 120 PGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 258
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.220e-17 Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
PG +L A+ DA +++ SQ RM IEQT+GI+++ + IL +P+ V + VV+AV RLHNF R + + PPP A DDDG I S+ + T TGRP A S+ RE IR+++ L+RP NIAR+
Sbjct: 272 PGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 410
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.270e-17 Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE--------PPPTTARFLDDDGTIRSNRWATPSTGRPPAATS--QTREDIREDVRERTLLRPAQNIARN 378
PG L + DA++F+QSQ R+ IEQ FGI++K + IL KPL + L V++A+ RLHNFLRR R+ P P + F D G S P+ GRP A RE IR+ + ++++ RP N+ RN
Sbjct: 283 PGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRRRAPVLQSAWNVPMPESVTFHPDGGIDGSYYDTVPTRGRPSKAAEVCMPREIIRDYLDQKSMGRPRFNLNRN 418
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.180e-17 Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPP--------PTTARFLDDDGTIRSNRWAT-PSTGRPPAA--TSQTREDIREDVRERTLLRPAQNIARNRG 384
PG +L + DA++F+QSQ R+ IEQ FGIM+K + IL +PL + L + V+++V RLHNFLRR R+ P P RF D G++ + T P+ GR S RE IR+ + + ++ RP N+ RN G
Sbjct: 279 PGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSPWRVTQPVEVRFRPD-GSLEGTYFDTVPTRGRQTRGGRASAPREAIRQYLEQYSIGRPRWNLQRNSG 416
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 4.410e-9 Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query: 70 EQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
EQT+GI+++ + IL +P+ V + VV+AV RLHNF + + PPP A DDDG I S+ + T TGRP A S+ RE IR+++ L+RP NIAR+
Sbjct: 274 EQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 389
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 4.620e-8 Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
PG +L A+ DA + + SQ RM IEQT+GI+++ + IL +P+ V + VV DDDG I S+ + T TGRP A S+ RE IR+++ L+RP NIAR+
Sbjct: 221 PGTSLSASQDACNNYVSQYRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVV-----------------------AFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLIRPEHNIARS 328
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JA67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA67_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 4.400e-7 Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKL 99
PGC+L+A DAF+FFQSQGR+CIEQTFGIM L
Sbjct: 38 PGCDLNADQDAFNFFQSQGRICIEQTFGIMATL 70 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig120.47.1 >prot_P-littoralis_Contig120.47.1 ID=prot_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp MCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPPback to top mRNA from alignment at P-littoralis_Contig120:317388..318109- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig120.47.1 ID=mRNA_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=722bp|location=Sequence derived from alignment at P-littoralis_Contig120:317388..318109- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig120:317388..318109- >mRNA_P-littoralis_Contig120.47.1 ID=mRNA_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig120:317388..318109- (Pylaiella littoralis U1_48)back to top |