mRNA_P-littoralis_Contig12.54.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig12.54.1 vs. uniprot
Match: D8LAV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV4_ECTSI) HSP 1 Score: 506 bits (1304), Expect = 7.700e-151 Identity = 523/1106 (47.29%), Postives = 605/1106 (54.70%), Query Frame = 2
Query: 203 QQAGAAIPSTTAPEPSAAPPKNPFRTRHQLPRTPLSSKNGNNNRGSSRNPGSRARSASSPAVTKIPRSSRFARSASP--SPKSSGPSTXXXXXXXXXXXXXXATISENLSVITTPVADTKRIEEEMLAAFARTPKVARTPPKGSAPLAPAGSAAATAAGTSLAREKPMSERSTVQLSEVPPAAAGEEGQSRGVAPHQPEHTAHPHVMSAAPQQPALALPGATTAESVVSMRNAPPRENLSGSRDAKPAPAESAAELVFGRGAKLLRTPPLSSDEV-----------------------SGDCGFAGHNAAGESQXXXXXXXXXXXXRAQLQW----VGLRPAAVQSAAPGRGAVRSVPPTAPADGCGATGSPSRVASPSMSRDSSCTGAANVRSLAGSASSKTAEVAGVGGXXXAPRGRKRAAAENGGALTPAAFEGLISVMRTPSTGMKRPDAVVSEVPQMKSLDA-VKTTVVHPPAPRGSMAPRGNSRVATGKPRYASCVEEARAAAXXXXXXXXXXXXXXXXXXXXXXXXXVATGPTRSTSQPMAEN-------------------------IQAPTANPSVP--SEVASAAAPVNILGDAGEVAASSAVSNNDAGLVTLPPLPRIQGEVAAGPSVSAGG---AEQGTDSFVRSQKLTRVP---PXXXXXXXXXXNATTTAEVA----TPLPSVTSKDGGVVGGALTAES---PPEAVTPKPSGGDEG--GKRSPEEPLACDPFASRSNIPRTPTEQDTQPXXXXXXXXXXXXSSERGVRAAGESV---DAEPMEVEEARLQIGELHQEIASMNDRLIKQGEERNRLAEAAFEAQDEAAKLRQQLRELERRQALHRDSASGREDGNSKLSRLIGRGGGGGCTDAGMTEVDDGVRGSVGVTAGRVVQLEIEKWEMEQGREEXXXXXXXXXXXXXXXXXXXXXA--KVRELTRSAEARYMELLEERLRRARELCDQDERAMDEHQMKVKIFIAEKRAEILRARVAKEGRARAAKGVRSAAVAVAGKACKVVREFVTRNARMSRRVAGLRAIVEEREERVSQLKERSAVLEARGRSDRGEAEAVRVQLAAATEELEDAKTSREVLE 3289
QQ + IP AP P+AAPPK+PFRT+ QLPRTPLSSK GN R PGSRAR+ SP+VTKIPRSS FARSASP SP ++ ST XXXXXXXXXXX ++TTP ADTKRIEEEMLAAFARTPKVARTPPKGSA +E R +LS P A GQ GV HP+ PQ A R P + G P AE A E VFG AK+ RTPP D V SG G G N E + +Q Q G+ A + AP + + P A A GSP+R+ASPS+S DSS T AANVRSLAGS SSK +V VGG P G GALTPAAF+GL S MRTPSTGM+R A +EVPQMKSLDA V T H PAPRG A R +R A +PRYAS V EA+AAAXXXXXXXXXXXXXXXXXXXXXX GPT ++P+ + P A+PS P SE AA P LG AG +AA S + D G AGP S G AE G D FVRSQK+ R P P AT AE A T VT+ G V G ++ P + P+ + + G G+RSPE P DPFASRSNIPRTPT+Q P E V+ GE V DA PM EARL+IGELHQE+A M DRL KQ EERNRLA+ AFEAQDEA KLRQQL + ++R+ + + + + E D RV+QLEIEK E E XXXXXXXXXXXXXXXXX A KVRELT SAEA+ ++LEE+LRR RE C QDERA++EHQ+KVK+FIA KRAEILRA+ +++ R RA + VRSAAVAVAG+A +VVRE V+RNARMSRRVAG RAIVEER+ RVS+LKERSA+LEA GRS + EAEAVR QLA A E+LE AK S LE
Sbjct: 35 QQRVSGIPPVGAPAPAAAPPKDPFRTKRQLPRTPLSSKTGN------RLPGSRARA--SPSVTKIPRSSHFARSASPARSPPAASVSTPTGXXXXXXXXXXXXXXXAVGEIVTTPAADTKRIEEEMLAAFARTPKVARTPPKGSAXRG--------------GQEAAGGARPAPRLSAKTPEPAAFGGQPGGVGQQ------HPNGSRIPPQAEAXXXXXXXXXXXXXXGR-VPDEDPSRG-----PVAAEPAFESVFGGRAKVARTPPQRVDAVLSTEKKGAAGVGQQVAANPEGGYSGLHGGGGSNGGQEEREGESKAGLNDAQESQRQQQRSGFGVPSATAAAHAP----LPAAPERAGVRDAAAGGSPARLASPSVSTDSSFTNAANVRSLAGS-SSKAPDV--VGGR---PGGGGFC-----GALTPAAFKGLTSAMRTPSTGMERRGAPANEVPQMKSLDAAVAPTAHHKPAPRGPSAARAMNRAAPPRPRYASSVAEAKAAAXXXXXXXXXXXXXXXXXXXXXXE----AGPTARDTEPITSSGGRFAAXXXXXXXXXXXXXXXXSADTSGPPASPSAPPSSEAVPAAEPGEALGGAGGMAAPSTLGEADPGXXXXXXXXXXXXGAPAGPGESGNGRTDAELGVDPFVRSQKIARTPTRGPAVGAVPRGVAPATDVAETAAADETAAAGVTTTHGAVAHGTQDGDADAVPGTEIRPEEATPEVGVEGERSPEAP-GGDPFASRSNIPRTPTDQVAPPR-------------ESFVQEGGERVERGDAGPMGEGEARLRIGELHQELACMTDRLTKQAEERNRLADVAFEAQDEAIKLRQQLEQFQQRERKNGGDGAPSDATSGXXXXXXXXXXXXXXXXCAEDETD-----------ARVLQLEIEKLETEXXXXXXXXXXXXXXXXXXXXXXALDEARAKVRELTLSAEAQREKMLEEKLRRDREQCKQDERAIEEHQIKVKLFIANKRAEILRAQASEKERLRAEQVVRSAAVAVAGRAFEVVRELVSRNARMSRRVAGWRAIVEERQRRVSELKERSALLEASGRSAQDEAEAVREQLARAMEDLEAAKESSGELE 1062
BLAST of mRNA_P-littoralis_Contig12.54.1 vs. uniprot
Match: A0A6H5JU15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU15_9PHAE) HSP 1 Score: 523 bits (1346), Expect = 3.810e-150 Identity = 823/1967 (41.84%), Postives = 961/1967 (48.86%), Query Frame = 2
Query: 155 HPQSRPAQQGSGAAHNQQAGAAIPSTTAPEPSAAPPKNPFRTRHQLPRTPLSSKNGNNNRGSSRNPGSRARSASSPAVTKIPRSSRFARSASP--SPKSSGPSTXXXXXXXXXXXXXXATISENLSVITTPVADTKRIEEEMLAAFARTPKVARTPPKGSAPLAPAGSAAATAAGTSLAREKPMSERSTVQLSEVPPAAAGEEGQSRGVAPHQPEHTAHPHVMSAAPQQPALALPGATTAESVVSMRNAPPRENLSGSRDAKPAPAESAAELVFGRGAKLLRTPPLSSDE--------------------------VSGDCGFAGHNAAGESQXXXXXXXXXXXXRAQLQWVGLRPAAVQSAAPGRGAVRSVPPTAPADGCGATGSPSRVASPSMSRDSSCTGAANVRSLAGSASSKTAEVAGVGGXXXAPRGRKRAAAENGGALTPAAFEGLISVMRTPSTGMKRPDAVVSEVPQMKSLDA-VKTTVVHPPAPRGSMAPRGNSRVATGKPRYASCVEEARAAAXXXXXXXXXXXXXXXXXXXXXXXXXVATGPTRSTSQPMAEN---------------------IQAPTANP--SVPSEVASAAAPVNILGDAGEVAASSAVSNNDAGLVTLPPLPRIQGEVAAGPSVSAGG---AEQGTDSFVRSQKLTRVP---PXXXXXXXXXXNATTTAEVA----TPLPSVTSKDGGVVGGALTAESPPEAVTPK------PSGGDEGGKRSPEEPLACDPFASRSNIPRTPTEQDTQPXXXXXXXXXXXXSSERGVRAAGESVDAEPMEVEEARLQIGELHQEIASMNDRLIKQGEERNRLAEAAFEAQDEAAKLRQQLRELERRQALHRDSASGREDGNSKLSRLIGRGGGGGCTDAGMTEVDDGVRGSVGVTAGRVVQLEIEKWEMEQGREEXXXXXXXXXXXXXXXXXXXXX--AKVRELTRSAEARYMELLEERLRRARELCDQDERAMDEHQMKVKIFIAEKRAEILRARVAKEGRARAAKGVRSAAVAVAGKACKVVREFVTRNARMSRRVAGLRAIVEEREERVSQLKERSAVLEARGRSDRGEAEAVRVQLAAATEELEDAKTSREVLEAXXXXXXXXXXXXXXXXXXLRALVDAEEARRVSVEQRLSEVKRNGESVT--EKNRRLSVERRLEYAEKARTELSATVAESAAXXXXXXXXXXXXXXXXXXXXXXXXXRESSGAAAGVAGASVR------------------------------------------------------------------------------DVTAVSPPPKEAP----------------------------------SKRARSEE----------------MDVSEDN-------------------------ESLSAPAKVTQSRKSDAAKKSGTAPVCAGFSGERKVSAVSDDGDGDGKEVPA-APTRATAGPTTTTGRTGRKRKPINYAKSSSSVDLDSSDDDVAAAVRARSSKGRRSIAGSKGAAA-------RYRXXXXXXXXXXXXXXXXXGGAKGVRAIKESPAVALGSKKPRSVVGGAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSSVLPAAVEEVGSAXXXXXXXXXXXXXXXXXXXXXEESVLEAPAPVVEKLARQKRRSTNDEEGNDGTVDAPGSEGGDSTPVTAVRGAKKAGGGKSLNRAPKVVQKPQQVLAIRSADLPVID--------------------LSPIPPPQKRPRKLLGGGTSRCKTPKAKKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPARVAGVGPKSG------LGAAXXXXXXXXXXXXXXATVPETTTVSGAGNLSAVASAGGGVGRGSAGRGDAGGAPAKKPAFRPLKLSTNSILAMRGKPSLKSSLFKGFLDPKNGFKIPKLKARENR 5278
H S+P ++ G Q+A + IP AP P+AAPPK+PFRT+ QLPRTPLSSK GN R PGSRAR+ SP+VTKIPR S FARS SP SP ++G ST XXXXXXXXXX ++TTP ADTKRIEEE+LAAFARTPKVARTPPKGSAP AAG AR P R + +L E PAA G GQ GV H + PQ A A P E+ S +P E A E VFG AK+ R PP + D + G CG G E + R Q Q G +V +AA + + P A A GSP R+ASPS+S DSS T AANVRSLAGS SSK +V G G GALTPAAF+GL S MRTPSTGM+R A +EVPQMKSLDA V T H PAPRG A R +R A +PRYAS V EA XXXXXXXXXXXXXXXXXXXXXXXXX GPT ++P+ + A T+ P S+ + S A P AGP S G AE D FVRSQK+ R P P AT AE A T VT+ G VVG +S T + P G E G+ SPE P A DPFASRSNIPRTPT+Q P + ERG R DA PM EEARL+IGELHQE+A M DRL KQ EERNRLA+ AFEAQDE KLRQQL E ++R+ + DG + G GGG + G+T RG T RV+QLEIEK E XXXXXXXXXXXXXXXXX X AKVRELT SAEA+ ++LEE+LRR RE C QDERA++EHQ+KVK+FIA KRAEILRA+ ++E R RA + VRSAAVAVAG+A +VVRE V RNARMSRRVAG RAIVE+R+ VS+LKERSA+LEA GRS + EAEAVR QLA A E+LE AK S LEA LR V+ + E+RLSEVK +GE+V E+ RR S ERRL AE++R EL+ A +A XXXXXXXXXXXXXXXX A VA ++ +TA +P + AP S++A E +D + N + S PAKV Q RK+ AK P A G R + D VPA AP+ + T R GR RK +NYA+SS ++ LDSSD+DV AA +R G+R+ A ++ + XXXXXXXXXX GG G A S A AL + GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + E+ GSAXXXXX XXXXXXXXXXXXXX D D V++ +EG S P R GGGKS RA VQ+P +V I S D ++ LSPI PP KRPRKLLGGGTSRCKTP+ KK + XXXXXXXXXXXXXXXXXXXXXXXXX GVGPKSG +A A V + +V G G S A A KPAF+P+KLST SILAMRGK + K++LFKGFLDPK GFK+PKLK R
Sbjct: 20 HTGSKPMERPGGQPQQQRA-SGIPPVGAPAPAAAPPKDPFRTKRQLPRTPLSSKTGN------RLPGSRARA--SPSVTKIPRPSPFARSGSPARSPPAAGVSTPTGSXXXXXXXXXXXXAGAVGEIVTTPAADTKRIEEEILAAFARTPKVARTPPKGSAPQG-----GQEAAGG--ARPVP---RLSAKLPE--PAAFG--GQPGGVGQQ------HLNGSRIPPQAEAEA--------------GRVPDEDPSR----RPVAVEPAFESVFGGRAKVARNPPRTVDAALSTNKEGAAEAGQQAAANPEGGYSGLHGGCGSNGGQEEKEGESTSGLNDAKESQRQQ-QRSGFGVPSVTAAA--HAPLPAAPERAGVRDAAAGGSPCRLASPSVSTDSSFTNAANVRSLAGS-SSKAPDVVGRSGFC--------------GALTPAAFKGLTSAMRTPSTGMERRGAPANEVPQMKSLDAAVAPTAHHKPAPRGPSAARAMNRAAPPRPRYASSVAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGPTARDTEPITSSGGPFXXXXXXXXXXXXXXXXXXXADTSGPPASLSAPPPSEAVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPGESGNGRNDAELDVDPFVRSQKIARTPTRGPAVGAVPRGVAPATDVAEKAVVDETAASGVTATHGVVVGDTQDGDSDAVPGTERRTEEATPEVGVE-GEGSPEAP-AGDPFASRSNIPRTPTDQVAPPRESL--------AQERGERG-----DAGPMGEEEARLRIGELHQELACMADRLTKQAEERNRLADVAFEAQDEVIKLRQQLEEFQQRERQNGG------DGAPSDATSGSNGEGGGPSWEGVTAG----RGE-DETDARVLQLEIEKLETXXXXXXXXXXXXXXXXXXXXXXXALDXXRAKVRELTLSAEAQREKMLEEKLRRDRERCKQDERAIEEHQIKVKLFIANKRAEILRAQASEEERLRAEQVVRSAAVAVAGRAFEVVRELVARNARMSRRVAGWRAIVEKRQRHVSELKERSALLEASGRSAQDEAEAVREQLARAMEDLEAAKESSGELEARLGSLEKECQEAHTAQERLRKWVEK------AGERRLSEVKHDGENVIGIERARRQSTERRLGLAERSRDELAVAAASAAGSALRQVAETXXXXXXXXXXXXXXXXXXXXXXXATVAESAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVSITAATPALESAPLAAATSLXXXXXXXXXXXXXXXXXXXXXXXXXKKSRKAVGSEATGGAVTDKKSKGVATLDDGKANVAPXXXXXXXXXXXXXXXXXXXXHRQDESLPAKVVQRRKTAPAK-----PAVAAPDGNRLATTGKSPSSTD--SVPAVAPSGTVHAASGTITRGGRSRKEVNYAESSVNLSLDSSDEDVTAARSSRPRPGKRNTAAARSHRSVTADLSDEXXXXXXXXXXXXGRKKPRSGGGGGYEAGVLSTAAALEASTTAGAXSGASTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPL-GGELESDSREDSGSAXXXXXHAXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXDGSARDDAVES--TEGQVSIPAKTRRD----GGGKSTGRASTAVQEPDKVCGISSEDAEEVEAPSAPKPSTKGKGEDLLTTNLSPIAPPPKRPRKLLGGGTSRCKTPQPKKNSKASRTDXXXXXXXXXXXXXXXXXXXXXXXXX----------ARGVGPKSGGXXXXXXXSANVAAAKGTVVGGVSAGVRPSPSVGGGGGSSHAA--------------------AVKPAFKPVKLSTTSILAMRGKSTSKTALFKGFLDPKKGFKVPKLKVGAKR 1843
BLAST of mRNA_P-littoralis_Contig12.54.1 vs. uniprot
Match: D8LAV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV5_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.830e-18 Identity = 125/237 (52.74%), Postives = 138/237 (58.23%), Query Frame = 2
Query: 4619 GGGKSLNRAPKVVQKPQQVLAI-------RSADLPVIDLSPIPPPQKRPRKLLGGGTSRCKTPKAKKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPARVAGVGPKSGLGAAXXXXXXXXXXXXXXATVPETTTVSGAGNLSAVASAGGGVGRGSAGRGDAGG----------APAKKPAFRPLKLSTNSILAMRGKPSLKSSLFKGFLDPKNGFKIPKLKARENR 5278
GGGKS RA VQ+P +V + + DL LSPI PP KRPRKLLGGGTSRCKTP+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVGPKSG XX + V+ A + A GGV G GG A A KPAF+PLKLST SILAMRGK + K++LFKGFLDPK GFK+PKLK R
Sbjct: 186 GGGKSTGRASTAVQEPDKVPSAPKPSTKGKGEDLLTTKLSPIAPPPKRPRKLLGGGTSRCKTPQP-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGPKSG---------------GXXXXXXXSANVAAARGMVA-----GGVATGVRPSPAVGGNXXXXXXXXDAAAVKPAFKPLKLSTTSILAMRGKSTSKTALFKGFLDPKKGFKVPKLKVGAKR 395 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig12.54.1 >prot_P-littoralis_Contig12.54.1 ID=prot_P-littoralis_Contig12.54.1|Name=mRNA_P-littoralis_Contig12.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1739bp MLRRWHTAPTDVTVNQQQPSSTRSLTGCPHPQSRPAQQGSGAAHNQQAGAback to top mRNA from alignment at P-littoralis_Contig12:251224..266718+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig12.54.1 ID=mRNA_P-littoralis_Contig12.54.1|Name=mRNA_P-littoralis_Contig12.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=15495bp|location=Sequence derived from alignment at P-littoralis_Contig12:251224..266718+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig12:251224..266718+ >mRNA_P-littoralis_Contig12.54.1 ID=mRNA_P-littoralis_Contig12.54.1|Name=mRNA_P-littoralis_Contig12.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=5217bp|location=Sequence derived from alignment at P-littoralis_Contig12:251224..266718+ (Pylaiella littoralis U1_48)back to top |