mRNA_P-littoralis_Contig12.252.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.252.1
Unique NamemRNA_P-littoralis_Contig12.252.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:1107454..1107847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.5611322-CDS-P-littoralis_Contig12:1107455..11075301680789504.5611322-CDS-P-littoralis_Contig12:1107455..1107530Pylaiella littoralis U1_48CDSP-littoralis_Contig12 1107456..1107530 -
1680789504.5787997-CDS-P-littoralis_Contig12:1107757..11078471680789504.5787997-CDS-P-littoralis_Contig12:1107757..1107847Pylaiella littoralis U1_48CDSP-littoralis_Contig12 1107758..1107847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.252.1prot_P-littoralis_Contig12.252.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 1107456..1107847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.252.1

>prot_P-littoralis_Contig12.252.1 ID=prot_P-littoralis_Contig12.252.1|Name=mRNA_P-littoralis_Contig12.252.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
LTENRPHRTHRCWSLTHGENTYTEVTAVVPISRPWASSSGWTRRPTLRTS
HPGWT
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mRNA from alignment at P-littoralis_Contig12:1107454..1107847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.252.1 ID=mRNA_P-littoralis_Contig12.252.1|Name=mRNA_P-littoralis_Contig12.252.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig12:1107454..1107847- (Pylaiella littoralis U1_48)
TTAACAGAGAACAGGCCGCACCGCACACATAGATGTTGGTCGCTGACACA
CGGAGAGAACACCTACACCGAAGTGACAGCAGTAGTACCGGTAAGGGGCG
ACCATGTCGGGGGAATCGTTGAACCTCTTCATGAACCAAGCCGTGGAATG
GGTCCTTGACCGAATGCGAAAGACGATCTGGAAAAACAAGGCCAACCGTG
GGGACGCTCAGCTCTTCCAGTTCGTCCCGGCGTACTATGCTGTAATGAGC
GTAAAGGAGAGCGGCACCACCTTCGATGACGGAGGGAAGGGCGCGCAATC
GGTCCGACGTTATGAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGG
ACGAGACGGCCAACTTTACGAACCTCCCATCCTGGTTGGACAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:1107454..1107847-

>mRNA_P-littoralis_Contig12.252.1 ID=mRNA_P-littoralis_Contig12.252.1|Name=mRNA_P-littoralis_Contig12.252.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig12:1107454..1107847- (Pylaiella littoralis U1_48)
TTAACAGAGAACAGGCCGCACCGCACACATAGATGTTGGTCGCTGACACA
CGGAGAGAACACCTACACCGAAGTGACAGCAGTAGTACCGATTTCACGGC
CATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAACTTTACGAACCTCC
CATCCTGGTTGGACA
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