mRNA_P-littoralis_Contig12.247.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.247.1
Unique NamemRNA_P-littoralis_Contig12.247.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:1101008..1101328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size321
Hectar predicted targeting categorysignal anchor
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789505.0062046-CDS-P-littoralis_Contig12:1101007..11013101680789505.0062046-CDS-P-littoralis_Contig12:1101007..1101310Pylaiella littoralis U1_48CDSP-littoralis_Contig12 1101008..1101310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789505.0195708-UTR-P-littoralis_Contig12:1101310..11013281680789505.0195708-UTR-P-littoralis_Contig12:1101310..1101328Pylaiella littoralis U1_48UTRP-littoralis_Contig12 1101311..1101328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.247.1prot_P-littoralis_Contig12.247.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 1101008..1101310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.247.1

>prot_P-littoralis_Contig12.247.1 ID=prot_P-littoralis_Contig12.247.1|Name=mRNA_P-littoralis_Contig12.247.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
DSRTHVCAVRLLNVILNIVGLVFVELVLHVFCVVFVFVSCAWRNLRHRVC
VVGRRRNINTKPRASSFWLAWRLMPDECELFASILFLVITLLNFKGADRE
*
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mRNA from alignment at P-littoralis_Contig12:1101008..1101328+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.247.1 ID=mRNA_P-littoralis_Contig12.247.1|Name=mRNA_P-littoralis_Contig12.247.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig12:1101008..1101328+ (Pylaiella littoralis U1_48)
GACAGCAGGACTCATGTATGTGCAGTTCGACTTTTAAACGTAATATTAAA
TATCGTCGGGTTGGTGTTTGTCGAGTTAGTTTTGCATGTTTTTTGTGTCG
TGTTCGTTTTTGTTTCGTGTGCGTGGCGTAACCTGAGGCATCGTGTGTGC
GTTGTTGGCCGAAGACGTAACATCAATACCAAACCGAGAGCCTCCTCCTT
TTGGTTAGCTTGGCGTTTAATGCCTGATGAATGTGAGCTTTTTGCGTCGA
TACTTTTTCTCGTGATTACATTGCTCAATTTCAAGGGTGCAGATCGAGAA
TGAAGGAGCACATGCTTTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:1101008..1101328+

>mRNA_P-littoralis_Contig12.247.1 ID=mRNA_P-littoralis_Contig12.247.1|Name=mRNA_P-littoralis_Contig12.247.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig12:1101008..1101328+ (Pylaiella littoralis U1_48)
GACAGCAGGACTCATGTATGTGCAGTTCGACTTTTAAACGTAATATTAAA
TATCGTCGGGTTGGTGTTTGTCGAGTTAGTTTTGCATGTTTTTTGTGTCG
TGTTCGTTTTTGTTTCGTGTGCGTGGCGTAACCTGAGGCATCGTGTGTGC
GTTGTTGGCCGAAGACGTAACATCAATACCAAACCGAGAGCCTCCTCCTT
TTGGTTAGCTTGGCGTTTAATGCCTGATGAATGTGAGCTTTTTGCGTCGA
TACTTTTTCTCGTGATTACATTGCTCAATTTCAAGGGTGCAGATCGAGAA
TGA
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