mRNA_P-littoralis_Contig12.245.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.245.1
Unique NamemRNA_P-littoralis_Contig12.245.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.390e-31
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    4 LGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGED 348
            L ETG  +  +REAR FR  FR+P+ FF  L+ELVR++ WFP  + DV GR+ +PVELKVLA L IL RGN F D+  MS +S  T+ ++FH+F K FA E Y  +V+LPT GED
Sbjct:  116 LRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GED 229          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.660e-28
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   16 GLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
            G+ +P SR AR FR  FR+P+ FF EL+ LV+++ WFP   +D +GRR IPV+LKVLA L IL RGN F D+  MS +S  T   +FH+F + FARE Y  H+ LPT
Sbjct:  104 GIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT 210          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.160e-28
Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = 1
Query:   19 LNEPGSREARLFRRRFRIPHQFFTELIELVREKKW--FPIRDKDVAGR---RCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQE 354
            L +P +REA+ FRRRFR+P+ FF  L++ V+  KW  F   + ++ GR   RCIPVE+KVLA L ILGRGN+F+D+++++ M E+T+ + FHKF + FAREF+   V +P   E +E
Sbjct:   75 LQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKE 191          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.210e-28
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1
Query:    1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVL 186
            MLGETGL EP SREA+LFRRRFRIP+QFFTEL+ELV++KKWFP+R KDVAGR CIPVELKV+
Sbjct:   72 MLGETGLKEPVSREAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKKDVAGRMCIPVELKVM 133          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.120e-26
Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
            ML +  L +  SR ++ FR  FR+P+ FF  L+ LV+ K WF     D AGR   PVE KVLA L ILGRGN F  + QMS MS +T+Q  FHKF K FARE Y  H++LP+
Sbjct:   66 MLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPS 177          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.190e-26
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   19 LNEPGSREARLFRRRFRIPHQFFTELIELVREKKW--FPIRDKDVAGR---RCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGE 345
            L +P +REA+ FRRRFR+P+ FF  L++ V+   W  F   + ++ GR   RCIPVE KVLA L ILGRGN+F+D+++++ M E+T+ + FHKF + FAREF+   V +P   E
Sbjct:   76 LQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDE 189          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5KL26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL26_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.290e-26
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVEL 177
            MLGETGL EP SRE +LFRRRFRIP+QFFTEL+ELV+EKKWFP+R +DVAGR CIPVEL
Sbjct:   88 MLGETGLKEPASREGKLFRRRFRIPYQFFTELVELVKEKKWFPMRKQDVAGRMCIPVEL 146          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.770e-25
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
            +L +  L +P S  A+ FR  FR+P+ FF  L+ELV++K WF    +D  GRRC PVE KVLA L ILGRGN F  +  +S MS  T+Q  FH+F + FA E Y  H+ LP+
Sbjct:   68 VLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPS 179          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.380e-25
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
            ML +  L E  SR ++ FR  FR+P  FF  L+ LV+ K WF     D AGR+  PVE KVLA L ILGRGN F  + QMS MS +T+Q  FH F K FARE Y  H++LP+
Sbjct:   66 MLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPS 177          
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.860e-24
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   28 PGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLP 333
            P SREA+ FR  FR+PH+FF   ++LVR    FP   +DVAGR+C+P+ELKVL  L +LGRGN F D+ Q+S MS  T + SFH+F   F+   +H  V LP
Sbjct:   64 PSSREAKAFRSDFRVPHEFFRHFVDLVRTV--FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLP 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE4.390e-3153.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.660e-2852.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE7.160e-2847.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGJ6_9PHAE7.210e-2882.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.120e-2650.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRQ7_9PHAE1.190e-2647.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL26_9PHAE3.290e-2681.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE3.770e-2548.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI6.380e-2550.89Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JV45_9PHAE2.860e-2450.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:1097229..1098648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0T1Y8
PFAMsPlant_tran
Model size358
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.54e-12
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789513.7008133-CDS-P-littoralis_Contig12:1097228..10974081680789513.7008133-CDS-P-littoralis_Contig12:1097228..1097408Pylaiella littoralis U1_48CDSP-littoralis_Contig12 1097229..1097408 +
1680789513.7150912-CDS-P-littoralis_Contig12:1098471..10986481680789513.7150912-CDS-P-littoralis_Contig12:1098471..1098648Pylaiella littoralis U1_48CDSP-littoralis_Contig12 1098472..1098648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.245.1prot_P-littoralis_Contig12.245.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 1097229..1098648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.245.1

>prot_P-littoralis_Contig12.245.1 ID=prot_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVA
GRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFA
REFYHSHVHLPTAGEDQEQ
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mRNA from alignment at P-littoralis_Contig12:1097229..1098648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.245.1 ID=mRNA_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-littoralis_Contig12:1097229..1098648+ (Pylaiella littoralis U1_48)
ATGCTCGGCGAGACGGGACTGAATGAGCCAGGATCGAGAGAGGCCAGACT GTTTCGCAGGCGCTTTCGTATACCACACCAGTTCTTCACGGAGCTGATCG AATTAGTGAGGGAGAAGAAGTGGTTTCCCATCCGCGACAAGGACGTGGCG GGGCGCAGGTGCATCCCAGTGGAGCTGAAGGTGACTCTCTTGCCCCATGC TATACCATACCTCCGTCTTATCCTACCGTAAAAATTATCGCAGTAGCAGC AGCAGTGACACATACTAACAGCCGTGTCCCAATATGTTCTTACTTGTTTG TACTGCTGTACCGAATACGCATCCACACTATTGGTACATATCATATCATG TATGTGATGAAGATACACTGCTGTTCTTCGAGTATACCGTACCTGGTATC AATTAACGTATGATATGTACTTCTGGACAGCAGTTAATTTGCACAGCAGT ACTGTAATGTCCTGTTGTTTCCTCTACAAAAGGAGCAAACATACAGTACT GTAATGTCCTGTTGTTTCCTCTACAAAAGGAGCAAACATACAGCAGTAGT TGGTTCTGTGATGAGTGTGTGGCAGATAAACTCCGAGTACAAATAATGTG ATCCATGATTGCCCTAAGTTATCGAACCGCGTTCGAGCACGAGCTCTACC TTGCAGCAGCCTATTTTATCGCGAGTCCACCATTGGGCAACTATTTTATC GCGAGTCCACCAGAGGGCACCGAGTTTGGTGTTTCTGTGGGAAAATGGAG CCCCTGCGTTTCTCGCTCGCGGCGAGGCGGCAACTCGCCATCCATATGTC GCTCGTCAAGATGTAAAGCAGTAGTCAAACGATGGTGTACTCTCACTGCA TGGCGAATGCATGAAACACAAGGTCAGGTTCCTTCTGTGTTTCGGCTGCC GGTGCTGCTGCGCTCCGCATTCATATTTTGGCATATTGAATCAACAAGAC TTTAACTTTGTACATCAACGGCAAAACGTGCACTCCACAATAGCTGAATG TCCCCCGAAACATATGTGATAATCCCGTGATTCGGCGAGTCGATGCGGCA CATACGCCTCGTTTAGGTGCGAAACCAGCTGTAATAACCAGCGAAGCAGG AGACGGCAAATCAAAATGTTCGTCTCATGCCAGTGTTGTACATCCCGACA TTTCAAAAGTGATTTTCCCGTAAAAAATTATGTTCCTCTCACCGGACCGC GACTCGTCATGTTTTGTTTTCTGTTGTTGATTTCGGCTTCCAGGTCCTGG CATCGCTGCACATTCTCGGGAGGGGCAACTTCTTCGAGGACATGACCCAG ATGTCTCACATGAGCGAGTCGACGATACAGAACTCCTTCCACAAGTTCAA CAAGCTCTTCGCGAGAGAGTTCTACCACAGCCACGTGCATCTGCCCACCG CCGGAGAGGACCAAGAACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:1097229..1098648+

>mRNA_P-littoralis_Contig12.245.1 ID=mRNA_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig12:1097229..1098648+ (Pylaiella littoralis U1_48)
ATGCTCGGCGAGACGGGACTGAATGAGCCAGGATCGAGAGAGGCCAGACT
GTTTCGCAGGCGCTTTCGTATACCACACCAGTTCTTCACGGAGCTGATCG
AATTAGTGAGGGAGAAGAAGTGGTTTCCCATCCGCGACAAGGACGTGGCG
GGGCGCAGGTGCATCCCAGTGGAGCTGAAGGTCCTGGCATCGCTGCACAT
TCTCGGGAGGGGCAACTTCTTCGAGGACATGACCCAGATGTCTCACATGA
GCGAGTCGACGATACAGAACTCCTTCCACAAGTTCAACAAGCTCTTCGCG
AGAGAGTTCTACCACAGCCACGTGCATCTGCCCACCGCCGGAGAGGACCA
AGAACAG
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