mRNA_P-littoralis_Contig12.245.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 124 bits (311), Expect = 4.390e-31 Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 4 LGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGED 348
L ETG + +REAR FR FR+P+ FF L+ELVR++ WFP + DV GR+ +PVELKVLA L IL RGN F D+ MS +S T+ ++FH+F K FA E Y +V+LPT GED
Sbjct: 116 LRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GED 229
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.660e-28 Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 16 GLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
G+ +P SR AR FR FR+P+ FF EL+ LV+++ WFP +D +GRR IPV+LKVLA L IL RGN F D+ MS +S T +FH+F + FARE Y H+ LPT
Sbjct: 104 GIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT 210
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE) HSP 1 Score: 110 bits (275), Expect = 7.160e-28 Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 19 LNEPGSREARLFRRRFRIPHQFFTELIELVREKKW--FPIRDKDVAGR---RCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQE 354
L +P +REA+ FRRRFR+P+ FF L++ V+ KW F + ++ GR RCIPVE+KVLA L ILGRGN+F+D+++++ M E+T+ + FHKF + FAREF+ V +P E +E
Sbjct: 75 LQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKE 191
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE) HSP 1 Score: 108 bits (269), Expect = 7.210e-28 Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1
Query: 1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVL 186
MLGETGL EP SREA+LFRRRFRIP+QFFTEL+ELV++KKWFP+R KDVAGR CIPVELKV+
Sbjct: 72 MLGETGLKEPVSREAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKKDVAGRMCIPVELKVM 133
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.120e-26 Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
ML + L + SR ++ FR FR+P+ FF L+ LV+ K WF D AGR PVE KVLA L ILGRGN F + QMS MS +T+Q FHKF K FARE Y H++LP+
Sbjct: 66 MLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPS 177
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.190e-26 Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 19 LNEPGSREARLFRRRFRIPHQFFTELIELVREKKW--FPIRDKDVAGR---RCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGE 345
L +P +REA+ FRRRFR+P+ FF L++ V+ W F + ++ GR RCIPVE KVLA L ILGRGN+F+D+++++ M E+T+ + FHKF + FAREF+ V +P E
Sbjct: 76 LQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDE 189
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5KL26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL26_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.290e-26 Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1
Query: 1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVEL 177
MLGETGL EP SRE +LFRRRFRIP+QFFTEL+ELV+EKKWFP+R +DVAGR CIPVEL
Sbjct: 88 MLGETGLKEPASREGKLFRRRFRIPYQFFTELVELVKEKKWFPMRKQDVAGRMCIPVEL 146
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.770e-25 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
+L + L +P S A+ FR FR+P+ FF L+ELV++K WF +D GRRC PVE KVLA L ILGRGN F + +S MS T+Q FH+F + FA E Y H+ LP+
Sbjct: 68 VLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPS 179
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 106 bits (265), Expect = 6.380e-25 Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPT 336
ML + L E SR ++ FR FR+P FF L+ LV+ K WF D AGR+ PVE KVLA L ILGRGN F + QMS MS +T+Q FH F K FARE Y H++LP+
Sbjct: 66 MLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPS 177
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.860e-24 Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 28 PGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAGRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLP 333
P SREA+ FR FR+PH+FF ++LVR FP +DVAGR+C+P+ELKVL L +LGRGN F D+ Q+S MS T + SFH+F F+ +H V LP
Sbjct: 64 PSSREAKAFRSDFRVPHEFFRHFVDLVRTV--FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLP 163 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig12.245.1 >prot_P-littoralis_Contig12.245.1 ID=prot_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp MLGETGLNEPGSREARLFRRRFRIPHQFFTELIELVREKKWFPIRDKDVAback to top mRNA from alignment at P-littoralis_Contig12:1097229..1098648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig12.245.1 ID=mRNA_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-littoralis_Contig12:1097229..1098648+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig12:1097229..1098648+ >mRNA_P-littoralis_Contig12.245.1 ID=mRNA_P-littoralis_Contig12.245.1|Name=mRNA_P-littoralis_Contig12.245.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig12:1097229..1098648+ (Pylaiella littoralis U1_48)back to top |