mRNA_P-littoralis_Contig12.208.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.208.1
Unique NamemRNA_P-littoralis_Contig12.208.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.208.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.970e-9
Identity = 37/90 (41.11%), Postives = 46/90 (51.11%), Query Frame = 2 
Query:    2 EHLCRWLGL-LDYGPKGARSSQ---EAGGGCRRYSLSRAQRGLPLRW-EYVSVATWIYKMEPDESLQGRAIPYRCSLVETPTLRWTNLPP 256
            EHLCRWL + LD+GP      Q   E  G      LS   +  P RW EYV++ATW ++M+PDESL G   PY+      P      L P
Sbjct: 1297 EHLCRWLKVSLDFGPANHPRGQGTVERMGAVLAQLLSELCQAWPQRWDEYVAIATWAHRMQPDESLPGNVSPYQMLFGRAPRTPLDQLSP 1386
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNP4_9PHAE9.970e-941.11Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:839721..840170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.9621837-UTR-P-littoralis_Contig12:839720..8398461680789504.9621837-UTR-P-littoralis_Contig12:839720..839846Pylaiella littoralis U1_48UTRP-littoralis_Contig12 839721..839846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.9722428-CDS-P-littoralis_Contig12:839846..8401701680789504.9722428-CDS-P-littoralis_Contig12:839846..840170Pylaiella littoralis U1_48CDSP-littoralis_Contig12 839847..840170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.208.1prot_P-littoralis_Contig12.208.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 839847..840170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.208.1

>prot_P-littoralis_Contig12.208.1 ID=prot_P-littoralis_Contig12.208.1|Name=mRNA_P-littoralis_Contig12.208.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MGVCFCGYLDLQNGTRRESSRKGDTVQMLFGRDAHTPLDELAPALDDTDF
GQGLERTPHGSPRSCRARLRRHPPDQYVHRATRSFCFDNMSPSSRIALLG
CKSLLQKG
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mRNA from alignment at P-littoralis_Contig12:839721..840170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.208.1 ID=mRNA_P-littoralis_Contig12.208.1|Name=mRNA_P-littoralis_Contig12.208.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig12:839721..840170+ (Pylaiella littoralis U1_48)
GGAACACCTGTGCAGATGGCTAGGTTTGCTAGACTATGGACCCAAGGGCG
CAAGGAGCAGTCAAGAGGCTGGAGGTGGCTGCAGGAGATACTCGCTGAGT
CGTGCACAGCGTGGCCTCCCTCTTAGATGGGAGTATGTTTCTGTGGCTAC
CTGGATCTACAAAATGGAACCCGACGAGAGTCTTCAAGGAAGGGCGATAC
CGTACAGATGCTCTTTGGTCGAGACGCCCACACTCCGCTGGACGAACTTG
CCCCCGCCTTGGATGACACCGACTTTGGTCAGGGGTTAGAGAGAACGCCT
CATGGGTCCCCGCGGTCGTGCCGCGCACGTTTGAGACGTCATCCACCCGA
CCAGTATGTACATCGGGCAACCCGAAGCTTTTGTTTCGACAATATGTCGC
CTTCATCACGAATAGCTCTTTTGGGGTGCAAGTCACTTCTCCAAAAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:839721..840170+

>mRNA_P-littoralis_Contig12.208.1 ID=mRNA_P-littoralis_Contig12.208.1|Name=mRNA_P-littoralis_Contig12.208.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig12:839721..840170+ (Pylaiella littoralis U1_48)
ATGGGAGTATGTTTCTGTGGCTACCTGGATCTACAAAATGGAACCCGACG
AGAGTCTTCAAGGAAGGGCGATACCGTACAGATGCTCTTTGGTCGAGACG
CCCACACTCCGCTGGACGAACTTGCCCCCGCCTTGGATGACACCGACTTT
GGTCAGGGGTTAGAGAGAACGCCTCATGGGTCCCCGCGGTCGTGCCGCGC
ACGTTTGAGACGTCATCCACCCGACCAGTATGTACATCGGGCAACCCGAA
GCTTTTGTTTCGACAATATGTCGCCTTCATCACGAATAGCTCTTTTGGGG
TGCAAGTCACTTCTCCAAAAGGGT
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