mRNA_P-littoralis_Contig12.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.2.1
Unique NamemRNA_P-littoralis_Contig12.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.530e-19
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:  160 IRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVRRK 336
            ++LLKD+ V  +EPRV+SHLVDRMR+YT EV  DARDYADHAGR D+GM+DVRLAVR+K
Sbjct:    1 MQLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKK 59
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A1Y2CIS2_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CIS2_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.690e-5
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  196 EPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVRRK 336
            +P+VL  L+D + +YTL+V  DA+ +A+HAGR ++ ++DVRLAV  K
Sbjct:   42 QPQVLPQLLDFVHRYTLDVVGDAQLFAEHAGRSEVDVDDVRLAVEGK 88
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: UPI001BB137B9 (transcription initiation factor TFIID subunit 9-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB137B9)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-5
Identity = 24/63 (38.10%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  142 RDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            RD + +  +LKD  V  +EPRV++ +++   +Y  +V  D++ Y+ HAGR DI +ED++LA++
Sbjct:   10 RDAEIMTAILKDMGVTDYEPRVINQMLEFAYRYVTDVLDDSQVYSGHAGRRDIDVEDIKLAIQ 72
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A8H7PEA1_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PEA1_MORIS)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-5
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  133 QDERDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            Q  RD K +  LL+   V   +P+V+  L++   +YT +V QDA  YA+HAGR DI + DV+LAV+
Sbjct:   14 QQPRDAKIISLLLQSHGVHDFDPKVVHQLLEFAHRYTSDVFQDALVYAEHAGRQDIDLADVQLAVQ 79
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A7M7NJ43_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NJ43_STRPU)

HSP 1 Score: 51.2 bits (121), Expect = 2.870e-5
Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  142 RDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            RD + +  +LKD  V  +EPRV++ +++   +Y   V  DA+ Y  HAGR D+ +ED++LA++
Sbjct:    9 RDAEIMTAILKDMGVTDYEPRVINQMLEFAYRYVTHVLDDAQVYGGHAGRRDVDVEDIKLAIQ 71
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A197JZG0_9FUNG (TFIID-31kDa-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZG0_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 3.260e-5
Identity = 26/67 (38.81%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  130 AQDERDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            A   RD K +  +L+   V   + +V+  L++   +YT +V QDA  Y++HAGR D+G++DVRLA++
Sbjct:    4 APQPRDAKVISLILQSLAVEDADQKVIHQLLEFAHRYTTDVFQDALLYSEHAGRTDVGLDDVRLAIQ 70
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A1S3KFZ4_LINUN (transcription initiation factor TFIID subunit 9B n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KFZ4_LINUN)

HSP 1 Score: 50.8 bits (120), Expect = 3.840e-5
Identity = 25/65 (38.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  142 RDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVRRK 336
            +D + +  +LKD  V  +EPRV++ +++   +Y  +V  DA+ YA+HAG+ +I  EDV+LA++ K
Sbjct:   10 KDAQVMASILKDMGVTDYEPRVINQMLEFTYRYVTDVLDDAKVYANHAGKKNIDTEDVKLAIQCK 74
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A6F9DTP7_9ASCI (Transcription initiation factor TFIID subunit 9B-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DTP7_9ASCI)

HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5
Identity = 23/70 (32.86%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  121 TKAAQDERDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            T  A   +D  +++ +LKD  V  +EP+V+  +++   +Y  EV  DA+ +A+HAGR  + ++D +LA++
Sbjct:   15 TMLANMPKDAHTIVAMLKDMGVTDYEPKVIHQMLELTYRYVSEVLDDAKTFANHAGRSTVTLDDTKLAIK 84
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A7J7A2V1_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7A2V1_9COLE)

HSP 1 Score: 50.8 bits (120), Expect = 5.780e-5
Identity = 22/61 (36.07%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  145 DEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAV 327
            +++ +I++L ++ +  +EP+V+ HL D M  Y +E+   A  Y  HAGR +I + DV+LA+
Sbjct:  389 NKQDIIKMLIEANIDCYEPQVVDHLTDYMNNYMVEILNSANAYKTHAGRNNIDISDVKLAI 449
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BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Match: A0A1Y2GSY7_9FUNG (Transcription initiation factor IID, 31kD subunit-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GSY7_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 6.700e-5
Identity = 25/63 (39.68%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  142 RDEKSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDIGMEDVRLAVR 330
            RD K +  +L+   V   E +V+  L++   +YT +V QDA  Y++HAGR ++G+EDV+LA++
Sbjct:    8 RDAKVISLILQSLSVEDTEQKVIHQLLEFAHRYTTDVFQDALLYSEHAGRTEVGLEDVKLAIQ 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI1.530e-1972.88Transcription initiation factor TFIID subunit n=2 ... [more]
A0A1Y2CIS2_9FUNG1.690e-548.94Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
UPI001BB137B92.030e-538.10transcription initiation factor TFIID subunit 9-li... [more]
A0A8H7PEA1_MORIS2.310e-543.94Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A7M7NJ43_STRPU2.870e-538.10Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A197JZG0_9FUNG3.260e-538.81TFIID-31kDa-domain-containing protein n=1 Tax=Linn... [more]
A0A1S3KFZ4_LINUN3.840e-538.46transcription initiation factor TFIID subunit 9B n... [more]
A0A6F9DTP7_9ASCI4.040e-532.86Transcription initiation factor TFIID subunit 9B-l... [more]
A0A7J7A2V1_9COLE5.780e-536.07Uncharacterized protein n=1 Tax=Abscondita termina... [more]
A0A1Y2GSY7_9FUNG6.700e-539.68Transcription initiation factor IID, 31kD subunit-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:6387..8251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAZ7
Preferred nameTAF9
PFAMsTFIID-31kDa
Model size338
Max annot lvl2759|Eukaryota
KEGG koko:K02868,ko:K03133,ko:K05030,ko:K14535
KEGG TC1.A.13.1
KEGG Pathwayko03010,ko03022,ko04924,ko04972,ko05168,map03010,map03022,map04924,map04972,map05168
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
Exons3
Evalue2.51e-20
EggNOG OGsCOG5094@1|root,KOG3334@2759|Eukaryota
DescriptionRNA polymerase II transcriptional preinitiation complex assembly
Cds size336
COG categoryK
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021,ko03036,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789505.0456157-CDS-P-littoralis_Contig12:6386..65511680789505.0456157-CDS-P-littoralis_Contig12:6386..6551Pylaiella littoralis U1_48CDSP-littoralis_Contig12 6387..6551 +
1680789505.0564847-CDS-P-littoralis_Contig12:7226..72961680789505.0564847-CDS-P-littoralis_Contig12:7226..7296Pylaiella littoralis U1_48CDSP-littoralis_Contig12 7227..7296 +
1680789505.068006-CDS-P-littoralis_Contig12:8148..82491680789505.068006-CDS-P-littoralis_Contig12:8148..8249Pylaiella littoralis U1_48CDSP-littoralis_Contig12 8149..8249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.2.1prot_P-littoralis_Contig12.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 6387..8249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.2.1

>prot_P-littoralis_Contig12.2.1 ID=prot_P-littoralis_Contig12.2.1|Name=mRNA_P-littoralis_Contig12.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
QHKTHVEHVSLGSTRRERSMTSKPKKTLLSGDSLYAAEARTKAAQDERDE
KSVIRLLKDSRVALHEPRVLSHLVDRMRKYTLEVAQDARDYADHAGRLDI
GMEDVRLAVRRK
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mRNA from alignment at P-littoralis_Contig12:6387..8251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.2.1 ID=mRNA_P-littoralis_Contig12.2.1|Name=mRNA_P-littoralis_Contig12.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1865bp|location=Sequence derived from alignment at P-littoralis_Contig12:6387..8251+ (Pylaiella littoralis U1_48)
CAACACAAGACACACGTGGAGCACGTCTCACTCGGTAGCACTAGACGCGA
AAGGTCCATGACATCCAAACCAAAGAAGACCTTGCTTTCAGGAGACTCTC
TTTATGCGGCAGAGGCCCGAACGAAGGCAGCTCAAGACGAGCGGGATGAA
AAGTCGGTCATCAGGGTACGTTTTTTTTGTGTTTTGTATCTCGCCGCGAT
TTCACCCCCCCGCGAGATGTAAAGGATGACTCCTCTGTACTTGTATACAC
CAGCAGCAGTCCGCCCACATGCACACAATAATTTATTGGCAGATAGCTTG
AGCTCCAGGATCGTTCGTGTTGGTGCGTTTGTCTACGTATTTGGAACTGC
ACGCTGGACTCCGTTCTGTTGCTACCCTGCGTTGTGTCGTAGATATCTGG
TGTGATCCTACCACAGCTTGCGTCTTACAAGTATACAGTCGAGTACTCGT
ACAGAGTCGTAGAAGACGTGCAAGTTCACCCCCCAGGGCCATGTCACCTT
TGACCCATCCATCATCCATCAAACTCGAGTATCGCTTGTTTTGCTCCGGG
CGTTATACGAATAAACTGCTGTTTGCACAGACCCTGCGTCTCAAAAAATA
CTCCGGAGTACGAAGTACTTCGTTAGTATTTAACCCCGCCAGTTCCTCTC
TTTCCTTCTCTACGACCAGTACAGTACTATCAAGGGCCTGACGCCTGACG
CTCTCTCGCCTCTGGCTGGCTGCTGCAGGCTTCACTTGATCGTTCTCTCT
CTCTCCCTCTCTCAACTCTCTCCTTTCCTCTCCCCTTTCACCCCTGTGTC
TCTATGGTGTTCGACCTCGTTTCACTCCCGGATGTGACAGCTTCTCAAGG
ATTCAAGGGTGGCCTTGCACGAGCCGAGGGTGTTGAGCCATCTGGTAGAC
CGTATGCGAAGTGAGTTCTGCTGTGGTGCATTAGTCCTCGTACAATACAT
CCATTTGACAAGACAAGATTTATCTCAGTTCAGTTGAGCTCGGTGTGGGC
ATATACTTGTCATGTAGAGCGATTTTCGACTCGAATCTTGTTTTTTTGCC
GTGGAGCTTCAACACACAAGAGACCTCGCGCCTGGCCAGCGTCCTAGCCG
AGAACAATTCTTAGGTAGCTGTCATAGGATCAAAGGAAAAACTCCGGTGT
TGACTTTCTTCCTGTCTGTCGTGACCCCGGCCGGTGCGCCCAAATTATAC
CGAAACGTGTAGACTGCCGTCCAGAATGAATGAGATGGCATACACACACG
CACACGCATTTGGGACCGATACTGATGAGATGAAAAATCCTCAACCCACC
GCTTGGGCATGACCAGCCCAAGGAATGTTGCACGTAAACTCGTCCTGCAG
TCGTGTGGGTACAACACAGCAAAGTGCTATTTTAGACTCATGCTGCCGCT
TGCCGTACAGCGGCAAAACGCCTTTCCCGAGCATCGACCCAAAACATTTC
ATCTGGCGTATCGATGTATCGTGTGCTTGTGCAAACTCAGCCAGTCGTTC
AGACGTCTGTTGAACTTTTCCTTGGGTGTACCAACGGAAGTTGTGGATGG
GTACTTGTATTAAATGTTTGGGCGCCGAGTTTCTCCCCGACCATTGGCTC
TCAAAATCATCTACAATCTGACGATGCTGCTTGTTGTGGCGGCGCTCTTG
GTTGGTGTTATCGATGTTCGAGCTGCGACACCGCTTTATTGCTATTGCTG
TCGGGTTTTTTCCGCTTCTCCTGTGCACCCCTCCGCGAAACGAACACTCC
GTTGTTCGGTAGAATATACACTCGAGGTGGCGCAGGATGCGAGGGACTAC
GCGGACCACGCGGGCAGGCTCGATATCGGCATGGAAGACGTGCGATTAGC
CGTGCGCAGGAAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:6387..8251+

>mRNA_P-littoralis_Contig12.2.1 ID=mRNA_P-littoralis_Contig12.2.1|Name=mRNA_P-littoralis_Contig12.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig12:6387..8251+ (Pylaiella littoralis U1_48)
CAACACAAGACACACGTGGAGCACGTCTCACTCGGTAGCACTAGACGCGA
AAGGTCCATGACATCCAAACCAAAGAAGACCTTGCTTTCAGGAGACTCTC
TTTATGCGGCAGAGGCCCGAACGAAGGCAGCTCAAGACGAGCGGGATGAA
AAGTCGGTCATCAGGCTTCTCAAGGATTCAAGGGTGGCCTTGCACGAGCC
GAGGGTGTTGAGCCATCTGGTAGACCGTATGCGAAAATATACACTCGAGG
TGGCGCAGGATGCGAGGGACTACGCGGACCACGCGGGCAGGCTCGATATC
GGCATGGAAGACGTGCGATTAGCCGTGCGCAGGAAG
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