mRNA_P-littoralis_Contig12.198.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.198.1
Unique NamemRNA_P-littoralis_Contig12.198.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.198.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.130e-15
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   82 NELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLIVACW 267
            N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W
Sbjct:  102 NDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARW 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.130e-1559.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:797852..798642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size272
Hectar predicted targeting categorymitochondrion
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.3833501-UTR-P-littoralis_Contig12:797851..7978701680789504.3833501-UTR-P-littoralis_Contig12:797851..797870Pylaiella littoralis U1_48UTRP-littoralis_Contig12 797852..797870 -
1680789504.4097912-UTR-P-littoralis_Contig12:798593..7986421680789504.4097912-UTR-P-littoralis_Contig12:798593..798642Pylaiella littoralis U1_48UTRP-littoralis_Contig12 798594..798642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.3924642-CDS-P-littoralis_Contig12:797870..7980571680789504.3924642-CDS-P-littoralis_Contig12:797870..798057Pylaiella littoralis U1_48CDSP-littoralis_Contig12 797871..798057 -
1680789504.4015126-CDS-P-littoralis_Contig12:798576..7985931680789504.4015126-CDS-P-littoralis_Contig12:798576..798593Pylaiella littoralis U1_48CDSP-littoralis_Contig12 798577..798593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.198.1prot_P-littoralis_Contig12.198.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 797871..798593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.198.1

>prot_P-littoralis_Contig12.198.1 ID=prot_P-littoralis_Contig12.198.1|Name=mRNA_P-littoralis_Contig12.198.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MLKPGRMLARSTSWPRTLRTISRTVFAGTQIVPCRWCLREGTPSSTGVST
GSVHFGRRSKVFLLQRT*
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mRNA from alignment at P-littoralis_Contig12:797852..798642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.198.1 ID=mRNA_P-littoralis_Contig12.198.1|Name=mRNA_P-littoralis_Contig12.198.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=791bp|location=Sequence derived from alignment at P-littoralis_Contig12:797852..798642- (Pylaiella littoralis U1_48)
CAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTA
TGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGGTGACAAAAAAAC
GGCGTGTTCTTTTTTTCCTTCTTGCGTTATCTATGAACCATCGCTTTTCT
CTCTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACTCGCCTGACGAG
TGTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAATTCTGATTGGA
GCAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAGCATGC
AGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATG
CGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGC
CTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGA
CCTCGCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAACCA
TCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCTTTTATCTTTT
GTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCAAGGTC
AACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGG
GGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCT
TCAACGGGCGTCTCGACTGGCTCGGTACACTTTGGGCGGAGGTCAAAGGT
CTTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:797852..798642-

>mRNA_P-littoralis_Contig12.198.1 ID=mRNA_P-littoralis_Contig12.198.1|Name=mRNA_P-littoralis_Contig12.198.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig12:797852..798642- (Pylaiella littoralis U1_48)
ATGTTGAAGCCTGGGAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAAC
ATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGT
GTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACT
GGCTCGGTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCAC
TTGA
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