mRNA_P-littoralis_Contig12.196.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.196.1
Unique NamemRNA_P-littoralis_Contig12.196.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:796974..797727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size419
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.3470452-CDS-P-littoralis_Contig12:796973..7973101680789504.3470452-CDS-P-littoralis_Contig12:796973..797310Pylaiella littoralis U1_48CDSP-littoralis_Contig12 796974..797310 -
1680789504.3553317-CDS-P-littoralis_Contig12:797647..7977271680789504.3553317-CDS-P-littoralis_Contig12:797647..797727Pylaiella littoralis U1_48CDSP-littoralis_Contig12 797648..797727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.196.1prot_P-littoralis_Contig12.196.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 796974..797727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.196.1

>prot_P-littoralis_Contig12.196.1 ID=prot_P-littoralis_Contig12.196.1|Name=mRNA_P-littoralis_Contig12.196.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
CWRQGSRQRGRRLYCTTYAASSITWRRSCTTSSWKSRKMPSPSSSSTRVK
NIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGGGVVVRTWVR
ATPRQVVVRWPLPVVIRRGRKNLWRRGGNTTIFYPDRL*
back to top

mRNA from alignment at P-littoralis_Contig12:796974..797727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.196.1 ID=mRNA_P-littoralis_Contig12.196.1|Name=mRNA_P-littoralis_Contig12.196.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=754bp|location=Sequence derived from alignment at P-littoralis_Contig12:796974..797727- (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGTTCA
ATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAAT
CTCCATTCCGCAGCCGTAGTTGATTAAGACATAAACTCCATCCTCCCTCG
GTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCT
GATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAG
ACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAG
CTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCCGT
CCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCAGAAA
AATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTTGC
AAATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGAC
TCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGG
TCGTGGCGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGAC
AGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAG
AATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCGATT
GTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig12:796974..797727-

>mRNA_P-littoralis_Contig12.196.1 ID=mRNA_P-littoralis_Contig12.196.1|Name=mRNA_P-littoralis_Contig12.196.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig12:796974..797727- (Pylaiella littoralis U1_48)
TGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACTAC
CTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAACTTCTTCGT
GGAAGAGCAGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAA
AATATCTGGTTGCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGG
GTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCG
GGCTAGCAGGGGGTCGTGGCGGGGGCGTGGTGGTGAGAACCTGGGTGAGA
GCAACACCTCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCG
ACGAGGGCGGAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCT
ATCCCGACCGATTGTAA
back to top