mRNA_P-littoralis_Contig12.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.11.1
Unique NamemRNA_P-littoralis_Contig12.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:22259..25614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1038
Hectar predicted targeting categoryother localisation
Exons5
Cds size813
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.11.1prot_P-littoralis_Contig12.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 22259..24976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789505.09696-CDS-P-littoralis_Contig12:22258..225461680789505.09696-CDS-P-littoralis_Contig12:22258..22546Pylaiella littoralis U1_48CDSP-littoralis_Contig12 22259..22546 -
1680789505.1085486-CDS-P-littoralis_Contig12:23032..232901680789505.1085486-CDS-P-littoralis_Contig12:23032..23290Pylaiella littoralis U1_48CDSP-littoralis_Contig12 23033..23290 -
1680789505.1191552-CDS-P-littoralis_Contig12:23536..237771680789505.1191552-CDS-P-littoralis_Contig12:23536..23777Pylaiella littoralis U1_48CDSP-littoralis_Contig12 23537..23777 -
1680789505.1296716-CDS-P-littoralis_Contig12:24950..249761680789505.1296716-CDS-P-littoralis_Contig12:24950..24976Pylaiella littoralis U1_48CDSP-littoralis_Contig12 24951..24976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789505.1395607-UTR-P-littoralis_Contig12:24976..251351680789505.1395607-UTR-P-littoralis_Contig12:24976..25135Pylaiella littoralis U1_48UTRP-littoralis_Contig12 24977..25135 -
1680789505.1483984-UTR-P-littoralis_Contig12:25550..256141680789505.1483984-UTR-P-littoralis_Contig12:25550..25614Pylaiella littoralis U1_48UTRP-littoralis_Contig12 25551..25614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.11.1

>prot_P-littoralis_Contig12.11.1 ID=prot_P-littoralis_Contig12.11.1|Name=mRNA_P-littoralis_Contig12.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
MATKIGDLRARLKTEQAAARTTTAAGAATAAGNAADADGPAGKPKEIHAD
EAATTAGRSAGMVELGGRGTAPAAAAAAGMKSGREHHAKQETMVLVEKGE
LRQRKERAITCVKPWVKRSLKLGVPGDGNCYPASWMLVAVLWSVHEREAL
ASLVTNLEECSKPEGVFTSVPPDLMQYVNEFVEFVVDLSRQWPESEASSH
GFELAVRIVKMLAELSSPPAGAQAAAETEDEPRWLKIKWGMALAGRAIDL
SWACRLSVPEKDKVRRQKQIG
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mRNA from alignment at P-littoralis_Contig12:22259..25614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.11.1 ID=mRNA_P-littoralis_Contig12.11.1|Name=mRNA_P-littoralis_Contig12.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3356bp|location=Sequence derived from alignment at P-littoralis_Contig12:22259..25614- (Pylaiella littoralis U1_48)
CGGCGGACCGTCGCCGTGAGGAGCAGAACTCCTGGTCTAAAGAGAGGAAT
GCTCTGCGGTATGTGTCGCTTGTCTACCGCGATATCTGGTACAGTACCTG
CTGCTTTATTGTCGCGGATGAGCGGGGGTGTTCGTTGTTGTTGATGTGTT
CGGGGGTGTTCGTTGTTGTTGATGTGTTCGGGTGTGCTTGTGATTGTCAT
TTCCAATGTTTTTTCTGGTGCCATGCTTTATTGTTGGTTCACCTCCGTCA
CCGTTGTACTTTATACTGTGCGGGCACGCAATATTGTCACCGACTCCGCC
CGAAGCCTTACTCTTTTTCGTGCTTCGTGAAAGCAAGACACGGGCATAAT
TGCGCTATGTTGCCGATAGCACCAACCAGTGCCAATGTGTTGATACACGA
AGCGCGAATTCATTTTCTTGAGGTCTTCGTCGTAGACTTAAACTGGTTAT
GTTTGGCAAACAGGAACGAGGTTCGGGAGGTTCGGGCGGTGCAGAGTGCT
GCTGCGGAGAAGGTCAGCCGCCTCCGGGAGAGAATCGGCTCACTGAAGAC
AGAGGTGGAGAGTGTTTCGGATGGCCTAAGAAAGGAGCAGAGAGCGACGG
CGGCGGCGGAGAAACAGTGGACGTCGGAGAGGACGTCGATGGCCACGAAG
ATAGGAGACCTCCGGTGCGCCAGCTGCTACCTCTTGTTTGATGAACATAG
TCGCAGTTGAGCAGGCGTTTTCGTCTTTTTATACTCTTGCTTGTTTTGAA
ATACAAAGAGAAGACGAGGCTGCCCAAGCGCAGTTTTCTTTTCTTGAGGT
CTTCCTCGTGGGCTTAAACTGATAATGTTTGGCAAACAGGAACGAGGTTC
AGGCGGTGCGAAGTGGTGCTGCGGAGAAGGCCAGCCGCCTCCGGGAGAGA
ATCGGCTCACTGGAGACAGAGGTGGAGCGTGTTTGGAATGGTCGTAGAAA
GGAGCAAGAAGCGGCGATGGCGGCGGCGGAGAAACAGTGGACGTCGGAGA
GGATGTCGATGGGTAGCAAGATACGAGACCTCCGGTGCGCCAGCTGCTAC
CTCTTGTTTGATGAACATAGTCGCAGCTCAGCAGGCGTTTTCGTTTTTTA
GACTCTTGCTTGTTTTGAAATACAAATATTTGTGTATAGTTTGTATTTCA
AAACAAGCAAGAGTATGAAAGAACAAAAACGCCTGCTGAGCTGCGACTAT
GTTCATCAAACAAGAGGTAGCAGCTGGCGCACCGGAGGTCTCGTATCTTC
GTGGCCATCGACGTCCTCTCCGACGTCCACTGTTTCTCCGCCGCCGCCGT
CGCTCTCTGCTCCTTTCTTAGGCCATCCGAAACACGCTCCACCTCTATCT
TCAGTGAGCCGATTCCCTCCCGGAGGCGGCTGGCCTTCTCCGCAGCATCA
CTTTGCACCGCCCGAACCTCGTTCCTGTTTGCCAAACATTATCAGTTTAA
GCCCACGAGGAAGACCTCAAGAAAAGAAAACTGCGCTTGGGCAGCCTCGT
CTCAAGACGAGGCTGCTCACGCGATCCCTCCCTGTCGAAACGCGACTTGC
GTGTACCTGTTGCTGCGTGCAGTCTAGCCCAACGAGTTTTGACCCACCTT
TCCCATTGCGACTTTTCTGAGAGCACTGAACCACCATTCCTGGATCGAAG
ATACAGAGAGGGTCGATTTTTTATCTATTTTCTGTCATCAAGGTGTTGCA
ATACCACCCCGGAGCTCTCGATTGTTTCCCCATACGTTTCCAGTTACATG
CCATCTACCTGCCCTGTGCCACACCTTGAATGGATAAAATATTTGGTGCT
TACGCCGTCGCTGTTTCCTTCACAAAACAAACTACAGTGCCCGGCTGAAG
ACAGAACAAGCCGCAGCCAGAACCACAACCGCAGCTGGAGCCGCCACCGC
CGCCGGCAATGCCGCAGATGCCGACGGACCCGCTGGCAAACCGAAGGAGA
TCCATGCGGACGAGGCAGCAACAACGGCGGGACGAAGCGCCGGGATGGTG
GAGCTCGGGGGCAGGGGAACAGCACCGGCAGCAGCAGCGGCGGCTGGGAT
GAAGTCGGGACGGGAGCACCACGCGAAGGTGAAGACGAATGCTGTTTTTC
TCGGCCGAGCGGGCACAACCCCGTCACCGTGGCCGTTTCTTCCATTAGTG
GTATTGACGCACAAAACCCAGCCGCAGGATGACGTGTGCCAGCCATCCCA
CGAGGACGATGCGGTTTGTTCAAAGATGCAGAAAGAGTTCGGGCTGAAAA
GCGGCGACCGCCCAGCGAAAAATACGGCGTGCATGGTTTTTGGCATATTC
GTGTCCATCGTTAAAATATACCAGCAGGAAACGATGGTGCTGGTCGAGAA
GGGGGAGTTGCGGCAGCGAAAGGAGCGTGCCATCACATGTGTCAAGCCAT
GGGTTAAGCGCTCGCTTAAGCTGGGCGTTCCAGGAGATGGCAACTGCTAT
CCAGCCTCCTGGATGCTGGTAGCTGTATTGTGGAGCGTCCACGAGCGAGA
AGCCTTGGCGTCGTTGGTGACGAATCTGGAGGAATGCTCAAAGCCGGAGG
GAGTCTTCACCAGCGTCCCTCCTGACCTCATGGTATTGCTTATTCTTCAC
CTCGTATTGATTTGTTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTGTT
TGGATTTTGATGCCGGTGCGACGTCACACCGGTCGTGTTGTACGTGCCCT
GCTATAGTTTGAACAAAAAACGAGAATCCTCAAGACGTTGTGGGTCCTGC
TATCACGGCGGGAGCTTGGAAATAGGTCTAGTGCTCTTGATGATGCCGCA
GGGAGATACGGAGAAAACCAAGATAGAGGTCAGGCCGGAAAGGGGAGGGG
GGGTCAACCATTCTTCGTGTCCAGTCAAAACGACAAAGTTGCCATTGCAT
TGCCGTTGTTGGCAGCAGTAATTTGCCCCCCAAAAAACAGTTTCCGAACA
GCAAAAGCAAAAGCAGTACTACGTCATCAATTCCATCCATTCAAACAAAA
ACGGGCAGAACCAGAATATGACGTGTTTTGCTGCCGCCGCCGCCGCCGCC
GTCCGTTCTTTACGGCAGCAATACGTCAACGAGTTCGTCGAATTCGTCGT
GGACTTGAGTAGGCAATGGCCAGAGTCCGAGGCCTCCTCTCACGGGTTCG
AGCTGGCGGTAAGGATCGTCAAAATGCTCGCTGAACTCTCCTCTCCTCCG
GCGGGGGCGCAAGCCGCTGCGGAGACCGAGGACGAACCCCGGTGGCTCAA
GATTAAGTGGGGCATGGCTCTCGCTGGTCGTGCGATCGACCTGTCGTGGG
CGTGTCGCCTCTCTGTACCGGAGAAAGACAAGGTCAGGAGGCAAAAACAA
ATCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:22259..25614-

>mRNA_P-littoralis_Contig12.11.1 ID=mRNA_P-littoralis_Contig12.11.1|Name=mRNA_P-littoralis_Contig12.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig12:22259..25614- (Pylaiella littoralis U1_48)
ATGGCCACGAAGATAGGAGACCTCCGTGCCCGGCTGAAGACAGAACAAGC
CGCAGCCAGAACCACAACCGCAGCTGGAGCCGCCACCGCCGCCGGCAATG
CCGCAGATGCCGACGGACCCGCTGGCAAACCGAAGGAGATCCATGCGGAC
GAGGCAGCAACAACGGCGGGACGAAGCGCCGGGATGGTGGAGCTCGGGGG
CAGGGGAACAGCACCGGCAGCAGCAGCGGCGGCTGGGATGAAGTCGGGAC
GGGAGCACCACGCGAAGCAGGAAACGATGGTGCTGGTCGAGAAGGGGGAG
TTGCGGCAGCGAAAGGAGCGTGCCATCACATGTGTCAAGCCATGGGTTAA
GCGCTCGCTTAAGCTGGGCGTTCCAGGAGATGGCAACTGCTATCCAGCCT
CCTGGATGCTGGTAGCTGTATTGTGGAGCGTCCACGAGCGAGAAGCCTTG
GCGTCGTTGGTGACGAATCTGGAGGAATGCTCAAAGCCGGAGGGAGTCTT
CACCAGCGTCCCTCCTGACCTCATGCAATACGTCAACGAGTTCGTCGAAT
TCGTCGTGGACTTGAGTAGGCAATGGCCAGAGTCCGAGGCCTCCTCTCAC
GGGTTCGAGCTGGCGGTAAGGATCGTCAAAATGCTCGCTGAACTCTCCTC
TCCTCCGGCGGGGGCGCAAGCCGCTGCGGAGACCGAGGACGAACCCCGGT
GGCTCAAGATTAAGTGGGGCATGGCTCTCGCTGGTCGTGCGATCGACCTG
TCGTGGGCGTGTCGCCTCTCTGTACCGGAGAAAGACAAGGTCAGGAGGCA
AAAACAAATCGGA
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