mRNA_P-littoralis_Contig1197.2.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.440e-94 Identity = 167/382 (43.72%), Postives = 230/382 (60.21%), Query Frame = 1
Query: 1 FSKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHVPGITGFQAFRISKEGPQIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTGAVRLEATPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQKQAETKDQQADSLRILRSTGEREFDLCTKWLPPEDDEHNMEDDTPSSNGDSQTGGSVDGPLDEGDSXXXXXXXXXXXXXXXXXXXXXXXXXKAPVQ------HGRLGSFAAFLADGAPFLLGKVLRHRVDAKGVKEACLHWYTPSRALVDDAESVPFDEYARATFNESYEVVGAGTK---KQRYVEDVSWEPITSIIASCDGLIGDGKKVPAAVKYALKDALENAPEAAHLE 1119
F+K VKG ++F+RE LG+ F Y+ V V+ RTLENL NFK LV TR +P IT +QAF+I KEGP +VV VK++MHH+ WLGFS DGKTVGSG GF+ WR++ AV LEATPP+ LK V ++I ++++RQ+ASW +LP ++ GD +KQ K ADSLRILR+TG + FDL T WLP + DD+ S GD GG + L + D ++ HG + +F+ FL+DGAPFL+GKV+ R + G +E LHWYTP + LVD A +V FD YA A+F+ +Y A ++ +++ + D SWEP++ I+A+C LI G K+PA VK A P ++E
Sbjct: 268 FAKAVKGVDIFTREELGDAFRRGYKKVEVKCRTLENLANFKDLVAPVTRRIPTITNYQAFKIYKEGPSMVVTVKKKMHHEDWLGFSEDGKTVGSGAGFSPWRLMHAHAVHLEATPPYELKLVQDDVIHRVDMRQQASWEKLPVAYVGDPEKQKRVKLDHADSLRILRTTGTKAFDLDTSWLPLQV----SGDDSESDPGDGGDGGGLSHGLSDDDDNSSFGDYLDERLRQHQQSGSAPQGGGRRLRDQQTWAHGTMNTFSFFLSDGAPFLVGKVIDKR-EVDGQEEVALHWYTPRKRLVDSAANVSFDTYAGASFSPTYIAGDANSRVNSRRKLLPDSSWEPVSGIVATCSALISGGSKIPAHVKQXPWQASGGGPAQPNVE 644
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.810e-60 Identity = 113/190 (59.47%), Postives = 133/190 (70.00%), Query Frame = 1
Query: 1 FSKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHVPGITGFQAFRISKEGPQIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTGAVRLEATPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQKQAETKDQQADSLRILRSTGEREFDLCTKWLP---PEDDE 561
F++ VKG VF+REHL E FE +Y+T+PV+ RTLENL NFK LV TR +P IT FQAF ISKEG IV KVK ++HHD WLGFS DGKTVG+G GF GWR++R VRLE TP + LK VD EIIR+I+ RQ ASW RLPA D ++ K Q DSLR+LR G R FDL T WLP P DD+
Sbjct: 538 FARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQPVTRRIPNITKFQAFNISKEGTAIVAKVKTKLHHDDWLGFSADGKTVGTGAGFTGWRLMRERDVRLEETPSYLLKTVDEEIIRKIQTRQEASWKRLPAFVSLDPEQ---VKAQHLDSLRVLRMQGRRNFDLETNWLPDSFPADDD 724
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 220 bits (560), Expect = 6.200e-60 Identity = 144/380 (37.89%), Postives = 202/380 (53.16%), Query Frame = 1
Query: 1 FSKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHVPGITGFQAFRISKEGP-QIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTGAVRLEATPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQKQAETKDQQADSLRILRSTGEREFDLCTKWLPPED----DEHNMEDDTPSSNGDSQT-----GGSVDGPLDEGD-SXXXXXXXXXXXXXXXXXXXXXXXXXKAPVQHGRLGSFAAFLADGAPFLLGKVLRHRVDAKGVKEACLHWYTPSRA-LVDDAESVPFDEYARATFNESYEVV---GAGTK-KQRYVEDVSWEPITSIIASCDGLIGDGKKVPAAVKYALKDALE 1092
FS+G+KG+N+F+R HL E SY VPV TL N GNFKGL+ G VP IT ++AFR+ K G ++ V+VK+ MH W G DG + R++ PP+ LK V ++I+++E R AS RL A+FP D KD+Q S+R+LR TGEREFDL WLP D DE N+ DT +N Q G DG DE D + ++P ++GSFA F+A APFL+G+++ R+ +G + LHW PS L ++A SV EY+ +TF E + + G G K + V+DVSWEP+ I+A+C+ L+G+G+KVP V L+ A+E
Sbjct: 273 FSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDA---LPHDLFIGSPPRIQDAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGDEENVGPDTGDNNDAEQDFNGSGGHDHDGIDDEADDTSSDSDMEPEFRRRGRPRATGRPTTDRSPPISVQVGSFAFFVARRAPFLVGRIVAERLGEEGERGVDLHWLRPSSDYLSNNAASVTLREYSNSTFVEGFVLDTCNGNGRSGKAKRVKDVSWEPVEGIVATCERLVGNGRKVPTKVLRVLRAAVE 649
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 200 bits (508), Expect = 5.540e-54 Identity = 149/374 (39.84%), Postives = 204/374 (54.55%), Query Frame = 1
Query: 1 FSKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHVPGITGFQAFRISKEGP-QIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTG-AVRLEATPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQKQAETKDQQADSLRILRSTGEREFDLCTKWLPPEDDEHNMEDDTPSSNGDSQTGGSVDGPLDEGDSXXXXXXXXXXXXXXXXXXXXXXXXXKAPVQHGRL----GSFAAFLADGAPFLLGKVLRHRVDAKGVKEACLHWYTPSRALV-DDAESVPFDEYARATFNESYEVVGA-GTK---KQRYVEDVSWEPITSIIASCDGLIGDGKKVPAAVKYALKDAL 1089
FS+G+KG+N+F+R L EV + SY VPV TL N GNF GL+ G VP IT ++AFR+ K G ++ V+VK MH G +G + A L G R++ PP+ LK+V EIIR++E R AS L A++P Q+ K++Q DS+R L+ TG REFDL WLP DD E + N + GS GP D XXXXXXXXXXXX ++ + GSFA F+A GAPFL+G++ VD G + LHW+ P+ D A S+ DEY TF E Y + + GT+ K + V+DVSWEP+ I+A+CD L+G+G+K+P V L+ +
Sbjct: 70 FSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPN----APPHDLFIGHPPRIQDAPPYELKEVSDEIIRKVEQRYLASHESLAATYPLGAQR---AKNEQMDSVRRLKETGLREFDLPVHWLP--DDYGGAEAGVRNGNDIEEEDGSG-GPGDRXXXXXXXXXXXXXXXADCFRRGRSRAIGRSANDRDVVSIEEGSFAFFVARGAPFLVGRIAAESVDRDGTRGVDLHWFRPTNDHTRDKAASLTLDEYGERTFVEGYVMTASDGTRRSGKAKKVKDVSWEPVEGIVATCDKLVGNGRKIPNRVLKVLRSVV 433
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5L233_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L233_9PHAE) HSP 1 Score: 161 bits (408), Expect = 6.100e-43 Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query: 4 SKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHVPGITGFQAFRISKEGPQIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTGAVRLEATPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQK 453
+K V G +F+RE +G+ F Y+ + V+ RTLE+L NFK LV TR +P IT ++AF+I K+GP +VV VK++MHH+ WLGFS DGKTVGS GF WR++ AV L+ATPP+ LK V EII + ++RQ+ASW LP + G ++
Sbjct: 86 AKAVGGVEIFTREEVGDAFRRGYKKIQVKCRTLEHLANFKELVAPVTRRIPIITNYRAFKIYKKGPSVVVTVKKKMHHEDWLGFSEDGKTVGSRAGFRPWRLMHAHAVYLKATPPYELKLVQDEIIHRGDLRQQASWENLPVANAGGFRR 235
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.540e-17 Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 1
Query: 55 VFEHSYRTVPVRSRTLENLGNFKGLVYGA--TRHVPGITGFQAFRISKEGP-QIVVKVKRRMHHDTWLGFSPDGKTVGSGEGFAGWRILRTGAVRLEA-TPPFHLKDVDPEIIRQIEIRQRASWARLPASFPGDVQKQAETKDQQADSLRILRSTGEREFDL 528
F +Y+T+PV + TL NLGNFKG+ R++ GIT +AF++ K+GP Q+ V +K MHH+ + G + DG G L G V A PPF LKD+D + +I+ R + RL A +P D K+ E + S+++LR G +++DL
Sbjct: 15 AFSAAYKTLPVHTTTLRNLGNFKGVFPPGPVVRNIHGITKSRAFQLLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHD------LFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKDWDL 170 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1197.2.1 >prot_P-littoralis_Contig1197.2.1 ID=prot_P-littoralis_Contig1197.2.1|Name=mRNA_P-littoralis_Contig1197.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=492bp FSKGVKGRNVFSREHLGEVFEHSYRTVPVRSRTLENLGNFKGLVYGATRHback to top mRNA from alignment at P-littoralis_Contig1197:8032..9769+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1197.2.1 ID=mRNA_P-littoralis_Contig1197.2.1|Name=mRNA_P-littoralis_Contig1197.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1738bp|location=Sequence derived from alignment at P-littoralis_Contig1197:8032..9769+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1197:8032..9769+ >mRNA_P-littoralis_Contig1197.2.1 ID=mRNA_P-littoralis_Contig1197.2.1|Name=mRNA_P-littoralis_Contig1197.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1476bp|location=Sequence derived from alignment at P-littoralis_Contig1197:8032..9769+ (Pylaiella littoralis U1_48)back to top |