mRNA_P-littoralis_Contig1195.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1195.10.1
Unique NamemRNA_P-littoralis_Contig1195.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1195.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1195contigP-littoralis_Contig1195:51124..55013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789502.9048476-CDS-P-littoralis_Contig1195:51123..512141680789502.9048476-CDS-P-littoralis_Contig1195:51123..51214Pylaiella littoralis U1_48CDSP-littoralis_Contig1195 51124..51214 -
1680789502.9159808-CDS-P-littoralis_Contig1195:54927..550131680789502.9159808-CDS-P-littoralis_Contig1195:54927..55013Pylaiella littoralis U1_48CDSP-littoralis_Contig1195 54928..55013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1195.10.1prot_P-littoralis_Contig1195.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1195 51124..55013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1195.10.1

>prot_P-littoralis_Contig1195.10.1 ID=prot_P-littoralis_Contig1195.10.1|Name=mRNA_P-littoralis_Contig1195.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
TCSSNSALVTTWTSASESAGEDIGNRNTTECGAVGLTRGWMVSGRSHVVA
SRRWPLNG*
back to top

mRNA from alignment at P-littoralis_Contig1195:51124..55013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1195.10.1 ID=mRNA_P-littoralis_Contig1195.10.1|Name=mRNA_P-littoralis_Contig1195.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3890bp|location=Sequence derived from alignment at P-littoralis_Contig1195:51124..55013- (Pylaiella littoralis U1_48)
ACCTGCAGCTCGAACTCAGCCCTCGTCACCACTTGGACGTCGGCATCGGA
GTCGGCTGGCGAGGACATAGGAAACCGAAATACCACCTGGAATTTATTCG
ATGAATCCGATGATCGTGCCCAAAGGGGTGGGGGTGGCAGGGTACCGCGG
AGGGGCCGGGTCAGCAAATGATTGAGGTGGAACATAGCAGCGGGCCTGGT
TAACGCGTGACAACCTCGTGCTCCGGCACGTTCGACGCCTTTTAACCGTG
GGTGGCATATGTTGCACCCACACCCCGTCGCTATATTTCTTCGTGAGTGA
TATCGGTCACTCACGCCCCGCCGGCGCTTTTATTTACCCCCGTAGCCCGA
TCAGCATGCGCCGGCATATTTCACATGGAATTTGAGGATAAGTGCGCATG
CCCCACTACCTACCCCGGATCACCCTGGGCACTTCGTACGTACTAACATG
CGGTTTTCGTGCAACTGCTGTATACAGGCTGGGTGCGGCCTTTGGTATCG
CACCGTAACTGCCCCAGCAGTGCCTACGGCGTGACGTATGTGCGATAGGT
GTGCGCCGTACGATTCCGTGTATACGTGCCCGCTGCAGTGTTCAAAGCTC
ATGGTTGCGACTCTTCTCTCTGATGGTAATGTTGGCTCCGAAAAGAAAAA
AAACCTCTTGGGAAAATACAAATTCATCGCCAAATTAAAACCAGACAGGT
GGGTTCGCAATCGTGAGATAAGAGTGGGTCCATAGCTGCAACTGACAACT
TACTTATCCCGTGCGCGTGTCTCCGCGCCGCGGGGCCGGTTACTCCATGC
CGAATCGGTAATCCTGTTTATTCTATCGCCACGCCGGTGGGAACTTCGAG
TAAACGGTGCTGTTCCTGCTTTTAACAGACCCTAATTTCGATGCCATATG
TATGTTTGTCTTCGTTCTCGTGGTACGCAGAACTACGTGCCGAACCTATT
TTCCATACTTGTGAGAACCGCGACCCTGCTGGTACTATTGAGGTTTTTGG
CGCCGGCCAATGGTCATGGGTACGTATGACAGCGACAGCAGATGGTGCTA
CGCGAATTTTATGGGCCATGCCTATTTTCCACCCTTGCGAAAAACAAAAC
AAAACGACATTGGTGGCACCACTTCGGTCGAGGCGCCGGCCTCTTGACAT
CGTAATTGTGCGGAGTGCACCGCGACAACGAAAAACAAAACAAAACGACA
TTGGTGGCACTACGCCGGTCGAGGCGCCGGCCTCTTGATATCGTAATTGT
GCGGAGTGCACCGCGACAACGACGCGGGGTTTTCCGTAATGCGAAGACAT
GCGGATTTGTTCGAGCTTCGCTGTATATCGCACGCGTTATGTTACTCTCG
CGGTTACCGTGGCAAAACTACGGGACGCGAGGACGTGGGCAAAACCTGCT
TCTCGCACCTGCGAGGAACTCGCCCTTTTTGACACTACGTTGGAAGTGCC
ATCGCCTGAAATCACCAGTGTGTGATGCGGGCGGGATAATACATGTGTCG
TATGCGAGAACCGCCGGGTTCGTTTTTCTCTTTGTATTATCTTCCGTTTC
AGCTTTACTGAATTTCCCTTTGTGGTCGACTGAGTCGACTACACCCTATA
ATACATGCGTTGTACTCGAAACCCCCGGGTTTGTTTCTCTCGTCTCTTTG
TATTATCTTTCGGTTCAGCCCGCTGAATTTTAGTGTTTCCCCTCTCCCGT
GTGGTCGACTACGTCGGCTGCACCCTCGAGTCGGATTATCATATACTTTG
GTATATCTTTTATTTCAGCTTGGCTGAATTTACCCTGTGTGGTCGACTAC
GTCGACTACACCCTATAGTCGACTGCGTCGACTACATCCTATAATACATG
CGTTGAACTCGAACCCCCGGGTTTGTTTCTCTCGTCTCGTTGTATTATCT
TTTCGGTTCAGACCCGCTGAATTTTTGTTTTTCCCCTCTCCCGTGTAGTC
GACTACGTCGGCTACACCCTCGAGTCGGAGTATCATATACTTTGGTATAT
CATGATTTCAGCTTGTGCTGAATTTACCCTGTGTGGTCGACTACGTCGAC
GACAACCTCTAATACATGTGTTACACTCGAAACCTCCGGGTTTGTTTCTC
TCGTCTCTTTGTATTATTTTTCGATTCAGACTGCTGCATTTTTCTTTCCT
GTGTGGTCAACTACGTCGACTACACCCACGAGTTGGGGTATCACATACCT
GGTACTTCGGTATATTGATAATAGATGTAGTTGACCTCACGGCATTGACT
GGCAAATCGTCGTGTATATGTGCAACTATATAAGCGACTATTGCCGCTAC
TGCGTGCCCTCCCTGACCGTTGTGTGCGTGAACTCACTACATGGAAGTTG
TGGATCGCGCAACAATCGGACAGCAGTGGTGGCGCATGGTAGCACCATAG
TTTGCCCTGCGTCGTATGAAGCCTGCAACTCCGGTTCACACCCTTTAGTC
GAAGTATTATATACTTTGGTATATGGTTAATGTAGTTGACCTCAGGGCGT
TGACTGTCGAGTCGTTGTGTATGTGCAACGATATATGTGACTACTACTGC
TGCTGTATGCCCTCTCTGACCGTTGTGTGTGCGATCTCACGACATGATAT
CGTGGATCGCGCAACAATCGGACAGCAGTGGTGGCTCATGGTAACAGTAT
CGTTGGCCCTGCGTCAGATGACGCCTACAACTTCGGTTCTCCGCCATTGT
GTGGGCGGCGGTCTCTGTACCACGGATCAAAGTTGGATTTGGGTGACCCG
CATTTTTGTTTTTGTTTCGTCCGACCATGTCCCGGTGACGTCATTACGGT
ACCTGCATCCGGTACCTCGTACGTACCAAGTGCGAAATGCGCGATAGTGG
ACTACGGTATGGCTATCTGCACCTGTGCTGCGCCGGCAGCCTCATTATGG
GTGTGCGTCTATCATTACGGGTGTGCGTCTATCGAATGGCGACCTGGGTT
GGTATGAAGGCAACTCGCTCTGTGACGTGCGACAGTCTCAAATAACTCAT
ATGATCGCATCGTGGTACCGTATGACATGTCCCTTGACAAATGTGAGACG
ATATATTTGACGTCATTACAGTACCTGCATCCGGTACCTCGTACGTACCA
AGTGCGAAATGCGCGATAGTGGACTACGGTATGGCTATCTGCACCTGTGC
TGCGCCGGCAGCCTCATTATTGGTGTGCGTCTATCATTACGGGTGTGCGT
CTATCGAATGGCGACCTGGGTTGGTATGAAGGCAACTCGCTCTGTGACAT
GCGACAGTCTCAAATAACTCATATGATCGCATCGTGGTACCGTATGACAT
GTTCCTTGACAAATGTGAGACGATATATTAGACCCATGGCCAAGCGCGCC
CGTTAGCGACAGAACGCGTGCAGCGTCCCTACGCTGTGCCACAGTGCGTG
TGTCAGTGATCTCTGGTATGGGTTCGCCCGGTTTTTAGATGACCGGCGTG
CGACGGCTGTCTACATTTATACGATGTGCGAACATCCACTGCTGTGTATC
GTTACCTCCTGGCAGGTCTCATATCAAATGTGTAACGAGATGACAGCTTG
TGTTGACGTACGCACGTATTGCGCAGTAGCGCGTCGTGCGCCTACGCTGC
ACCGGCAGCGCGTGTAACGTGGTGCTCTACTGTGTGCCCACCAGATGGTA
AATGTGCATAATATGCCTCCTTAGGCTCGGCCCTAACCCTAGCCATACCT
ACTCCGTGCCTATCCGCATACGAAGCGCGTATCCGCGCACAGCCACACAA
CAGGCGATTTTCCTTGCAGTCCTAACAATGTTACATGCGTCGCTCGTACC
GAGTGTGGCGCAGTAGGGCTGACTCGCGGCTGGATGGTGTCCGGCCGCTC
CCACGTCGTAGCCTCGCGCCGATGGCCCTTGAACGGCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1195:51124..55013-

>mRNA_P-littoralis_Contig1195.10.1 ID=mRNA_P-littoralis_Contig1195.10.1|Name=mRNA_P-littoralis_Contig1195.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig1195:51124..55013- (Pylaiella littoralis U1_48)
ACCTGCAGCTCGAACTCAGCCCTCGTCACCACTTGGACGTCGGCATCGGA
GTCGGCTGGCGAGGACATAGGAAACCGAAATACCACCGAGTGTGGCGCAG
TAGGGCTGACTCGCGGCTGGATGGTGTCCGGCCGCTCCCACGTCGTAGCC
TCGCGCCGATGGCCCTTGAACGGCTGA
back to top