mRNA_P-littoralis_Contig1192.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 124 bits (311), Expect = 6.830e-28 Identity = 74/175 (42.29%), Postives = 97/175 (55.43%), Query Frame = 3
Query: 264 RLATPLIAASVSFRCEHVEGFFQSTKRELVSFGASQFCQNELRAQVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIERHQRGADV-----------FACLFGANH*CPHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
RLATP + A V+F HVE FF+ K+EL++ GASQ+CQ QVD + +Y AEL++ G V + G P E+ + +RS+RLKLN++ P +E Q + + P VV VRYK T NR SH+VVFGP HLC CLQLLR LPCR +
Sbjct: 817 RLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQ-----QVDEAQSYDAELVSSGRVEENGDPLPFHENDLAKIRSLRLKLNVLQVAPPDTDLEGDQLAGEAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHY 986
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KGV5_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.430e-20 Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 3
Query: 264 RLATPLIAASVSFRCEHVEGFFQSTKRELVSFGASQFCQNELRAQVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIER-----HQRGADVFACLFGAN---------H*CPHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
RLATP IAA + F+ +H+E FF L GASQFC ++R+++ S +Y E I V P+ + D+R +LN++ P A ++ + G+ V ++ P + VRYK T NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 6 RLATPAIAAQLPFQEKHMENFFTPINEGLQRVGASQFCSRDVRSELGGSQSYDVERI----VDRQPAQDPVKVGQISDLRE---RLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 176
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.200e-18 Identity = 62/177 (35.03%), Postives = 90/177 (50.85%), Query Frame = 3
Query: 267 LATPLIAASVSFRCEHVEGFFQSTKRELVSFGASQFCQNELRAQVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIER-----HQRGADVFACLFGAN---------H*CPHRTVVPVRYK-DTNRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
LATP IAA + F+ +H+E FF K L GASQFC ++R ++ S +Y E I V P+ + D+R +LN++ P A ++ + G V ++ + P + VRYK NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 79 LATPAIAAQLPFQEKHMENFFTPIKEGLQRVGASQFCTRDVRRELGGSQSYDVERI----VDRQPAQDPVKVGRISDLRE---RLNLLQPPPPATDLDEGCENGREGGLLVDTSMWARSSLEDFLSLTQDVPSSAIFAVRYKLIPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 248
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.210e-18 Identity = 63/180 (35.00%), Postives = 91/180 (50.56%), Query Frame = 3
Query: 258 LRRLATPLIAASVSFRCEHVEGFFQSTKRELVSFGASQFCQNELRAQVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIER-----HQRGADVFACLFGAN---------H*CPHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
L +LATP IAA + F+ +H+E FF L GASQFC ++R ++ S +Y E I V P+ + D R +LN++ P A ++ + G+ V ++ P + VRYK T NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 356 LFKLATPAIAAQLPFQEKHMENFFTPINEGLQRVGASQFCTRDVRRELGGSQSYDVERI----VDRQPAQDPVKVGQISDFRE---RLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 528
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.530e-16 Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query: 264 RLATPLIAASVSFRCEHVEGFFQSTKRELVSFGASQFCQNELRAQVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIER 563
RLATP I V+FR + VE FFQ K+EL++ GASQ+CQ E+RAQVD +Y EL+ G V + G PL +D +R++RLKLNI+ P +ER
Sbjct: 189 RLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQKEIRAQVDGLESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTDLER 288
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 2.270e-14 Identity = 52/131 (39.69%), Postives = 66/131 (50.38%), Query Frame = 3
Query: 396 QVDVSSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIERHQRGADV-----------FACLFGANH*CPHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
+VD + AY AEL++ G V + G PL E + +RS+RLKLNI+ P +E Q + + P V VRYK NR SH+VVFG HLC CLQLLR GLPCR +
Sbjct: 169 KVDEAQAYDAELVSSGRVEENGDPLPLHEHDLAKIRSLRLKLNILQVAPPNTDLEGDQIAGEAAVDNTMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHY 299
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.480e-14 Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 3
Query: 408 SSAYYAELIARGYVSDTGGSRPLGEDIVEDMRSVRLKLNIINDTPTARYIERHQRGADV-----------FACLFGANH*CPHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
+ +Y AEL++ G V + G PL E + +RS+ LKLNI+ P +E Q + + P VV VRYK T NR SH+VVFGP HLC CLQLLR GLPCR +
Sbjct: 209 AQSYDAELVSSGRVEENGDPLPLYEHDLAKIRSLCLKLNILQVAPPDTDLEGDQLAGEAAVDNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHY 335
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 9.050e-8 Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3
Query: 618 PHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
P + VRYK T NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 120 PTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 165
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.230e-7 Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3
Query: 618 PHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
P + VRYK T NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 506 PTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 551
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.370e-7 Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3
Query: 618 PHRTVVPVRYKDT-NRLSHVVVFGPGESHLCFCLQLLRHGLPCRTF 752
P + VRYK T NR SH++VFGPG+ HLC CL+LL+HGLPCR +
Sbjct: 674 PTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHY 719 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1192.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1192.6.1 >prot_P-littoralis_Contig1192.6.1 ID=prot_P-littoralis_Contig1192.6.1|Name=mRNA_P-littoralis_Contig1192.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp MDSDVQDPSRHELKEAGHGTLRRLATPLIAASVSFRCEHVEGFFQSTKREback to top mRNA from alignment at P-littoralis_Contig1192:39232..41514+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1192.6.1 ID=mRNA_P-littoralis_Contig1192.6.1|Name=mRNA_P-littoralis_Contig1192.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2283bp|location=Sequence derived from alignment at P-littoralis_Contig1192:39232..41514+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1192:39232..41514+ >mRNA_P-littoralis_Contig1192.6.1 ID=mRNA_P-littoralis_Contig1192.6.1|Name=mRNA_P-littoralis_Contig1192.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig1192:39232..41514+ (Pylaiella littoralis U1_48)back to top |