mRNA_P-littoralis_Contig1188.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1188.5.1
Unique NamemRNA_P-littoralis_Contig1188.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1188.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1188contigP-littoralis_Contig1188:31630..32156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size527
Hectar predicted targeting categorysignal peptide
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.0135472-UTR-P-littoralis_Contig1188:31629..316411680789498.0135472-UTR-P-littoralis_Contig1188:31629..31641Pylaiella littoralis U1_48UTRP-littoralis_Contig1188 31630..31641 +
1680789498.036983-UTR-P-littoralis_Contig1188:32004..321561680789498.036983-UTR-P-littoralis_Contig1188:32004..32156Pylaiella littoralis U1_48UTRP-littoralis_Contig1188 32005..32156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.0252082-CDS-P-littoralis_Contig1188:31641..320041680789498.0252082-CDS-P-littoralis_Contig1188:31641..32004Pylaiella littoralis U1_48CDSP-littoralis_Contig1188 31642..32004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1188.5.1prot_P-littoralis_Contig1188.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1188 31642..32004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1188.5.1

>prot_P-littoralis_Contig1188.5.1 ID=prot_P-littoralis_Contig1188.5.1|Name=mRNA_P-littoralis_Contig1188.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MLEMGRVAKWFTAHARHESLIHPKVSILLLFWLLVDDVASAGGVFIFFTT
VMRNVRVRIATATATALYQRISIYPRVHGLSLGLIDSYCCFCSWFENMLF
LFFVRRPGRRRCRVVRCRCC*
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mRNA from alignment at P-littoralis_Contig1188:31630..32156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1188.5.1 ID=mRNA_P-littoralis_Contig1188.5.1|Name=mRNA_P-littoralis_Contig1188.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=527bp|location=Sequence derived from alignment at P-littoralis_Contig1188:31630..32156+ (Pylaiella littoralis U1_48)
TGTGCGTACCGAATGCTTGAGATGGGCAGGGTGGCTAAGTGGTTCACTGC
GCACGCGCGCCACGAATCGCTCATCCACCCAAAGGTATCAATACTGCTGC
TGTTTTGGTTACTGGTTGATGATGTTGCCTCTGCTGGAGGTGTGTTTATT
TTCTTTACAACGGTAATGCGAAACGTACGCGTGCGTATTGCTACTGCTAC
TGCTACTGCTTTATATCAGAGAATTTCGATTTATCCTCGTGTTCACGGCT
TGTCCTTAGGGTTAATTGATAGCTATTGTTGTTTTTGTTCTTGGTTTGAA
AACATGCTATTCTTGTTTTTTGTTCGTCGTCCGGGTCGTCGTCGTTGTCG
TGTCGTTCGTTGTCGTTGCTGCTAGTCTTACGCTTGCCTTTGGTTTCCTC
GTTTTCATCTCGTGTGTATTACTTCTTTTTTGTTCGTCTGATCAGTTTCG
CTACCTGCCACTCGGGTTCGGGGGCTTCGAAATCGTGACGGGCCTTCCTC
ACACGGCCTTCATCGATGCCGCCAAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1188:31630..32156+

>mRNA_P-littoralis_Contig1188.5.1 ID=mRNA_P-littoralis_Contig1188.5.1|Name=mRNA_P-littoralis_Contig1188.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig1188:31630..32156+ (Pylaiella littoralis U1_48)
ATGCTTGAGATGGGCAGGGTGGCTAAGTGGTTCACTGCGCACGCGCGCCA
CGAATCGCTCATCCACCCAAAGGTATCAATACTGCTGCTGTTTTGGTTAC
TGGTTGATGATGTTGCCTCTGCTGGAGGTGTGTTTATTTTCTTTACAACG
GTAATGCGAAACGTACGCGTGCGTATTGCTACTGCTACTGCTACTGCTTT
ATATCAGAGAATTTCGATTTATCCTCGTGTTCACGGCTTGTCCTTAGGGT
TAATTGATAGCTATTGTTGTTTTTGTTCTTGGTTTGAAAACATGCTATTC
TTGTTTTTTGTTCGTCGTCCGGGTCGTCGTCGTTGTCGTGTCGTTCGTTG
TCGTTGCTGCTAG
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