mRNA_P-littoralis_Contig118.81.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.81.1
Unique NamemRNA_P-littoralis_Contig118.81.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:316313..321136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size361
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.8358998-CDS-P-littoralis_Contig118:316312..3163851680789492.8358998-CDS-P-littoralis_Contig118:316312..316385Pylaiella littoralis U1_48CDSP-littoralis_Contig118 316313..316385 +
1680789492.8449671-CDS-P-littoralis_Contig118:320850..3210621680789492.8449671-CDS-P-littoralis_Contig118:320850..321062Pylaiella littoralis U1_48CDSP-littoralis_Contig118 320851..321062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.8553398-UTR-P-littoralis_Contig118:321062..3211361680789492.8553398-UTR-P-littoralis_Contig118:321062..321136Pylaiella littoralis U1_48UTRP-littoralis_Contig118 321063..321136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.81.1prot_P-littoralis_Contig118.81.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 316313..321062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.81.1

>prot_P-littoralis_Contig118.81.1 ID=prot_P-littoralis_Contig118.81.1|Name=mRNA_P-littoralis_Contig118.81.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
ATCNLIISLSVDKAKPWLLSKVTQDSLPEKTYHQESLRTSASSSSRTSCH
HVKHFQETLLSISPLSGTPKRTASRTSKKTITTGVPRTSLRAFW*
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mRNA from alignment at P-littoralis_Contig118:316313..321136+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.81.1 ID=mRNA_P-littoralis_Contig118.81.1|Name=mRNA_P-littoralis_Contig118.81.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4824bp|location=Sequence derived from alignment at P-littoralis_Contig118:316313..321136+ (Pylaiella littoralis U1_48)
GCCACGTGCAACCTCATTATTTCCCTTTCTGTGGACAAGGCGAAACCATG
GCTTCTCTCTAAAGTTACCCAAGGTAAGACCGACCACCTCGACATGATCG
CGCACGCGCGACAGTCAGCCGACCTTATCTGGGGCGTTGATCTCCTGTCG
TGCTCGTGTGTTGTACTGCTGCATGGAATCATCTCACCCGAGCCCCCCAA
AGAAAGTCTGTTTTTGTTACTGCTGTTGTAGTCACGATTTGCAAGTCCTC
TCTGTGTGACGGATGCGTTGTAAACCGACAAAACGTCGTGAGTACGGGAT
CATGGAAGCTTTTGAGTGTCGCTTCTAGTGGCCCGTTGGACGGGAAGAGG
GCAAGGATGGACGTCCTCCCTTTACGCTTCCTACTTTGACGATGGCGTTT
CTCATCTACCTACGCTTGTTGTACGATACGAAGCACTCCGTACTTTCTTA
TCATACAAATGATACAAGTACATACATACTATACGATACTTCGAAGAATG
AACTTGGGAGTCGTCAGTTTTGCCAACCTGGACGGTAACCTTACCAACTC
TATGATTGCGTGAAAAGACAAAGGCATGTACTGATATCATATGCAGGTGA
ATCAGTACCATGCCATCCAGCAGCGCCGAGACTGATCGCATCTCATGCAT
GTATCTTATCTAATCTGCACTGGTACCAATTCTCGTATGTGACAGCTGGT
ACCAATAGTGACAGAAAATACAGCAGTGCCTCTGTGTGTTGTCGTCCCTT
CTCCCGTCTCTATCCAGCAACGAACAAGCGAAGAAATACTCGTATGTACG
ACTGGCGGAAGCGGACACCCCCCCCAACCAGTGTCGAAGACTTCAGCATA
CCCTGGATGACGCACATACCGTACATATCAGGACATGTCATACCACACGA
CGAACCACAGCTGTACAAAATCTTTCATTTCATAGCAGTACCAAATGCGC
TCGTCGCCCCGGTTGTCTAGTTCCCTCCTTAAGGGGGCGCTGGCTAGGGC
GGTAACTATTTCAATTCTAAATCCAATATGTATACTAAGGGCCCAAAAAC
ACGAAAACTCCTTCCGGCCATGGGTGTCCCAACCAACGGCGATTTCAGTA
GAGGACACCATGTAGAGGCGACGTGTGTATTGGCATGCTCAGATCTGTTG
ATGGGGAAAAGATATCGAGGGCCCGCAAGCAGTATATAGCTGAAAAACTC
CGCAAACCGGACCGACACCAAACATTTGATGCGGTTGTACTCGCCGCCAG
ACCCTAACCTCCTAAACTGCGTCATCCGAGGTAGGTACGAGTATGGTATT
GGCTACTGCTGTTGACCCGCAGTTCAGGATGTTAGGGTCTGTGGCGGCGA
GCACCAGCAGTGGAAAATGTTTTTTGGTTCCAGTCCACTTTGCGGATTTT
TTAGCCACTACTGCGGGCCTCGATATTTAAGCCCCTGCAGCAGGTCTGAG
CGTCCCAATATACACATCGCTGCTGCAGAGTAGTGTCCTCTACCGATATC
GCCTCTCATAAATGGGACTCCTCCAGCGGGGAACCTTATTTGAGCCAAAG
CCGTATTGGTTTGAGAGAGAGATTGGAGGTGGACTCGTGATATGCATGTG
AAGAGAAGCCTCTAGCGCCGCTCTGTGCGATAATCAACGATTTTTTGTTG
CTAAAAACTACCGACACCATCGTAGTCACTGTAATACAATCACGTGGGTT
TGGTGCGTGTGTTGCGTCCCATTTATTCTGGGCAACAGTCTACGCCTTTC
AGTGTGAAGTGGGTCCACCAGCCGGGGTCACACAGAAGGAAGGTCGCACA
CGAGCTTTTTTGTTTTGTTCTTTTGTTTCATTGCCCACACCTTTCCTCCT
GCAGTATCATACGTGCCGTTGGTTTTTGATGCGAGTCGGGTTCAGCAACC
CCTTCTCTCTGTTTGTGTGTGTGTCATCCTATTTATGTTTACTCACTTAC
GAATGATTCGCTTTCCTGTAAAGTCGAAAGAAATGCTCTCACGAGAGAAT
CGAACCTACACACGAAGTAGTGAGTTGAGGGTCCGCTGTCAACCTGTTTT
GGAATTGACCGATTTGAAAACTTGCGAAGTACTGTAGCCCAGTAATCACA
CACTGGGTACCTCACACCAGCAGGAAGGTGTTACGTATGTATGTTTCCCC
TTTTTTTTGTCGTCACGAGCAGCAGAAATTATGAAATTTATTACCCTCCG
CCCCACTGATTGATGCGAGATTGTACAAGTGGTATTTCATACGCACATGT
CATGCATACGAAGAACATATCAAACCTGTGGTTGATCGGTAACATTCTGG
TTACTCCGGTTTAAAATGCTTCTGTACAGCAGTACTAGCACTTCGAAGGT
GGCAGGTGTCATTCCGGTTATGTTTACTTGAAGCACCAGGTGCATCAGTC
CGATCGGTCTCGAACGGATTGTTTTGATTTTATTTTCAATGAATCACTGC
AGACAGCAGTACCAGTCCTTGGGGGTCTCCATCTGTGCAGGACGGTCCGG
CAGCCGCACTGGTGTCATTTGTGTCATTGGTCGTTTGTTCAGGACTTCAA
CTCTCTTCAACTCCTCTCGACCGTATCGTATTATACGTATCATACAGCAG
TACTCCACCTTCAATTCTACATCTTTCCCGCAACCCAAACCTTGCCGGCA
ACCCTAACCCGCACCCCGAGTCATTCCCGAAGTAGGCTTGTCATAGCGCA
GCTCCGCAGCGCGATAGATCGGAAGAACGAAAAAACACGCCTTGAACGGA
AAAGCACGAAACAAACGGCGTATTGTTGACCATTTCATTACGCTGTCCGA
GGTTTGTGGACCACTCAACACGGGAGTCCTGCACAAATGCGGATGCAGGC
CCGTCCTGCGTGTCTACGGTATTGGGGGCTTCCGTTCGACACCTTGCTCA
GGAGTCCTTTCTGGCAAAACAAAAAAACTCAAACAAAAAACCCCACTTTT
TTTTTTTTTGACCTTTTCCCTCCTGGGCGACCAACCTCGGCTGATGCCCC
CCAACATGAATCGAAAAGGTGATGACTAGCGTCCATAGTTGATGGCACGG
CGGGACATGCACACAGCATGACACATTGTTCTGCTGTGCTGTGCGGTGCT
GTGCCGTGCCGTGCTGTGCTGTGCTGCCGCTGTGTTGTATGTAGGTCGGA
GAATATAAAAAGCTCACGCGTTCAAAGTGTACAGCAGTTTCATAACTTAA
ACCCCCCCTGCGAAAAGTCAAGGATGAAAATTTCAATGGTCAGCTTCAAA
AAAGCAAGTGAACGCGTGCCATTTTTTTTTCGGCAACGCGTTCACTTTCT
CATGAATAGGATGCGTTTCGAAAAATAAGCAGCTAGAAGTAAAATAACAA
AATGGCGACCTAAAATGGCGACATTTAGCTACCCAGGGGCGAAAGTGGAT
TAATCTCTCGTGACTCGTCTGATCTTCTTCAAGTCCGAGTCCTTTCACAC
GCTGTATTTCCCGTTTTCAAGTGACACCAGTGCCAGCTCCAGTACTCAGC
ATAGTTTTAGGTCATCTGTTACTACTGAAACTGGCATCAGGTCTCGAATT
TGAAATCTCAAAATTCCAAATTCGAAACTTTAAACCTTAAACTCCAAACG
TGTTTCGGTTTCTTTCACCGAGCACCGAACACATGGACGTGTTTGTACAT
GAAAGAAAAAGAAAAGACAACAGCAGTGTCCTCGGCTTTAAATTTCAAGT
GCCCAAGAATGCTCTTGGAATTCGTGTTTTTTTCTCGGCCACTTTTCCTA
CTTTTGCCTGGAATGTGTCCGGAAGTGAAAGTTTTACAGGTTTTCGTCGC
CGCGCGTGTCCTGGACCGTGCGAAAAGAATAATGTCATGGAAAAGATAAA
AGCGTCCCATTTTTTCGTTTCAGTCGTCCGGCCTGTTATCATGAAATGCG
GTAAGACCCGGCACTAATAACCGTACTGGCTGTATCTTGCGGTTTGGCAT
GCTCTGCTGTACAGCAGTGGCGACGAGGAGAGTTGATGCTATGCGGGACA
CCAGCGGTATCGCGTACGAGTACAGATTACGGATTGGCTACGATTGCGCA
ATGGTCACGTAATTGCCACTTTTATCGCCAACCACCCATTCCTGATTGCT
TCGAAGTACTTCGTTTCATATACCTGTAATATAGCGCGGTTCTGAAGTAT
ATGATGATACAGCAGCTGGATTGTTTGTCTCGCCTCATGGCCCATGCCCG
CCGACGATGATTCCAAAATGGCCCAATAGGTATGGTATGTTTGGGGGGGG
GGGGTCTTAATGCAACCGTTCCACGTCTCCCTCGTTTTTTTTGTTTTTCG
TTCGAGATTCACCGCCGATTTTTCACAGAACTTCAGATTATCGTTCTACT
CTTCATCCCTGTGCTCCCCCTCGGTATCAATCCCGCCGCTGCTGCTGCTG
CTGAGGGCTGTTGCCCCTCTTTTTTCCTTCCAAGAAGTCATTTGGTAGCG
CCCAACAACAAACGACGCGTTTTGTATGACAAGAGCCCCCCCCCACCCGT
TTCTGCCCGCCTTCCACGTGTTCTCCCCCCGCCCGTAGATTCCCTGCCAG
AGAAAACATATCACCAAGAATCCCTCCGCACAAGCGCTTCTAGTTCTTCC
CGCACCAGCTGCCATCATGTCAAGCACTTCCAAGAAACACTACTGTCAAT
CAGCCCACTATCTGGGACGCCAAAAAGAACAGCCTCGAGGACGTCGAAAA
AAACGATAACAACGGGAGTCCCAAGAACATCATTGCGAGCGTTTTGGTGA
AAGGGGGCGCACGGACGACGGTTTCCCCGACGACGACGACGAGGGCGGCC
CGTGGGAGAGAGAAAAGAGAGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:316313..321136+

>mRNA_P-littoralis_Contig118.81.1 ID=mRNA_P-littoralis_Contig118.81.1|Name=mRNA_P-littoralis_Contig118.81.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig118:316313..321136+ (Pylaiella littoralis U1_48)
GCCACGTGCAACCTCATTATTTCCCTTTCTGTGGACAAGGCGAAACCATG
GCTTCTCTCTAAAGTTACCCAAGATTCCCTGCCAGAGAAAACATATCACC
AAGAATCCCTCCGCACAAGCGCTTCTAGTTCTTCCCGCACCAGCTGCCAT
CATGTCAAGCACTTCCAAGAAACACTACTGTCAATCAGCCCACTATCTGG
GACGCCAAAAAGAACAGCCTCGAGGACGTCGAAAAAAACGATAACAACGG
GAGTCCCAAGAACATCATTGCGAGCGTTTTGGTGA
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