mRNA_P-littoralis_Contig118.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KPQ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ6_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.200e-60 Identity = 105/222 (47.30%), Postives = 136/222 (61.26%), Query Frame = 1
Query: 97 SFTCDVFCVHVCAIAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
S T D V V + +A R GIG G G++SI L++ALAV PHES K KV GY WHDTT+D+ S + Y GM VGPD HE NH+++C+ YSG +TC ++G+ EQ +SKK +Y RS+NTM +NF + LRVINE QN+ +N+KTL T L ++ HP+ + + C ALW GR FC KPVMRVFD GRVD V L +L
Sbjct: 9 SVTLDALAV-VVQLPESATRCGIGGGDGVHSIMALQIALAVDVPPHESAKNFKVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGMFVGPDGPHEKNHSKECQRQYSGFTTCDELAGINLNPHEQDHSKKALYLRSLNTMTSSNFTFALRVINERQNQGFNRKTLRTLLASVTEHPKDSFAGCEAALWRCGRRFCGKPVMRVFDCLGRVDIVMLATVL 222
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KGV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV9_9PHAE) HSP 1 Score: 202 bits (513), Expect = 8.190e-60 Identity = 101/209 (48.33%), Postives = 131/209 (62.68%), Query Frame = 1
Query: 136 IAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
IA +A+R GIG G G++SI L++ALAV PHES K KV GY WHDTT+D+ S + Y GM VGPD HE NH+++C+ YSG +TC ++G+ EQ +SKK + RS+NTM F+NF + LRVINE QN+ +N+KTL T L ++ P+ + C ALW GRCFC K VMRVFD GRVD V L +L
Sbjct: 108 IAESAIRCGIGCGDGVHSIMALQIALAVDVPPHESAKNFKVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGMFVGPDGPHEKNHSKECQRQYSGFTTCDELAGINLNPHEQDHSKKALCLRSLNTMTFSNFTFALRVINERQNQGFNRKTLRTLLASVTELPKDSFDGCEAALWRCGRCFCGKSVMRVFDCLGRVDIVMLATVL 309
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE) HSP 1 Score: 194 bits (493), Expect = 2.180e-52 Identity = 101/209 (48.33%), Postives = 130/209 (62.20%), Query Frame = 1
Query: 139 AATAVRAGIGLGRGIYSIKELELALAVGRAPHEST-KESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
AA AVR GIG GR +Y++KELEL+LA APH +T +E KV GY +HDT Y N+ EG+ + M +GPD HE NH CR YSG++TC I GV T E + K +Y RS+N M F NF Y+L VINE+QN +YN++ L L +DGH ++S C ALW GRCFC KP++RVFD FGR+D V L+ +L
Sbjct: 952 AAIAVRGGIGFGRDVYALKELELSLARNAAPHATTTEEGKVVGYDAIFHDTRYKNF----EGDP--------IKREMRIGPDGHHENNHGPDCRKLYSGLTTCKDIGGVNLTRHESDHGVKVMYLRSINNMTFPNFTYSLSVINELQNRKYNRQLLDALLSRVDGHASPSMSGCQAALWTCGRCFCDKPLVRVFDCFGRLDLVCLSFVL 1148
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE) HSP 1 Score: 185 bits (469), Expect = 1.720e-51 Identity = 96/210 (45.71%), Postives = 126/210 (60.00%), Query Frame = 1
Query: 136 IAATAVRAGIGL-GRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
IA +A+ G GL G G+YSI L++ALAV PHES + KV GY W D T+D+ S + Y G+ VGPD H N +++C+ YSG +TC ++G+ EQ +SKK +Y RS+NTM F+ F + LRV+NE QN+ N+KTL T L ++ H + + C ALW GRCFC KPVMRVFD GRVD V L ML
Sbjct: 274 IAESAICCGTGLCGDGVYSIMALQIALAVDVPPHESAENFKVAGYDCVWQDNTFDDMSSEHV-------KYKMWQSGIFVGPDGPHAKNRSKECQRQYSGFTTCDELAGINLNPPEQDHSKKALYLRSLNTMTFSGFTFALRVLNERQNQGCNRKTLRTHLPSVTEHAKDIFASCEVALWRYGRCFCRKPVMRVFDCLGRVDIVMLATML 476
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE) HSP 1 Score: 166 bits (421), Expect = 2.160e-44 Identity = 91/209 (43.54%), Postives = 120/209 (57.42%), Query Frame = 1
Query: 136 IAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
IA +A+R GIG G G++SI L++ALAV P ES K +V GY WHDTT+D+ S + Y G+ H T SG +TC ++G+ EQ +SKK + RS+NTM F+NF + LRVINE Q++ +N+KTL T L +I HP+ + + C LW GRCFC KPVMRVFD GRVD V L +L
Sbjct: 289 IAESAIRCGIGCGDGMHSIMVLQIALAVDVPPRESAKNFEVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGILWAQ--THLTRRTTARSASNSGFTTCDELAGINLNPHEQDHSKKALCLRSLNTMTFSNFTFALRVINERQDQGFNRKTLRTLLASITEHPKDSFAGCEATLWRCGRCFCRKPVMRVFDCLGRVDIVMLATVL 488
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.340e-36 Identity = 70/203 (34.48%), Postives = 114/203 (56.16%), Query Frame = 1
Query: 151 VRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWH---DTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFL 750
+R+G+G G +S+K L++AL+ ++ K+PGY + ++ +YDN+ H Y G G+ +GPD HE NH C+ + G++ C I+G EQ++SKK + SV MGF F + + +INE++N + N+KT + + GHPRH L C + +W GRCFC+KP+MR FD+ G++ ++
Sbjct: 374 IRSGVGFGVAEHSVKALQIALSSDCVGGGVGEDGKLPGYSIDFNFKRTPSYDNYG----------HFYGGKRVGLWLGPDGPHEGNHQGSCQAKFGGLTRCRQITGTNCNPHEQNHSKKIKFLPSVTGMGFDTFTFNVTLINELENVKINRKTCTLAVSSASGHPRHRLPACRKEVWSCGRCFCSKPLMRSFDKLGKLCISYM 566 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig118.6.1 >prot_P-littoralis_Contig118.6.1 ID=prot_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=226bp MSFTCDVFCVHVCAIAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTback to top mRNA from alignment at P-littoralis_Contig118:28201..29078- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig118.6.1 ID=mRNA_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=878bp|location=Sequence derived from alignment at P-littoralis_Contig118:28201..29078- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig118:28201..29078- >mRNA_P-littoralis_Contig118.6.1 ID=mRNA_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=678bp|location=Sequence derived from alignment at P-littoralis_Contig118:28201..29078- (Pylaiella littoralis U1_48)back to top |