mRNA_P-littoralis_Contig118.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.6.1
Unique NamemRNA_P-littoralis_Contig118.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KPQ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ6_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.200e-60
Identity = 105/222 (47.30%), Postives = 136/222 (61.26%), Query Frame = 1
Query:   97 SFTCDVFCVHVCAIAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
            S T D   V V  +  +A R GIG G G++SI  L++ALAV   PHES K  KV GY   WHDTT+D+ S +          Y     GM VGPD  HE NH+++C+  YSG +TC  ++G+     EQ +SKK +Y RS+NTM  +NF + LRVINE QN+ +N+KTL T L ++  HP+ + + C  ALW  GR FC KPVMRVFD  GRVD V L  +L
Sbjct:    9 SVTLDALAV-VVQLPESATRCGIGGGDGVHSIMALQIALAVDVPPHESAKNFKVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGMFVGPDGPHEKNHSKECQRQYSGFTTCDELAGINLNPHEQDHSKKALYLRSLNTMTSSNFTFALRVINERQNQGFNRKTLRTLLASVTEHPKDSFAGCEAALWRCGRRFCGKPVMRVFDCLGRVDIVMLATVL 222          
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KGV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 8.190e-60
Identity = 101/209 (48.33%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  136 IAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
            IA +A+R GIG G G++SI  L++ALAV   PHES K  KV GY   WHDTT+D+ S +          Y     GM VGPD  HE NH+++C+  YSG +TC  ++G+     EQ +SKK +  RS+NTM F+NF + LRVINE QN+ +N+KTL T L ++   P+ +   C  ALW  GRCFC K VMRVFD  GRVD V L  +L
Sbjct:  108 IAESAIRCGIGCGDGVHSIMALQIALAVDVPPHESAKNFKVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGMFVGPDGPHEKNHSKECQRQYSGFTTCDELAGINLNPHEQDHSKKALCLRSLNTMTFSNFTFALRVINERQNQGFNRKTLRTLLASVTELPKDSFDGCEAALWRCGRCFCGKSVMRVFDCLGRVDIVMLATVL 309          
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.180e-52
Identity = 101/209 (48.33%), Postives = 130/209 (62.20%), Query Frame = 1
Query:  139 AATAVRAGIGLGRGIYSIKELELALAVGRAPHEST-KESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
            AA AVR GIG GR +Y++KELEL+LA   APH +T +E KV GY   +HDT Y N+    EG+         +   M +GPD  HE NH   CR  YSG++TC  I GV  T  E  +  K +Y RS+N M F NF Y+L VINE+QN +YN++ L   L  +DGH   ++S C  ALW  GRCFC KP++RVFD FGR+D V L+ +L
Sbjct:  952 AAIAVRGGIGFGRDVYALKELELSLARNAAPHATTTEEGKVVGYDAIFHDTRYKNF----EGDP--------IKREMRIGPDGHHENNHGPDCRKLYSGLTTCKDIGGVNLTRHESDHGVKVMYLRSINNMTFPNFTYSLSVINELQNRKYNRQLLDALLSRVDGHASPSMSGCQAALWTCGRCFCDKPLVRVFDCFGRLDLVCLSFVL 1148          
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.720e-51
Identity = 96/210 (45.71%), Postives = 126/210 (60.00%), Query Frame = 1
Query:  136 IAATAVRAGIGL-GRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
            IA +A+  G GL G G+YSI  L++ALAV   PHES +  KV GY   W D T+D+ S +          Y     G+ VGPD  H  N +++C+  YSG +TC  ++G+     EQ +SKK +Y RS+NTM F+ F + LRV+NE QN+  N+KTL T L ++  H +   + C  ALW  GRCFC KPVMRVFD  GRVD V L  ML
Sbjct:  274 IAESAICCGTGLCGDGVYSIMALQIALAVDVPPHESAENFKVAGYDCVWQDNTFDDMSSEHV-------KYKMWQSGIFVGPDGPHAKNRSKECQRQYSGFTTCDELAGINLNPPEQDHSKKALYLRSLNTMTFSGFTFALRVLNERQNQGCNRKTLRTHLPSVTEHAKDIFASCEVALWRYGRCFCRKPVMRVFDCLGRVDIVMLATML 476          
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.160e-44
Identity = 91/209 (43.54%), Postives = 120/209 (57.42%), Query Frame = 1
Query:  136 IAATAVRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFLTAML 762
            IA +A+R GIG G G++SI  L++ALAV   P ES K  +V GY   WHDTT+D+ S +          Y     G+       H T          SG +TC  ++G+     EQ +SKK +  RS+NTM F+NF + LRVINE Q++ +N+KTL T L +I  HP+ + + C   LW  GRCFC KPVMRVFD  GRVD V L  +L
Sbjct:  289 IAESAIRCGIGCGDGMHSIMVLQIALAVDVPPRESAKNFEVAGYDCVWHDTTFDDKSSEHA-------KYKMWQSGILWAQ--THLTRRTTARSASNSGFTTCDELAGINLNPHEQDHSKKALCLRSLNTMTFSNFTFALRVINERQDQGFNRKTLRTLLASITEHPKDSFAGCEATLWRCGRCFCRKPVMRVFDCLGRVDIVMLATVL 488          
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.340e-36
Identity = 70/203 (34.48%), Postives = 114/203 (56.16%), Query Frame = 1
Query:  151 VRAGIGLGRGIYSIKELELALAVGRAPHESTKESKVPGYGVTWH---DTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHETNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANFAYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFCAKPVMRVFDRFGRVDFVFL 750
            +R+G+G G   +S+K L++AL+         ++ K+PGY + ++     +YDN+           H Y G   G+ +GPD  HE NH   C+  + G++ C  I+G      EQ++SKK  +  SV  MGF  F + + +INE++N + N+KT    + +  GHPRH L  C + +W  GRCFC+KP+MR FD+ G++   ++
Sbjct:  374 IRSGVGFGVAEHSVKALQIALSSDCVGGGVGEDGKLPGYSIDFNFKRTPSYDNYG----------HFYGGKRVGLWLGPDGPHEGNHQGSCQAKFGGLTRCRQITGTNCNPHEQNHSKKIKFLPSVTGMGFDTFTFNVTLINELENVKINRKTCTLAVSSASGHPRHRLPACRKEVWSCGRCFCSKPLMRSFDKLGKLCISYM 566          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KPQ6_9PHAE1.200e-6047.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGV9_9PHAE8.190e-6048.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP3_9PHAE2.180e-5248.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXC8_9PHAE1.720e-5145.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCW5_9PHAE2.160e-4443.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W5_9PHAE4.340e-3634.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:28201..29078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size878
Hectar predicted targeting categorysignal peptide
Exons1
Cds size678
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789493.345443-UTR-P-littoralis_Contig118:28200..283071680789493.345443-UTR-P-littoralis_Contig118:28200..28307Pylaiella littoralis U1_48UTRP-littoralis_Contig118 28201..28307 -
1680789493.3673222-UTR-P-littoralis_Contig118:28985..290781680789493.3673222-UTR-P-littoralis_Contig118:28985..29078Pylaiella littoralis U1_48UTRP-littoralis_Contig118 28986..29078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789493.3590603-CDS-P-littoralis_Contig118:28307..289851680789493.3590603-CDS-P-littoralis_Contig118:28307..28985Pylaiella littoralis U1_48CDSP-littoralis_Contig118 28308..28985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.6.1prot_P-littoralis_Contig118.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 28308..28985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.6.1

>prot_P-littoralis_Contig118.6.1 ID=prot_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=226bp
MSFTCDVFCVHVCAIAATAVRAGIGLGRGIYSIKELELALAVGRAPHEST
KESKVPGYGVTWHDTTYDNWSLQVEGEGPNPHPYTGLSGGMHVGPDAIHE
TNHNEQCRLDYSGISTCAHISGVCATVAEQHNSKKPVYFRSVNTMGFANF
AYTLRVINEVQNEQYNKKTLGTFLGAIDGHPRHNLSICVEALWDSGRCFC
AKPVMRVFDRFGRVDFVFLTAMLLA*
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mRNA from alignment at P-littoralis_Contig118:28201..29078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.6.1 ID=mRNA_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=878bp|location=Sequence derived from alignment at P-littoralis_Contig118:28201..29078- (Pylaiella littoralis U1_48)
ACGAGCAATGTCACTATCTCGGCGCAGGACGGGTCAGACCGGACACGGTC AATATTTTCTACCTTCGCTGCCCGCGCTCACGTCCTTGTATATATGTCTT TTACCTGTGACGTTTTTTGCGTTCACGTTTGCGCGATTGCAGCAACAGCG GTCCGCGCCGGGATTGGACTCGGTCGCGGCATCTACTCGATCAAGGAGCT AGAACTCGCGCTGGCGGTCGGGCGAGCGCCGCACGAGAGTACTAAGGAAT CCAAGGTTCCTGGGTACGGTGTGACCTGGCACGATACGACGTACGACAAC TGGTCGCTGCAAGTTGAAGGGGAAGGGCCAAATCCCCACCCGTACACAGG TCTATCGGGCGGAATGCATGTAGGACCGGATGCCATCCATGAGACCAACC ACAACGAGCAGTGTAGGCTTGACTATAGCGGCATATCGACATGTGCACAC ATTAGCGGTGTTTGTGCCACCGTGGCAGAGCAGCACAACTCAAAGAAACC GGTGTATTTCCGGTCGGTCAACACCATGGGCTTTGCTAATTTTGCCTACA CGCTTCGTGTAATCAACGAAGTCCAGAACGAACAGTACAACAAGAAAACC CTTGGCACGTTCCTGGGGGCTATTGACGGCCACCCACGACACAACCTCTC CATCTGCGTGGAAGCCCTTTGGGACAGTGGGAGATGCTTTTGCGCGAAGC CTGTCATGCGTGTGTTTGACCGCTTCGGAAGGGTGGACTTTGTCTTTCTT ACCGCTATGCTCCTGGCCTGAGTGAAAGCGGTCTCCGATAGAAGATTTGT TGACATTTTGATGGGTGACAGGGTTGGTAGAGTGCGACAGCACTGCACTA CGTTGAGTCGTTGACACTGGTGTGTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:28201..29078-

>mRNA_P-littoralis_Contig118.6.1 ID=mRNA_P-littoralis_Contig118.6.1|Name=mRNA_P-littoralis_Contig118.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=678bp|location=Sequence derived from alignment at P-littoralis_Contig118:28201..29078- (Pylaiella littoralis U1_48)
ATGTCTTTTACCTGTGACGTTTTTTGCGTTCACGTTTGCGCGATTGCAGC
AACAGCGGTCCGCGCCGGGATTGGACTCGGTCGCGGCATCTACTCGATCA
AGGAGCTAGAACTCGCGCTGGCGGTCGGGCGAGCGCCGCACGAGAGTACT
AAGGAATCCAAGGTTCCTGGGTACGGTGTGACCTGGCACGATACGACGTA
CGACAACTGGTCGCTGCAAGTTGAAGGGGAAGGGCCAAATCCCCACCCGT
ACACAGGTCTATCGGGCGGAATGCATGTAGGACCGGATGCCATCCATGAG
ACCAACCACAACGAGCAGTGTAGGCTTGACTATAGCGGCATATCGACATG
TGCACACATTAGCGGTGTTTGTGCCACCGTGGCAGAGCAGCACAACTCAA
AGAAACCGGTGTATTTCCGGTCGGTCAACACCATGGGCTTTGCTAATTTT
GCCTACACGCTTCGTGTAATCAACGAAGTCCAGAACGAACAGTACAACAA
GAAAACCCTTGGCACGTTCCTGGGGGCTATTGACGGCCACCCACGACACA
ACCTCTCCATCTGCGTGGAAGCCCTTTGGGACAGTGGGAGATGCTTTTGC
GCGAAGCCTGTCATGCGTGTGTTTGACCGCTTCGGAAGGGTGGACTTTGT
CTTTCTTACCGCTATGCTCCTGGCCTGA
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