mRNA_P-littoralis_Contig1171.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1171.12.1
Unique NamemRNA_P-littoralis_Contig1171.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1171.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1171contigP-littoralis_Contig1171:39939..43481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1966
Hectar predicted targeting categoryother localisation
Exons3
Cds size1026
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.0939722-UTR-P-littoralis_Contig1171:39938..401631680789491.0939722-UTR-P-littoralis_Contig1171:39938..40163Pylaiella littoralis U1_48UTRP-littoralis_Contig1171 39939..40163 +
1680789491.1168504-UTR-P-littoralis_Contig1171:41189..413921680789491.1168504-UTR-P-littoralis_Contig1171:41189..41392Pylaiella littoralis U1_48UTRP-littoralis_Contig1171 41190..41392 +
1680789491.1276891-UTR-P-littoralis_Contig1171:41931..421601680789491.1276891-UTR-P-littoralis_Contig1171:41931..42160Pylaiella littoralis U1_48UTRP-littoralis_Contig1171 41932..42160 +
1680789491.1414726-UTR-P-littoralis_Contig1171:43198..434811680789491.1414726-UTR-P-littoralis_Contig1171:43198..43481Pylaiella littoralis U1_48UTRP-littoralis_Contig1171 43199..43481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789491.1070385-CDS-P-littoralis_Contig1171:40163..411891680789491.1070385-CDS-P-littoralis_Contig1171:40163..41189Pylaiella littoralis U1_48CDSP-littoralis_Contig1171 40164..41189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1171.12.1prot_P-littoralis_Contig1171.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1171 40164..41189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1171.12.1

>prot_P-littoralis_Contig1171.12.1 ID=prot_P-littoralis_Contig1171.12.1|Name=mRNA_P-littoralis_Contig1171.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp
MLQSSSQSSSKPRDMRLGHGGDHGTAEPGCYFREMVSSDRTYDGNRPNHR
QGDADSGWAGGDHPGRVGMLRRNEPERATRDPAHAAGGGGGDPRRPEVGH
HSCPFVQDRQHYRGTPPRCSPRSGAGYGGGGNDEGRNWIECSANAESQYD
VNTRRSRHDDGGGNGDRGRGRGNHAYGDAVRGREGYSSRSDHGIQAVRVS
TEGIKADSRMPLDLSGKTGSAPAAGCVDLIYLAVGGTTGVRELGCKLMLV
DDTTHLNGPVSTVQGGITLKTSPTTATTTAKPVQAGGGSLTASKAVTMKH
RGLLRGIGDDPTAGNDTTIAGFVRCSKMPLRETAATAVAST*
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mRNA from alignment at P-littoralis_Contig1171:39939..43481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1171.12.1 ID=mRNA_P-littoralis_Contig1171.12.1|Name=mRNA_P-littoralis_Contig1171.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3543bp|location=Sequence derived from alignment at P-littoralis_Contig1171:39939..43481+ (Pylaiella littoralis U1_48)
GGAAATTTTCCTCCATGGAAAGAAATTTTCCTCCGAAGGAGGTACAAGCG
GCAGGCCCCGTGAAACTCGTACAGACGGCAGGGGAGGCGACGGTGTTACG
GGACCAGGCGGGAACGACGTAGGTTCCCGCCACTTCTTGCAGGACCAACG
CGCCTACGCCAGCACTCCCATGGCCGCGGGCCGCGGGTAAACGATGGCGG
TGGCGGCAATGAGGTACAACAACACATGCTCCAGTCATCCAGCCAGTCGT
CCAGCAAACCAAGGGACATGCGACTGGGTCACGGTGGGGACCACGGCACT
GCCGAACCAGGTTGTTATTTCCGCGAGATGGTTTCCTCGGACAGAACTTA
CGACGGCAACCGTCCAAACCACAGACAAGGAGACGCTGACAGCGGGTGGG
CCGGTGGAGACCATCCCGGGAGGGTTGGCATGCTACGCCGGAACGAACCA
GAAAGGGCCACACGGGACCCCGCGCATGCAGCTGGGGGGGGAGGGGGCGA
TCCGAGGCGCCCTGAGGTCGGGCACCACTCTTGTCCTTTTGTGCAGGACC
GGCAACACTACCGCGGCACGCCACCTCGATGCTCCCCACGCAGCGGTGCG
GGATACGGCGGCGGCGGCAACGACGAGGGACGAAATTGGATCGAGTGTTC
CGCTAACGCCGAGAGCCAATATGACGTGAACACTCGAAGGTCGCGACACG
ACGACGGTGGGGGAAACGGCGATAGGGGACGAGGTCGGGGAAACCATGCC
TACGGAGATGCGGTGCGAGGACGGGAAGGCTACAGCAGCAGGTCCGATCA
CGGGATTCAGGCAGTAAGGGTTTCGACGGAGGGGATAAAGGCAGACTCGA
GAATGCCTCTAGACCTTTCAGGGAAAACCGGGAGCGCTCCGGCAGCAGGA
TGCGTCGATCTGATTTACCTGGCCGTCGGGGGCACGACGGGGGTGCGCGA
GTTGGGGTGCAAGCTGATGCTGGTGGACGATACTACACATTTGAACGGGC
CGGTGTCGACCGTGCAGGGAGGCATAACATTGAAGACTTCTCCAACAACA
GCAACGACTACGGCGAAGCCCGTTCAGGCAGGGGGGGGCAGCTTGACCGC
GTCAAAAGCGGTTACGATGAAGCATCGCGGCCTTCTGCGCGGAATCGGGG
ACGATCCGACAGCAGGGAACGATACCACCATAGCGGGTTTCGTGAGATGC
AGCAAGATGCCACTACGGGAGACGGCGGCTACAGCCGTGGCTTCGACATG
AAAGGTGCCGGCTGTTGTGACGAAGTCTTCAACCATGTGCGACAGGGGCA
AGAGCCGAGATGTTCATCGGGACAATTAGATGTCACGGATGCACCGCGCA
GCGAAGGTCTTCAAGGAAACTACAGGGACGCATCGCGCAACGGACGTGTT
CAAGGAAGCTACGGAGCGGGCGACATGGCGGAAGCGGGGAGCGTCGAAAC
ACTGGCGAGTATCGTCTAACAAATACAGTCTGAAGACAAACCGATTGTAG
ACTGTCTTCGCGTATACCCCATCATCAGTTTAAAAGAACTTTCGCATTAT
ATTACAGTATCATCATTCAACCATAATTTTTGAATGAGTTTGTTTTTATG
TCATGCATCCTGGACGCCAGCAACAGCGGGACAGGTGATCAACGCCTATA
AAAACACAAAGTGTTTTTCTGTTTTTCTACAATGAACTCGTGTGTCCTTT
TTTCAATCATCTCTACCGAGGATATGTCACCGTACTACCCTCCCATCAAG
TACAAGTACCACATATGAATATTTTTCTAACATTAGTCTTAGAACTGGGT
CCAACAAGTCGACCTTCCGCTCACAACCGTCTGATCACCGATGGCCATTT
ACCGGCGACGTTCGGCTTCGATCCGTGCTTACGACGACCCTTTGTGCATA
TTATCCTCGATATATGAGTGCCGCGTTTTCAAATAACACTCTATGCCCCC
TCCCCACACTTGCTCCGTTGCCGTGTTACCACATTCTACCCAGTCAGGAC
AGAGGAAGGGGATGGAGACGGTTTCAGCTTCCACGAGTTCCAGCGACGCA
TTGACCGGTGCGCTAAACCGGAGGACCCGACGGAAGGAGAGCTGAAGATG
TGGTTCGACTGCTACACCAAACTGATTCAGCACGTGAACAAGAATCGCAG
GCTCTCTCTCACCACCGCCCTCGAAACCAAATCGGGCTTCGTCAAGAAAT
GCAACAGTGGGACGGCGGGCAGGTACGCAAACGATATCTCGAATCACAGT
AACACTAAAGGTATACAGTATGATGACCCGTGCTCGTTTGTCGCCCGTGC
AGGAAAAGGGGTATGTTGGCTTGTATCGCATGGCACCTGCAGAGTTGAGC
ATCAGCAAACAACTATCTGTGGATTCAGTTAAAAAACGACAGTGGGAGGT
ATTTTTAAACAAGCGCCCGAACGAAGTTTTTGTCATTAAACGCCCCCATA
ATGTACGCATTGGACGCCAATTGCGTACTTTGTATCAATATACATACCTG
GTATGTCTTCGTACTCTTCAGTGTCCGAACCGCTTCTTTCACCACAAAAT
TCCGAAAACAAACCATATGAATGCATCTTCATATCCTTCACGAAATGAGA
ATAGCTTACATCTACATATGGTGCGCAAAGGACAAGTACGCCGTGTGCAT
CCAGTGTGAAGTACTAGTGGTCCGGGGTTGAGTTACCGTGTGCGTTTGGG
GGCCGCTTTTGAAATTACTGCGTTCAGCCGCGTGCGTTGCTGTTTGGTGG
GTATCAGCAGAACTGCTATGAAGCAGCGCTGCTGCTGCAGAACAGAGCTG
GTGGTGTTTTTGTGTGCGTGTGCGTCAGCACAACCAGCACAAAACGCCTA
TAATCATTATTCACACAAAGGGCCCCGAATAATGACGCGCCTCCGACAAA
ATAGCTGTGCGCACAGGCCACAGGCTGCGGTGAACCCAGCAGCAGGGGTA
GATCCTACTTACCTCATCAGTTCCTTGATCGTAGCGATCTGTGCTGAACT
GGCGTCAAAGTGTGTCGAAATGAGGCCATTATCTCGTTATCTTTCACACA
CACAGACGGAGGCCAAAAACCTCAATAATTAAATTCAGGCACCCATGTCT
CCGACCGATTTTATTTTAGTCAAAGTATTTTTTATTCGCAAATACACACA
CCTGCACGTACAAAAAAGTCGGTGTGAATTTCAAGCAGTTCGAATAGGAA
CTCACACCTCGCTTCGCGAAATGAAACACACTTACAAACACGTTTCCCTT
TTAATTTCAGGTGGGTCAGTATGTACGAGACCATCCACGCTTGCACCTCG
GTTGCTTGCTGCAACGACGGGACTACCGTCAAAGAGGCCTTGCGAAAACA
CCCTATCTCGAAAGTAAGATGAACCGGGCAACTCCAACTATGTGGTTCAT
GAACACCAACAAGGAGCAAACTTGGAAAGGGTTTTCGTGAACATCGACGA
CGATCACGTTGATGGGTCTGCGGGGTTAGACAAGTTTCTGTGCGTGACAT
AATGTGTCGTGGAAGATGACGACACGTGCCGGCTTATTTTAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1171:39939..43481+

>mRNA_P-littoralis_Contig1171.12.1 ID=mRNA_P-littoralis_Contig1171.12.1|Name=mRNA_P-littoralis_Contig1171.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig1171:39939..43481+ (Pylaiella littoralis U1_48)
ATGCTCCAGTCATCCAGCCAGTCGTCCAGCAAACCAAGGGACATGCGACT
GGGTCACGGTGGGGACCACGGCACTGCCGAACCAGGTTGTTATTTCCGCG
AGATGGTTTCCTCGGACAGAACTTACGACGGCAACCGTCCAAACCACAGA
CAAGGAGACGCTGACAGCGGGTGGGCCGGTGGAGACCATCCCGGGAGGGT
TGGCATGCTACGCCGGAACGAACCAGAAAGGGCCACACGGGACCCCGCGC
ATGCAGCTGGGGGGGGAGGGGGCGATCCGAGGCGCCCTGAGGTCGGGCAC
CACTCTTGTCCTTTTGTGCAGGACCGGCAACACTACCGCGGCACGCCACC
TCGATGCTCCCCACGCAGCGGTGCGGGATACGGCGGCGGCGGCAACGACG
AGGGACGAAATTGGATCGAGTGTTCCGCTAACGCCGAGAGCCAATATGAC
GTGAACACTCGAAGGTCGCGACACGACGACGGTGGGGGAAACGGCGATAG
GGGACGAGGTCGGGGAAACCATGCCTACGGAGATGCGGTGCGAGGACGGG
AAGGCTACAGCAGCAGGTCCGATCACGGGATTCAGGCAGTAAGGGTTTCG
ACGGAGGGGATAAAGGCAGACTCGAGAATGCCTCTAGACCTTTCAGGGAA
AACCGGGAGCGCTCCGGCAGCAGGATGCGTCGATCTGATTTACCTGGCCG
TCGGGGGCACGACGGGGGTGCGCGAGTTGGGGTGCAAGCTGATGCTGGTG
GACGATACTACACATTTGAACGGGCCGGTGTCGACCGTGCAGGGAGGCAT
AACATTGAAGACTTCTCCAACAACAGCAACGACTACGGCGAAGCCCGTTC
AGGCAGGGGGGGGCAGCTTGACCGCGTCAAAAGCGGTTACGATGAAGCAT
CGCGGCCTTCTGCGCGGAATCGGGGACGATCCGACAGCAGGGAACGATAC
CACCATAGCGGGTTTCGTGAGATGCAGCAAGATGCCACTACGGGAGACGG
CGGCTACAGCCGTGGCTTCGACATGA
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