mRNA_P-littoralis_Contig117.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.67.1
Unique NamemRNA_P-littoralis_Contig117.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:236190..237915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.5013433-CDS-P-littoralis_Contig117:236190..2362381680789486.5013433-CDS-P-littoralis_Contig117:236190..236238Pylaiella littoralis U1_48CDSP-littoralis_Contig117 236191..236238 -
1680789486.515376-CDS-P-littoralis_Contig117:236731..2368391680789486.515376-CDS-P-littoralis_Contig117:236731..236839Pylaiella littoralis U1_48CDSP-littoralis_Contig117 236732..236839 -
1680789486.527762-CDS-P-littoralis_Contig117:237822..2379151680789486.527762-CDS-P-littoralis_Contig117:237822..237915Pylaiella littoralis U1_48CDSP-littoralis_Contig117 237823..237915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.67.1prot_P-littoralis_Contig117.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 236191..237915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.67.1

>prot_P-littoralis_Contig117.67.1 ID=prot_P-littoralis_Contig117.67.1|Name=mRNA_P-littoralis_Contig117.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
KHRRICNLEGPRISSQGRLYWKDARAFPADKISAMDLRDAMGVGDDTVGG
VQDAPFSPVRRGPIFTKETIGGDDANSMDTDED
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mRNA from alignment at P-littoralis_Contig117:236190..237915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.67.1 ID=mRNA_P-littoralis_Contig117.67.1|Name=mRNA_P-littoralis_Contig117.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1726bp|location=Sequence derived from alignment at P-littoralis_Contig117:236190..237915- (Pylaiella littoralis U1_48)
AAGCACCGCCGAATCTGCAACTTGGAGGGACCTCGGATCTCATCACAAGG
AAGACTTTATTGGAAGGACGCGCGGGCATTCCCCGCCGACAAGGTGAGAT
CCGCGGAAATCCATGCGCCCTCGAAAGGCGGGGCTGCTTCGCGCCAATTC
TCGAGTACCCTTAGCGCCACCCGTGAGGCCTTCGGATTAGTTGATGATTA
CCCCTACCACACTCAACATGCTTATAGACCATATCTCAGAGAGCTTCCCA
TGCCAAGCCGTTTGTAAATCCAACCCGTGTGGACCGAGAGCCAAGTGTAG
TTCGGAATCTGAAAATTCAGATTATTGGGTGACAGCGGGGCAGCGGGGCA
AACGCCCGGACCTCCATTTTTTACACGCGTGTGCAGCCAACAACAAAGTT
GCTACCGGCGGCACGATCATACGTGCCGCACATCGCGCGTTGCTGTTGTC
AGCAGTCGGCGAGTACAACGCCTGATCCTGCCCGTAGTTTTTGGTAGTTG
TTCCAAAAATCGAGGCGTAGGAGTGGGTGACAAAACCATTCTGTACAGCA
CCAAACCATTCCTGCACAGCAGCTAGGGTGAACGCCTTGCGTGCGCACCA
TCCAGGCGCTCATTCCAACCAGACCACCCTAGCCAGGGCATACGTGGCCG
TGCAATAGCCCAACATTTTTCGTGCGTGTTTGGTTAGGAGTAAGGGTTTA
GGCAGATGATTAATCCGCTTGTTTTTTTTCCAGCGTCGATGCTGGTCGTA
CACTCACGAGCAATGATGTGGCGGTATGTAGGTGTCCCTGCTGAGCTGCT
GTAGTTATAGGCCAAGAAGCACGCCCATCTACTACTGATGCATCCGTTGT
TTTTGTAAGCGTGTGTGCATAAATTATGGTTACATTGTGATGCTTTATCC
TGTTCCGTATTTTCGCAAGATAGTAAGATGTGCCCATCATGCCACAGTAG
CAGCGCCGGGGGTAGGGCTCGTAGCCCTCTTTTTTGGTGATGTGATTTCG
TGGCTCTCTGTGTACAGGTCCTGCTAAATCCTGCCGTCTTGTGATAACCT
GTTTTCGCTGCCATGTTGCTTAGCAGATTTCGGCCATGGACCTACGGGAT
GCTATGGGAGTCGGAGATGATACGGTTGGAGGTGTGCAGGATGCTCCATT
TTCGCCAGTCAGAAGAGGACCTATTTTCACAAAGGCAAGTCCATGGCGCC
TCGTCATCATTCACGCTAGCGTGCCCACCGCGGTGAGCTTTCCTATAGAT
TTGTCGCCGGCATTCTGTGGTTTGAACGGTGAACGGAATTATGGACCTAA
ATACGATACATAGGCACAGATAGCCCACATGCCGAGATGGAGAGTCAAAG
TGTTTGGAGAAACCGCAGAAAGGGGGTATTGTAGTGAGTGCCATAAGGAG
CGCGAGAACTGGACAGCAGTACAGGCAGCAGTAGGGGCATCAGCACAGGC
GTCGTACAGGGGTAGCAGGCTTCGTATGTATAAAGGACTCCGGTGTCCCA
GATTTATCGTGGGTTGATATACTAGCACTGCTGTTAGTTGCGTAAGGGTT
GGGTTTTCCGCATATATATCCAACATGCCGTAGAGTATCCTAGCTTTGTT
GGCCTTGCGCATGTGATTCGGCAAGGTTCTACGGTTCCTAACTTCTTATT
CTCCGTATTTCGTTATACTTCATACAGGAGACGATTGGCGGTGACGACGC
TAATAGCATGGACACCGACGAAGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:236190..237915-

>mRNA_P-littoralis_Contig117.67.1 ID=mRNA_P-littoralis_Contig117.67.1|Name=mRNA_P-littoralis_Contig117.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig117:236190..237915- (Pylaiella littoralis U1_48)
AAGCACCGCCGAATCTGCAACTTGGAGGGACCTCGGATCTCATCACAAGG
AAGACTTTATTGGAAGGACGCGCGGGCATTCCCCGCCGACAAGATTTCGG
CCATGGACCTACGGGATGCTATGGGAGTCGGAGATGATACGGTTGGAGGT
GTGCAGGATGCTCCATTTTCGCCAGTCAGAAGAGGACCTATTTTCACAAA
GGAGACGATTGGCGGTGACGACGCTAATAGCATGGACACCGACGAAGAC
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