mRNA_P-littoralis_Contig117.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.51.1
Unique NamemRNA_P-littoralis_Contig117.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.51.1 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 6.670e-51
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 2 
Query:    2 GEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSVVAHTTRAPPPGATVNPYADGLVWPENAPRTPGSR 301
            GEIVVPKV+G IVVKGPNARGE+VR VHGV PG+VTSLTLVADYITTR DGQ TSDEDR SARKSVVAHTTRA PPGAT++PYAD LVWPENAPRT GSR
Sbjct:   98 GEIVVPKVHGLIVVKGPNARGEKVRAVHGVRPGNVTSLTLVADYITTRNDGQATSDEDRDSARKSVVAHTTRAAPPGATIDPYADRLVWPENAPRTTGSR 197
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BLAST of mRNA_P-littoralis_Contig117.51.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.390e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:   62 GEEVRVVHGVGP-GDVTSLTLVADYITT-RKDGQPTSDEDRHSARKSVVAHTTRAPPPGATVNPYADGLVWPENAPRTPGSR 301
            GEEVR V GV P G  +S TL ADYITT R D QP SD+DR SARK VVAHTT+  PPGA+++PYAD LVWPENAPRTPGSR
Sbjct:   54 GEEVRAVDGVRPRGVASSFTLGADYITTTRNDQQPVSDKDRDSARKLVVAHTTKPAPPGASISPYADRLVWPENAPRTPGSR 135
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BLAST of mRNA_P-littoralis_Contig117.51.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.240e-9
Identity = 41/97 (42.27%), Postives = 49/97 (50.52%), Query Frame = 2 
Query:   14 VPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSVVAHT-TRAPPPGATVNPYADGLVWPENAPRTPGSR 301
            +PK NGR++VKGP ARGE                             Q T+  DR SAR+SVV    +R PP GA  NP+AD LV  + APRT GSR
Sbjct:  289 IPKENGRMIVKGPMARGE-----------------------------QATTRVDRDSARQSVVDRAESRMPPIGAPHNPFADSLVLSDTAPRTTGSR 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUP9_ECTSI6.670e-5186.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRU8_9PHAE3.390e-2971.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI6.240e-942.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:142663..142965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.7299366-CDS-P-littoralis_Contig117:142662..1429651680789486.7299366-CDS-P-littoralis_Contig117:142662..142965Pylaiella littoralis U1_48CDSP-littoralis_Contig117 142663..142965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.51.1prot_P-littoralis_Contig117.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 142663..142965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.51.1

>prot_P-littoralis_Contig117.51.1 ID=prot_P-littoralis_Contig117.51.1|Name=mRNA_P-littoralis_Contig117.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
RRDCRPQGQRADCSEGAERPGRGGTSGPWRRARGRDIPHSRGGLHYNPEG
WATYLGRGPPQCSQVGGRPHHQGASAWSNRQPLRRWACLARECPAYAGLT
*
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mRNA from alignment at P-littoralis_Contig117:142663..142965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.51.1 ID=mRNA_P-littoralis_Contig117.51.1|Name=mRNA_P-littoralis_Contig117.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig117:142663..142965+ (Pylaiella littoralis U1_48)
CGGCGAGATTGTCGTCCCCAAGGTCAACGGGCGGATTGTAGTGAAGGGGC
CGAACGCCCGGGGAGAGGAGGTACGAGTGGTCCATGGCGTCGGGCCCGGG
GACGTGACATCCCTCACTCTCGTGGCGGACTACATTACAACCCGGAAGGA
TGGGCAACCTACCTCGGACGAGGACCGCCACAGTGCTCGCAAGTCGGTGG
TCGCCCACACCACCAGGGCGCCTCCGCCTGGAGCAACCGTCAACCCCTAC
GCCGATGGGCTTGTCTGGCCCGAGAATGCCCCGCGTACGCCGGGCTCACG
TAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:142663..142965+

>mRNA_P-littoralis_Contig117.51.1 ID=mRNA_P-littoralis_Contig117.51.1|Name=mRNA_P-littoralis_Contig117.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig117:142663..142965+ (Pylaiella littoralis U1_48)
CGGCGAGATTGTCGTCCCCAAGGTCAACGGGCGGATTGTAGTGAAGGGGC
CGAACGCCCGGGGAGAGGAGGTACGAGTGGTCCATGGCGTCGGGCCCGGG
GACGTGACATCCCTCACTCTCGTGGCGGACTACATTACAACCCGGAAGGA
TGGGCAACCTACCTCGGACGAGGACCGCCACAGTGCTCGCAAGTCGGTGG
TCGCCCACACCACCAGGGCGCCTCCGCCTGGAGCAACCGTCAACCCCTAC
GCCGATGGGCTTGTCTGGCCCGAGAATGCCCCGCGTACGCCGGGCTCACG
TAG
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