mRNA_P-littoralis_Contig117.39.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig117.39.2 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI) HSP 1 Score: 1025 bits (2651), Expect = 0.000e+0 Identity = 781/1609 (48.54%), Postives = 938/1609 (58.30%), Query Frame = 1
Query: 784 VARYPNTDHAQQLQEQMTADSVSAQRARENERRPAVTSTTL-SQQGESLPHAREAAKGGPGRSASTAIERKAEYAYQLREQMAADEAARQAMETERQKKASPSSSAI-PASGREEAYARGGGRSIRVSGPVKDAKAEYARQLREQMAENENAQRAAXXXXXXXXXXXXXXXXXXXXXXGREARRKRSNTKYAEQLRAQIVAQKETNQFQQGLIPSYVDPSKGNYQQ----------QQRQGPGEDLMEERRRGLEWQRSWGDKHDGQGGNEAERSRRRVEGEQTISSSRRGTYNPLAMERQKRVDRQREYAEALRRDMATPKVDSLGRPVEDITSPTRTRLRLVKSNNCNYNEN-SVEPHDRGGSAPDGNRFLQPGPRRQAGGDTRGWSQNQEQQLQRQPLEREYLREYPSQSGAWPLSQDQGRRMYAGDDQQHSRRPPVPGTHHAVCDYNS---------DQRRPVEGRQG-ARWIGDEGNIARPPLPFQGGLTS-DSQGHGWGDGHGQVEQRGNWGMGG----PKSGGREF-LSAGTRASGHLYPRVHHDGQPLEHGGLQEYRRLGPVAPPGGAPGXXXXXXXXARVVSTKASTMHNPVEPEELARLQAKKDAYRKDLETQMAEHKKLVDQRKRGAPGSKEAEVFHLQEAMEERNERNKLAPGYEMGPLGVAVMKDKYSTTGRGQRSPPKKVSAAVELLGSLGR-----------PIG----LTNADIFGSGETGESSSLLPPPEGAAGGVVDSNGV--PSRRGSGLRELLGIETDAKRDREKSRVQAEALKKQVEDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEKRXXXXXXXXXXXLERKYAKERAVEAPLGQASG-PSKPMGPAFPVKKSTAVNSPRPMETPREVKYKTIVAGGCLLVRLLPRPVKGLHS---------PSISPSTPKTNRHPNRVIPCPHPAPSSDN--PAPSDEVSLEKLRTELLKQKQVTEVLRHEVDQQEAERRKLLDIARCAKESEAAVLRATYERRASQHARDKEVGYTGSVTASNELWRVPPPPVIKDVEGEGGTSSPKALQWVDSADAAEKGCIGKHRDGRRLEMEGTAEDRLLLAGLRRLNDCDRTPGEGCGPASPTHGELGGGSTFQERVPGARAWSRGVASNSGDGCD-KDFLLYRDTASPGGIRAESRYVFPDGSVRRGFETPGRTALVSD-------TPMPLVGTSRMASADLSLAMGIEALGGGSGEGGSSDSINETPGRRRRTGRSGTCTNNGGAYRGPGAVSGASWAPGGRPPRAYVPFLNLPASNGMANRNSGKALRRRQDSHGLGRVSGSVNSSSNSDDSPSPFLF--THSVSKGGRNRRRGRPLAGVGGLLVSPGRAMLTGPGRPGTGASSSLRKMFGDTDSEYGNPGRSRRRFDSGGVCGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVEFLRRRAEAKLRSLDRQEAANLVEEEALDLLVASSPARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMYSSRKKRPGTNQSEMSMLGDSRWAQ 5406
VAR P++D+A+ ++EQM A +AQR ++ RRP + T+ + +G +LPHA+ + S+ I+RKAEYA QLREQMA+DEA R+AME ER+ K S SSA PA G E RGG V+ V+ AKAEYA+QLREQMA ENAQRAA GR+ARR+RSNT+YAEQLRAQI AQK NQ QQ L+ + V P K ++Q QR G + + E +RS D H QG R E+ IS SR NPLA RQ+RV+ QREYAEALRRDMA PKVDSLGRP+ DITSP+RTRLR S N N N + G SAP LQPGPR QAG R WSQ QP EREYLRE+ + GAWP SQ Q + Y + +HSR+PPVPGTH+ N D+ GR+G A+W+ D + + P P + + + +G WG G +RG G P+ GG+ + ++ + GH R H G +H Q+ R GP PPGGAP V STKASTMHNPV+PEELAR+QAKK++YR+DLE QMAEH KL DQRK+G PGSKEAEVFHLQ+AMEER+ERNK+APGYE+GPLGV V+KD YSTTGRGQRSP K + A G+ G P+G T++++FGSG G SSSLL P G A V D+ GV PSRRGSGLRELLGIET+A+RDREKSRVQAEALKKQVEDN XXXXXXXXXXXXXXXXXXXXXXXXXXXX E E++ LERKYA+ERA E PL QAS P+ FP KK SPRP+++PRE++ +++ LP +G S + PS +T P PH P+S P + VS+EKLRTEL KQKQ+TEVLRHEV QQEAE+RKL+DIAR AKESEAA LRA YERRAS+H KE+G G NELWRVPPPP + EGEG T SP A + +S AA+ + R+ + + TAEDRLLLAGLRRL+D +R PG GC +LGG STF+E+VPGARAWS G SNS DG D K L SPGGIRAESRYVFPDGSVRR ETP V D PMPLVGTSR+ASADLS A+GI++L GG G G + D + + RRR TGR+G+ N GG +RGPGA GA WAP GRPPRA+VPFLNLP SNG AN N+ K GR + S +SD S SP+ +S + GR++RRGRPLAG+GG+LVSPGRAMLTGPGRPGTGA+S R +G+T S + +SR+R G G TDVEFLRRRAEAKL+SLDR+EAA +E+ L+LLVASSPAR RSLMYS RKKRPGTN+SE SMLGDSRWA+
Sbjct: 4 VAR-PDSDYARHVREQMMAGVAAAQRGNDDARRPGPVAATIPADRGRTLPHAQPVETEDGTTTVSSTIDRKAEYASQLREQMASDEATRKAMEIERKCKVSTVSSAAGPAIGEHEEGLRGG-EDEWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGRKARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDMFEQGGYEKYYQQLHQRLLGGVSSFDYQSGEPERRRSQIDDHRSQG---------RPRTEEKISLSRGEVSNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNYGNSAPREAGHLQPGPRPQAGEHVRDWSQ--------QPFEREYLREHATPYGAWPSSQAQSQGPYEVGEHRHSRQPPVPGTHYEAYGSNPKGYPSRGDYDELEYPTGRRGNAKWVADGISASGLPPPRRDFVDDGERRGERWGT-SGPYPERGGGYPGNRTRLPEFGGKSWDITNPSVGGGH--DRNVHPGPIRDHREQQDRRYFGPRGPPGGAPAAGGGVG----VRSTKASTMHNPVDPEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGVPGSKEAEVFHLQKAMEERSERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATGNQGLSASSAIDPSSGPVGESTPQTSSELFGSGHDGTSSSLLAPSGGGAD-VSDAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALKKQVEDNKVRRDIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDARV-----------------------------EREQKE----------LERKYARERAAEEPLVQASSNPANLPVSEFPTKKGGGTRSPRPIKSPRELEVNEKRHEDSVMMPHLPGRERGTPSIEAQSDNGEQMVEPSKIETKGPVQSDGPSPHQPPASPRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGGAEGNELWRVPPPPSTEGAEGEGRTPSPSARRRAESNFAAKNAYVAN----RKFDTDETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAVSNSRDGRDSKRRPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPAAEGGVGDXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGG-GNGAAGDDVEKASWRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVSNGKANGNNSKE----------GRWA-----SRDSDGSDSPYFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGETGSGHHRRRQSRQRARREGADLGS-----------TSIGDEEFSDDCESVGSGSTDVEFLRRRAEAKLKSLDRREAAEKAKEKELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVRLALPTHNTARRTISAASSSSS--RSLMYSRRKKRPGTNKSESSMLGDSRWAE 1513
BLAST of mRNA_P-littoralis_Contig117.39.2 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE) HSP 1 Score: 962 bits (2487), Expect = 0.000e+0 Identity = 775/1642 (47.20%), Postives = 927/1642 (56.46%), Query Frame = 1
Query: 784 VARYPNTDHAQQLQEQMTADSVSAQRARENER-RPAVTSTTLSQQGESLPHAREAAKGGPGRSASTAIERKAEYAYQLREQMAADEAARQAMETERQKKAS-PSSSAIPASGREEAYARGGGRSIRVSGPVKDAKAEYARQLREQMAENENAQRAAXXXXXXXXXXXXXXXXXXXXXXGREARRKRSNTKYAEQLRAQIVAQKETNQFQQGLIPSYVDPSK------GN---YQQQQRQGPGEDLMEERRRGLEWQRSWGDKHDGQGGNEAERSRRRVEGEQTISSSRRGTYNPLAMERQKRVDRQREYAEALRRDMATPKVDSLGRPVEDITSPTRTRLRLVKSNNCNYNENSVEPHDRGGSAPDGNRFLQPGPRRQAGGDTRGWSQNQEQQLQRQPLEREYLREYPSQSGAWPLSQDQGRRMYAGDDQQHSRRPPVPGTHHAVCDYNS---------DQRRPVEGRQG-ARWIGDE-GNIARPPLPFQGGLTSDSQGHGWGD-------GHGQVEQRGNWGMGGPKSGGREFLSAGTRASGHLYPRVHHDGQPLEHGGLQEYRRLGPVAPPGGAPGXXXXXXXXARVVSTKASTMHNPVEPEELARLQAKKDAYRKDLETQMAEHKKLVDQRKRGAPGSKEAEVFHLQEAMEERNERNKLAPGYEMGPLGVAVMKDKYSTTGRGQRSPPKKVS-----------AAVELLGSLGRPIG----LTNADIFGSGETGESSSLLPPPEGAAGGVVDSNGVPSRRGSGLRELLGIETDAKRDREKSRVQAEALKKQVEDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEKRXXXXXXXXXXXLERKYAKERAVEAPLGQASGPSKPMGPA-FPVKKSTAVNSPRPMETPREVKY-KTIVAGGCLLVRLLPRPVKGLHSPSIS-----------PSTPKTNRHPNRVIPCPHPAPSSDN--PAPSDEVSLEKLRTELLKQKQVTEVLRHEVDQQEAERRKLLDIARCAKESEAAVLRATYERRASQHARDKEVGYTGSVTASNELWRVPPPPVIKDVEGEGGTSSPKALQWVDSADAAEKGCIGKHRDGRRLEMEGTAEDRLLLAGLRRLNDCDRTPGEGCGPASPTHGELGGGSTFQERVPGARAWSRGVASNSGDGCD-KDFLLYRDTASPGGIRAESRYVFPDGSVRRGFETP------GRTALVSDTPMPLVGTSRMASADLSLAMGIEALGGGSGEGGSSDSINETPGRRRRTGRSGTCTNNGGAYRGPGAVSGASWAPGGRPPRAYVPFLNLPASNGMANRNSGKALRRRQDSHGLGRVSGSVNSSSNSDDSPSPFLFTHSVSKGGRNRRRGRPLAGVGGLLVSPGRAMLTGPGRPGTGASSSLRKMFGDTDSEYGNPGRSRRRFDSGGVCGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVEFLRRRAEAKLRSLDRQEAANLVE-----------------------------------EEALDLLVASSPARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMYSSRKKRPGTNQSEMSMLGDSRWAQ 5406
VAR P+++HA+ ++EQM AD +AQR ++ R R V + T + +G +LPHA+ + S+AI+RKAEYA QLREQMA+DEA ++AMETER+ S S +A PA G E RGG + RV+ V+ AKAEYA QLREQMA ENAQRAA GREA R+RSNT+YAEQLRAQI AQK NQ QQ L+ + V P K GN YQQ+ +Q G ++Q ++H Q + RS+ R E+ IS SR NPLA RQ+RV+ QREYAEALRRDMA PKVDSLGRP+ DITSP+RTRLR S N N N+ E + AP LQ GPR QAG RGWSQ QP ERE LRE+ + GAWP + Q + Y + QHSR+PPVPGT++ N D+ GR+G A W+ + PP + + +G WG G G R G K+ +E + H Y R H +H Q++ GP PP GAP V STKAS MHNPV+P ELA++QAKK++YR+DLE QMAE KL +QRK+G SKEAEVF+LQ+AMEERNERNK+APGYE+GPLGV V+KD YSTTGRGQRSP K + AA +G P+G TN+D+FGSG G SSSLLPP EG AG G PSRRGSGLRELLGIET A+RDREKSRVQAEALKKQVEDN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +YA+ERA E PL QAS + + FP KK SPRP+ +PRE++ + G ++ LLP +G +PSI PS KT R P PH P+S P + VS+EKLRTEL KQKQ+TEVLRHEV QQEAE+RKL+DIAR AKESEAA LRA YERRAS+H KE+G G NELWRVPPPP ++ VEGEG T SP + +S AA+ C+ R+L+M+ TAEDRLLLAGLRRL D +R PG GC +G G STF+E+VPGA AWS G AS+ DG D K L SPGGIRAESRYVFPDGSVR+ ETP G PMPLVGTSR+ASADLS A+GI++L GG G G + D + + GRRR TGR+G+ N GG +RGPGA GA WAP GRPPRA+VPFLNLP NG A+ N+ K RR S G S+ DSPS +S + GR++RRGRPLAG+GG+LVSPGRAMLTGPGRPGTGA+S R +G+ S + +SRRR GV TDVEFLRRRAEAKL+SLDRQEAA + EE L+LLVASSPAR RSLMYS +KKRPGTN+SE SMLG+SRWA+
Sbjct: 4 VAR-PDSNHARHVREQMMADVAAAQRGNDDARLRGPVVAITPAHRGRTLPHAQPVETEDSTTAVSSAIDRKAEYASQLREQMASDEATKKAMETERKSNVSIVSFAAGPAIGGHEEGLRGG-ENERVNESVRQAKAEYAHQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREACRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDIIEQGGNEKHYQQEHQQLLGGVNS------FDYQSGEPERHRSQ--IDDRRSQGRPRTEEKISLSRGEFNNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTN-NNPEFFGQNDGAPREASHLQLGPRPQAGEHARGWSQ--------QPFERECLREHATPYGAWPSFRAQSQGRYEVGEHQHSRQPPVPGTNYDAYGSNPKGYPSRGGYDELEYPTGRRGNATWVAEGISTSGLPPPRREFADDGERRGERWGTSESYPATGSGYPIHRSILPEFGGKNARQESWETTHPSVRHGYNRDVHLVPIRDHREQQDHWYFGPRDPPSGAPAVGGGVG----VRSTKASKMHNPVDPVELAKIQAKKESYRRDLEAQMAERTKLQNQRKQGMHRSKEAEVFYLQQAMEERNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATVNRGLAASSAIGLSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGAG-----VGAPSRRGSGLRELLGIETRAERDREKSRVQAEALKKQVEDNKEGKLAKALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQKELERNRINNLASVRDLLVTT--------LMAEMLNYSSRYARERAAEEPLVQASSNLADLPVSEFPTKKGGGTRSPRPINSPRELEVNEKRHEGSVMMPHLLPGRERG--TPSIEAQTDNGEQMAEPSKIKTKGPVQRDGPSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGAAEGNELWRVPPPPAVEGVEGEGRTPSPSDRRRAESTRAAKNACVAN----RKLDMDETAEDRLLLAGLRRLGDGNRAPGGGCDTDRLRNG---GDSTFREQVPGALAWSSGAASSGRDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVRQRLETPAAEGGVGXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGG-GSGAAGDDVEKASGRRRSTGRTGSRGNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVLNGKASGNTSKE--RRWASRG-----------SDGSDSPSFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGEAGSVHHRRRQSRRRARREGV-----------DRDSISIGDEEFSDDCDSVGSGSTDVEFLRRRAEAKLQSLDRQEAAVKAKGNTFIMEAQCAFRFLALALLARKTNVSPSAPPVQAEEELNLLVASSPARGTTDATTPEAPALHSRAVGGVRAAAPTHNTARRMISAASSSSS--RSLMYSRQKKRPGTNKSESSMLGESRWAE 1573 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.39.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig117.39.2 >prot_P-littoralis_Contig117.39.2 ID=prot_P-littoralis_Contig117.39.2|Name=mRNA_P-littoralis_Contig117.39.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1807bp GLRIAAQQGWAPGNAPAIAMAVGIPPGSGATLSERDRRLEARYEERRRRNback to top mRNA from alignment at P-littoralis_Contig117:104715..117492+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig117.39.2 ID=mRNA_P-littoralis_Contig117.39.2|Name=mRNA_P-littoralis_Contig117.39.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=12778bp|location=Sequence derived from alignment at P-littoralis_Contig117:104715..117492+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig117:104715..117492+ >mRNA_P-littoralis_Contig117.39.2 ID=mRNA_P-littoralis_Contig117.39.2|Name=mRNA_P-littoralis_Contig117.39.2|organism=Pylaiella littoralis U1_48|type=CDS|length=5421bp|location=Sequence derived from alignment at P-littoralis_Contig117:104715..117492+ (Pylaiella littoralis U1_48)back to top |