mRNA_P-littoralis_Contig117.35.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.35.2
Unique NamemRNA_P-littoralis_Contig117.35.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: D7FYV7_ECTSI (Anaphase-promoting complex subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV7_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 8.210e-131
Identity = 195/212 (91.98%), Postives = 200/212 (94.34%), Query Frame = 2 
Query:   95 MADESQVSQQXXXXXXXEAKTESSELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            MAD+SQVSQQ       EAKTE+SELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDST+TYWQSDGGQPHLINIQFHKKMTVVEIAFHLDF SDESYTPKKLSIRAGSSFHDLVEVT+KELHEP GWVRVPLFAPGG GAA IAADAAGGAEG VLRAHF+QICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR
Sbjct:    1 MADDSQVSQQPAQPP--EAKTEASELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAAAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 210
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: F0XYN0_AURAN (Anaphase-promoting complex subunit 10 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYN0_AURAN)

HSP 1 Score: 221 bits (564), Expect = 6.250e-67
Identity = 118/205 (57.56%), Postives = 141/205 (68.78%), Query Frame = 2 
Query:  146 EAKTESSELDYV-TRREIGREAVWSLSSAKPGNGVDQLR--------DDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLA-SVQHDPSLLEFISPEFETFACIR 730
            EA+T +SELD     REIG EAVWSLS+AKPGNGV+Q+R        D++TETYWQSDGGQPHLINIQFHKKM++ E+AF+LD+G DESYTPKK+SIRAG++FHDLVEV + +LHEP GWV V L                   +G  LRA FLQ+CVV+MHQNGRDTH+RQ K+FGPR    V        F S     FA +R
Sbjct:    6 EARTGTSELDVSPANREIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDESYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVALSH----------------GDGKALRAFFLQVCVVSMHQNGRDTHVRQAKIFGPRTPIDVCAGKHAARFTSVALTQFAVLR 194
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: W7U0V1_9STRA (Anaphase-promoting complex, subunit 10/DOC domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.180e-65
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2 
Query:  188 REIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPL---FAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPR--------------LASVQHDPSLLEFISPEFETFACIR 730
            R+IG EAVWSLS+AKPGNGV+Q+RDD  +TYWQSDG QPHLIN+QFHKKMT++E++ +LD+  DESYTPKK+SI+AG++FHDLVE+    L EP GWV+VP+   +A   +G   +    AG   G VLRA FLQI ++AMHQNGRDTH+RQVKV+GPR              +AS+    ++ EF S E   F+ +R
Sbjct:   24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: A0A7S3AMX8_9EUKA (Anaphase-promoting complex subunit 10 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX8_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 6.530e-62
Identity = 108/183 (59.02%), Postives = 135/183 (73.77%), Query Frame = 2 
Query:  185 RREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRV-PLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            RREIG +AVWSLS+AKPGNGV+QLRDDST+TYWQSDG QPHLINIQF KKM V EI  + DF  DESYTP K+SIRAG++FHDL E+ ++EL+EP GWV + P   P         +D A G++  +LR HF+Q+ ++A HQNGRDTHIRQ+K++ PR    QH   L EF S  F+ +AC+R
Sbjct:   51 RREIGEQAVWSLSTAKPGNGVEQLRDDSTDTYWQSDGPQPHLINIQFPKKMRVHEIQIYTDFKHDESYTPSKISIRAGTTFHDLQEIHVEELNEPSGWVTILPPREP--------TSDTAPGSQ--LLRTHFIQVAILANHQNGRDTHIRQIKIYTPRKDMGQH-MGLPEFNSIAFQQYACLR 222
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: A0A485KIW7_9STRA (Anaphase-promoting complex subunit 10 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIW7_9STRA)

HSP 1 Score: 207 bits (528), Expect = 7.980e-62
Identity = 107/184 (58.15%), Postives = 129/184 (70.11%), Query Frame = 2 
Query:  179 VTRREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            + +REIG EAVW+LSSAKPGNGV QLRDD+ +TYWQSDG QPHLINIQFHKKMT+ E+A +LD+  DESYTPK L IRAG++FHDLV++    + EP GWV +PL     +GAA              LR  FLQI V  MHQNGRDTHIRQVKVF PR  ++    +  E  + +F +FACIR
Sbjct:    1 MRKREIGDEAVWTLSSAKPGNGVHQLRDDNMDTYWQSDGPQPHLINIQFHKKMTIREVALYLDYKLDESYTPKMLMIRAGTTFHDLVDIKAHTIAEPNGWVTIPLTQTVVSGAAAFEKP---------LRTFFLQISVTGMHQNGRDTHIRQVKVFAPRQTALLGLDAAPEPSTVDFSSFACIR 175
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: A0A8K1FCQ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCQ9_PYTOL)

HSP 1 Score: 206 bits (523), Expect = 4.030e-61
Identity = 104/182 (57.14%), Postives = 128/182 (70.33%), Query Frame = 2 
Query:  185 RREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            RREIG +AVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF KKMT+ EIA +LD   DESYTP+K+SIRAGS+ HDL E+  +++ EP GWV + L  P                  + LR  FLQ+ V+AMHQNGRDTHIRQVK++ PR  +   D S+ E  S +F  ++CIR
Sbjct:    5 RREIGDDAVWSLSSAKPGNGVDQLRDNNVDTYWQSDGSQPHLINIQFFKKMTISEIALYLDHKLDESYTPRKISIRAGSTVHDLKEILAQDIEEPNGWVSIQLAGPDD--------------PETPLRTFFLQVAVLAMHQNGRDTHIRQVKIYAPREKTNTLDRSIPEPSSEQFWAYSCIR 172
[Close]
BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: H3GWS0_PHYRM (Anaphase-promoting complex subunit 10 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWS0_PHYRM)

HSP 1 Score: 206 bits (523), Expect = 5.060e-61
Identity = 100/182 (54.95%), Postives = 135/182 (74.18%), Query Frame = 2 
Query:  185 RREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            RRE+G +AVWSLSSAKPGNGVDQLRD++ +TYWQSDG QPHLINIQF +KM + E+A +LD+  DESYTPKK++IR+GS+ HDL E+ ++++ EP GW+ +PL+                G+E + LR  FLQI ++AMHQNGRDTHIRQVK++ PR A+V  D ++ +  +P F  ++CIR
Sbjct:   12 RREVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGMQPHLINIQFSRKMAIKEVALYLDYKLDESYTPKKIAIRSGSTAHDLKEIHVQQIVEPNGWISIPLYT-------------GDGSEQTPLRTFFLQIVLLAMHQNGRDTHIRQVKIYAPREANVL-DWTIPDATTPLFAAYSCIR 179
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: K3WX17_GLOUD (Anaphase-promoting complex subunit 10 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX17_GLOUD)

HSP 1 Score: 204 bits (520), Expect = 1.200e-60
Identity = 103/182 (56.59%), Postives = 130/182 (71.43%), Query Frame = 2 
Query:  185 RREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            RRE+G +AVWSLS+AKPGNGVDQLRD++ +TYWQSDG QPHLIN+QFHKKM + EIA +LD+  DESYTPKK+SIR GS+ HDL E+  + L EP GWV +PL              A+   + + L+  FLQI ++AMHQNGRDTHIRQVK++ PR  +   D SL E  + +F  F+CIR
Sbjct:    7 RREVGDDAVWSLSTAKPGNGVDQLRDNNVDTYWQSDGSQPHLINVQFHKKMALKEIALYLDYKLDESYTPKKISIRCGSTVHDLKEIYAQSLAEPNGWVTIPL-------------TASDDDDETPLQTFFLQIAIIAMHQNGRDTHIRQVKIYAPREPNAL-DRSLPEPSTEQFWAFSCIR 174
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BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: A0A7S0RL68_9CHLO (Anaphase-promoting complex subunit 10 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RL68_9CHLO)

HSP 1 Score: 204 bits (520), Expect = 1.370e-60
Identity = 99/188 (52.66%), Postives = 131/188 (69.68%), Query Frame = 2 
Query:  167 ELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            E  + +R EIG+ AVWS++SAKPGNGV+ LRDD+ ETYWQSDGGQPHLINIQF KK+ + E+  + DF  DESYTP KLSIRAG+SFHDL E+ + +L EP GW+  PL   G              +    +RA+F+Q+ V++ HQNGRDTHIRQVK++GP +   +     L++ SPEF+ F+C+R
Sbjct:    5 EFKHDSRAEIGKLAVWSVTSAKPGNGVEMLRDDNLETYWQSDGGQPHLINIQFQKKVRLKELEIYADFKQDESYTPNKLSIRAGNSFHDLREIRVVDLEEPVGWMSFPLTPDG--------------SNQEYMRAYFVQLAVLSNHQNGRDTHIRQVKIYGPHVDLARAMGHPLQYTSPEFQMFSCVR 178
[Close]
BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Match: A0A6A4EML9_9STRA (Anaphase-promoting complex subunit 10 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EML9_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.810e-60
Identity = 101/182 (55.49%), Postives = 131/182 (71.98%), Query Frame = 2 
Query:  185 RREIGREAVWSLSSAKPGNGVDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTPKKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAGGAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 730
            RRE+G +AVWSLSSAKPGNGVDQLRD+S +TYWQSDG QPHL+NIQF +KM V E+A +LD+  DESYTPKK++IR+GS+ HDL E+ ++ + EP GW+ +PL +                 E   LR  FLQI ++AMHQNGRDTHIRQVKV+ PR  +V  D ++ E  +P+F  ++CIR
Sbjct:   11 RREVGDDAVWSLSSAKPGNGVDQLRDNSVDTYWQSDGVQPHLVNIQFSRKMAVKEVALYLDYKLDESYTPKKVAIRSGSTVHDLKEIHVQHIAEPSGWISIPLSSD---------------EEQVPLRTFFLQIVILAMHQNGRDTHIRQVKVYAPRETNVL-DWTIPEATTPQFAAYSCIR 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.35.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV7_ECTSI8.210e-13191.98Anaphase-promoting complex subunit 10 n=2 Tax=Ecto... [more]
F0XYN0_AURAN6.250e-6757.56Anaphase-promoting complex subunit 10 n=1 Tax=Aure... [more]
W7U0V1_9STRA1.180e-6555.05Anaphase-promoting complex, subunit 10/DOC domain ... [more]
A0A7S3AMX8_9EUKA6.530e-6259.02Anaphase-promoting complex subunit 10 n=1 Tax=Hapt... [more]
A0A485KIW7_9STRA7.980e-6258.15Anaphase-promoting complex subunit 10 n=1 Tax=Apha... [more]
A0A8K1FCQ9_PYTOL4.030e-6157.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GWS0_PHYRM5.060e-6154.95Anaphase-promoting complex subunit 10 n=1 Tax=Phyt... [more]
K3WX17_GLOUD1.200e-6056.59Anaphase-promoting complex subunit 10 n=1 Tax=Glob... [more]
A0A7S0RL68_9CHLO1.370e-6052.66Anaphase-promoting complex subunit 10 n=1 Tax=Pyra... [more]
A0A6A4EML9_9STRA1.810e-6055.49Anaphase-promoting complex subunit 10 n=3 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:99688..103974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYV7
Preferred nameANAPC10
PFAMsANAPC10
Model size1370
Max annot lvl2759|Eukaryota
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K03357,ko:K11788
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00230,map01100,map01110,map01130,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00048,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005739,GO:0005829,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008156,GO:0008283,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010087,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0016043,GO:0016567,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0036211,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045786,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070979,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090329,GO:0098772,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234,GO:2000104,GO:2000112,GO:2000113,GO:2000736
Exons5
Evalue1.82e-136
EggNOG OGsCOG5156@1|root,KOG3437@2759|Eukaryota
Ec32 ortholog descriptionPutative subunit of the Anaphase Promoting Complex
Ec32 orthologEc-19_002640.1
EC6.3.3.1,6.3.4.13
Descriptionanaphase-promoting complex-dependent catabolic process
Cds size639
COG categoryDO
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.35.2prot_P-littoralis_Contig117.35.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 100325..103880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.7975323-UTR-P-littoralis_Contig117:99687..1003241680789487.7975323-UTR-P-littoralis_Contig117:99687..100324Pylaiella littoralis U1_48UTRP-littoralis_Contig117 99688..100324 -
1680789487.86336-UTR-P-littoralis_Contig117:103880..1039741680789487.86336-UTR-P-littoralis_Contig117:103880..103974Pylaiella littoralis U1_48UTRP-littoralis_Contig117 103881..103974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.8122833-CDS-P-littoralis_Contig117:100324..1004231680789487.8122833-CDS-P-littoralis_Contig117:100324..100423Pylaiella littoralis U1_48CDSP-littoralis_Contig117 100325..100423 -
1680789487.821478-CDS-P-littoralis_Contig117:100677..1008631680789487.821478-CDS-P-littoralis_Contig117:100677..100863Pylaiella littoralis U1_48CDSP-littoralis_Contig117 100678..100863 -
1680789487.830617-CDS-P-littoralis_Contig117:101309..1013751680789487.830617-CDS-P-littoralis_Contig117:101309..101375Pylaiella littoralis U1_48CDSP-littoralis_Contig117 101310..101375 -
1680789487.8420336-CDS-P-littoralis_Contig117:103172..1032641680789487.8420336-CDS-P-littoralis_Contig117:103172..103264Pylaiella littoralis U1_48CDSP-littoralis_Contig117 103173..103264 -
1680789487.8512897-CDS-P-littoralis_Contig117:103684..1038801680789487.8512897-CDS-P-littoralis_Contig117:103684..103880Pylaiella littoralis U1_48CDSP-littoralis_Contig117 103685..103880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.35.2

>prot_P-littoralis_Contig117.35.2 ID=prot_P-littoralis_Contig117.35.2|Name=mRNA_P-littoralis_Contig117.35.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MADESQVSQQQQPEQPQEAKTESSELDYVTRREIGREAVWSLSSAKPGNG
VDQLRDDSTETYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFGSDESYTP
KKLSIRAGSSFHDLVEVTIKELHEPGGWVRVPLFAPGGAGAAVIAADAAG
GAEGSVLRAHFLQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEF
ISPEFETFACIR*
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mRNA from alignment at P-littoralis_Contig117:99688..103974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.35.2 ID=mRNA_P-littoralis_Contig117.35.2|Name=mRNA_P-littoralis_Contig117.35.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4287bp|location=Sequence derived from alignment at P-littoralis_Contig117:99688..103974- (Pylaiella littoralis U1_48)
CGCACATCATCTGCCCCGCTAGCCCGCAAGCATTGCAGCAGTCAACAAAA
AAGAGCGGATACGGCTGTCCACGCTGCCACCTACCTTGCTCACTATGGCA
GACGAGAGTCAGGTGTCGCAGCAGCAACAGCCTGAACAACCTCAGGAGGC
AAAGACGGAATCCTCTGAGCTCGACTACGTGACTCGAAGGGAGATCGGCC
GGGAGGCGGTGTGGTCGCTATCCTCGGCCAAACCCGGCAACGGGGTCGAC
CAGCTGAGGGACGACTCCACCGAGACCTACTGGCAGTCAGGTGAAGTGCG
CCAAGAGTCTCTGCTGCCTCGCAGTAAAAGGGGTTGGCAAGCATTCAGTA
TGTACAATTAGGAATAAATTCTCAACATTTACCCGCAAACGAGTACAGCG
TTACCTAGTGATGAGAACAGATGAGGTTGCAGTACCAGCAGCCAGAAAAT
ACATGCAACACAGCACAGGTTGTGATATTTTGCGGTTTTCAAGGGGTCGT
ATCATATGATATTTCCGCTATACTTGTACTTGTGCGACTATAATACCTGC
AACTGCGAACAGGCAAGAAAGGCAGCAATGCAGCGCGTGTACACCTCTCA
TTCGAAAATCGCCGAGAGCAACATCATTAGTATTTTTGTCACACAACCCC
GAGAGGGTGGCACAACCCCGGAAACCGAAATGTTGCCCTATTTTCCGTCC
CATCACACAGACGGCGGGCAGCCGCACCTGATCAACATCCAGTTTCACAA
GAAGATGACCGTCGTGGAGATCGCGTTTCACCTCGATTTTGGTTCAGATG
AGGTGAGAGAGGGAGAGAGAGCCCGATGCCCATGACACGTGCTCTCCAAT
CGGGTACGATTGTGCACGAGCATGAATTCGCCGCAGCGGCTCTGCTTGAA
GTCTCCCCCCGGTAACGACACTGTACAGCCGGGTCCCGCGCGACCCATAT
TTCGTTATGTTGGGAGTGAACGCGATACTACGGCGTGTACACAGTAGACT
ACTGTGATTCTAAGTCGAAGCCCACCTCCGTAAGATATACAAAGCCGGTC
TAGGATCTGGGCGGGAGACAGGGTTTGGGCGGGAGAGGCAGAAGCCGAAT
TGTCGACGGGGTAAATTTGTGGAGAAAAAATTAAGCTTTGGTCAATATCG
TACGTAATTGGCAGAACATTTGGTTGGAAAAGTAGCGGGAAACAGTGGGA
AATAGGCCTCGAGCGGGGAACGGAAGGCGACACTAGGGCTTCAGGCAACA
AGGATGGGGAGGAAGATGGCAATATGCGGGAAGCGCGAGGCGTGGTGTGT
GCCAGTCGGAACATAAACAAAGGTATGTCTCTAATTGGCTGGTGCTGCTG
TGCGTAGTCGACTAAGAGCGTGGGTGGTAAGCTGCAGCCCGGTAGGAGAT
AGTTCATTGTCGCTCGCCGGTGGTTGCGGCAAAGGTAATTTGACTTGCAG
TGGAACACAAGTTGTGAAGGAAATGGTGAAGGAAACGAAGCCCCAGGGTG
GAGGCGGCGGTGGTGCCATGCTGGGATCGACAAAGGTGTGGGAGTAGGTT
GAGAGGGGGGAGACAGGTTGGGTTATAATCGCACCTGGCCTGGTGTAGGT
TTTAAGGGAAGGTGAGGGGCTGCAAATCGGCCGATACATTCTGCAACACG
AGACGCACACAGGAAGGGTGTATCAAAATCAGAGGTTTTGACATGTATCG
AGGAAGGTACAGCGGTATGGTGCAGAGAGTTTCTCGCACCTTGTGAGCCT
TAGCACGCGCGCTGAATGCCGTCTTGGTTGTGTGTGGAAAGGACCAAGAG
ATCAGGGTGGATGTGAGGAGATGGCGCTGTAATTGCGAACTGCCATATAA
ACCACCGGGAATTTTTCCACCGTATGAAACGCGCAGAGTCGAACATGAAT
AGGTCCACCTACAGTAGAAGATACGAATCAACCGCTATGTTGAAAGTTGC
GCTCGTTGTCCTTTGAACAAACTCGTTTGTATCGTGCGACGTTCTCCGAT
GTAACACCACGCCAGCCCAAAGAGACGACGAACGCTTGCATGGCTTCTTG
CCGGGCGTGACGGTAACGGAGCTACTCACGACAACAGCATGTTCATGGAT
TGTCGACGAAAATTCCATCACAACTAGCGTGCGGTCCAACATGTACAGAC
GTGTACATGATTCCCATGTTTCCTTTATTTCGGTGCGGTCGTAGTTGTGA
CGCGGGTGTGGTTGGGGACAAACAGCGATACAGATGTGTAGTGAGGCAAT
GAGTTGTAGCCGAGCGTGTGATTGCCACACGAGTGAGGGGAGGGGGTTCG
GGCTTTCAACAGCCGATGTCGTGCCCTCTTAGACGTCGGCAATATGAGTT
TTTTCGGCGACGGCATTGAGGGATTCCTATGTTTTCTTGCGGTAGACGTC
GACTGCTGTAGAGTTGTTTGTTTTGGGCCATAATTGATAATCAGCAAATA
ATATCAGACTTGCAGCTTTCTTTCGCGATGTTTCAAGTTTGAGGCGAACG
CGCCGCTGCAATTTATCTATCATACAAGTACATGTTTTTTTGTGACGATC
CTGCTCTTACCTTCGTTTGTGAAACCCCTCTGTCGCGTTCGATAAACAGA
GTTACACACCCAAAAAACTTTCGATCAGGGCAGGCAGCAGCTTTCACGAC
CTCGTGGAGGTAACGGTAAGTGGAGCCCCTCCTGGAGGCCCATTGAGTCA
CTCACCAGCATCTACTGTAGTTGTCAAGGCTGGGTGTTTCCCACGAGTGA
CTGGAAGCCGCAGGCTGTTCCGACTGGTGTGATACTGCACTGTGCCTCGC
GATGTTCATGTCCGACCTGTTTGAGTCGGGATACGCCCGAGAGAGGTTTG
CTAAAGCCCAACAGGCGATGAGGCAACCCGTAGATATATAACACACCAGG
TGTTTGTAGCATTTCACTGTGTCCACTCTTGGGGGCCTGCGGTGCATCAC
CTGGCAAGGTGTGCAGAGCTTGTGCTATACGTCCCTGAGTTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCCTTTAC
CTCCTCTCTACCTTCTTTCTACCCCCTGCGCCCCAATCCGGCCGTCACGG
TCGTTCCCCAGATCAAGGAGTTACACGAGCCCGGTGGGTGGGTTCGAGTG
CCGCTATTTGCGCCCGGGGGTGCCGGGGCGGCGGTGATCGCGGCGGATGC
TGCCGGTGGAGCGGAAGGCTCGGTGCTGCGAGCGCACTTCTTACAGATCT
GCGTGGTAGCCATGCATCAAAACGGTCGAGATACACACATTCGACAAGTG
AGCATGTGTGGCGCTGGCTGTTTGAACACAGCAAAAGTATCATGTTCACA
GCTGTCACACGTGGAGCATCGGATTTCCCCCAGGATACCTGCATTCAGGG
CTACCCCTTGCCATCGTGTGGGGTCTTGGATTTCGATGGAATATTTGTTT
ACAAACCGCGAGAAAGAACCTGACCCACGCTGGATTCGAACCCTGAATAC
CATTTCCACTGAGAAACACATCTGCCACTGCTTTCTGTGGTCAACGCACA
GGTGAAAGTGTTTGGCCCGCGGCTGGCGTCCGTGCAGCATGACCCATCAC
TCTTGGAGTTTATATCGCCGGAGTTCGAGACCTTCGCGTGCATCCGATAG
CCCCTGGCCCCCAAGGAGAAAGTGATATTGGGCGGACGGCGAGATAGTGA
TGTACAGGGACATGTTGCTGCTGTGCTGGCTGCCGTCGGGGGGAGTGGAG
GATGAGGGGTGAGGGGCAGTGCTCCGCCATCGATCGTGTCGACGACGTAG
TGGATGGGGGCCACTGCTGCTAGTGGTTCGATTTTGCTGATACGGCTCCC
AGATAGTGAAGGGGGGAGAGGGCTTGTGTTCGTCCTTCGCCCAAGTTAGG
CGTGTCGCCTTTGGCCACATCGTGCAAATACCCCCGTTTCGCCCGTTTCG
AGACCGTACGAGGGAGGATACGCCATGTTTGTACAGTACGTCAACATGTA
GGGCAATTTTTTTGCCCGGCGGGAAGCCGATCGCCCTAGGCAACACGCCC
AGTTCTTGACGAAATTTTGCGAAGGCTGCGGGGGACCGAACCCGCCGCAA
GCATCTCCCTACTTAACTCTCGACTAATTGCGATGTGTCACAAGACAATT
TTACGGCCATGTATGCAAGTGCCCATATGATACCCACACAACGAAAACGC
GTTGAGCGTTCTAACTTGAGGACGACTCTTTTGTGGCCAAGCTGACCACA
CGATTGGCGTCTTTGTAAGTACTGCTGTGACTCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:99688..103974-

>mRNA_P-littoralis_Contig117.35.2 ID=mRNA_P-littoralis_Contig117.35.2|Name=mRNA_P-littoralis_Contig117.35.2|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig117:99688..103974- (Pylaiella littoralis U1_48)
ATGGCAGACGAGAGTCAGGTGTCGCAGCAGCAACAGCCTGAACAACCTCA
GGAGGCAAAGACGGAATCCTCTGAGCTCGACTACGTGACTCGAAGGGAGA
TCGGCCGGGAGGCGGTGTGGTCGCTATCCTCGGCCAAACCCGGCAACGGG
GTCGACCAGCTGAGGGACGACTCCACCGAGACCTACTGGCAGTCAGACGG
CGGGCAGCCGCACCTGATCAACATCCAGTTTCACAAGAAGATGACCGTCG
TGGAGATCGCGTTTCACCTCGATTTTGGTTCAGATGAGAGTTACACACCC
AAAAAACTTTCGATCAGGGCAGGCAGCAGCTTTCACGACCTCGTGGAGGT
AACGATCAAGGAGTTACACGAGCCCGGTGGGTGGGTTCGAGTGCCGCTAT
TTGCGCCCGGGGGTGCCGGGGCGGCGGTGATCGCGGCGGATGCTGCCGGT
GGAGCGGAAGGCTCGGTGCTGCGAGCGCACTTCTTACAGATCTGCGTGGT
AGCCATGCATCAAAACGGTCGAGATACACACATTCGACAAGTGAAAGTGT
TTGGCCCGCGGCTGGCGTCCGTGCAGCATGACCCATCACTCTTGGAGTTT
ATATCGCCGGAGTTCGAGACCTTCGCGTGCATCCGATAG
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