mRNA_P-littoralis_Contig1169.25.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: Q8QNC8_ESV1K (EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC8_ESV1K) HSP 1 Score: 192 bits (487), Expect = 4.510e-55 Identity = 109/255 (42.75%), Postives = 157/255 (61.57%), Query Frame = 1
Query: 10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDS--DGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFD----------EATVDTLKVSLSETNEKYEFLETMYAAMMHSSN--EPGVTYRALKLQTVKEFYLETILD 717
AA+EY++RG+ H+ K +Y+A+L A D+ +GLAKEVCDRFRC+ DFDR AM +IF S CNDR + +LD +++ KT+ EH F +EF+ +FF+ ME +V L +L Y T + M+ AR +++ H IAT+ CF + PR NNL+ + VSIGC+ V+F + T+D LK SL + +EK EFLE M+AA+ H+SN +P VTYR L+L++VK F+LE +LD
Sbjct: 65 AALEYMKRGW--HSPDDAKAKFALYLAILVAYDNAENGLAKEVCDRFRCVYDFDRHAMEQIFKISLCNDRVRKVLDNLLISKTEGTL-VFEHVFNMEFVEIFFNGMEMVVRDMHTLADLGYTSNVTSTDMKLAREIMDNHLGEIATRCSPCFQRNVLRLPRKNNNLFPAGDGFPQVSIGCDPVRFGGVTEDKLENAKNTIDLLKESLMDKDEKGEFLEMMFAAISHASNPRDPVVTYRRLQLESVKHFFLEKMLD 316
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: D8LPH6_ECTSI (EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH6_ECTSI) HSP 1 Score: 181 bits (459), Expect = 6.140e-51 Identity = 103/255 (40.39%), Postives = 152/255 (59.61%), Query Frame = 1
Query: 10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDS--DGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFD----------EATVDTLKVSLSETNEKYEFLETMYAAMMHSSN--EPGVTYRALKLQTVKEFYLETILD 717
AA+E+++RG+ H K +Y+A+L A D+ +GLAKEVCDRFR + DFDR M IF S CNDR + LLD +++ KT+ EH F +EF+ +FF+ ME +V L +L Y T + M+ AR ++++H IAT+ CF + PR NNL+ + VSIGC+ V+F + T+D LK SL + +EK EFL+ M+A + H+SN +P VTYR L+L + ++F+LE +LD
Sbjct: 65 AALEFMKRGW--HRPQDAKAKFALYLAILVADDNAENGLAKEVCDRFRRIHDFDRHVMEHIFKISLCNDRVRKLLDNLLISKTEGTL-VFEHVFNMEFVEIFFNGMEMVVGDMHTLADLGYASIVTATDMKLAREIMDRHLGEIATRCSPCFQKDVLRLPRKNNNLFPAGDGFPNVSIGCQPVQFGGVTEDKLENVKNTIDLLKESLMDKDEKEEFLQMMFAIISHASNPRDPVVTYRRLRLASARDFFLEKVLD 316
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JJK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK7_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.800e-47 Identity = 104/246 (42.28%), Postives = 143/246 (58.13%), Query Frame = 1
Query: 13 AVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDG----LAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMV--LKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS-----TVSIGCELVKFDEATVDTLKVSLSETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
A+EYLR+GFAD +T RK++I +Y+A+ D D LAKE C+RF+ L ++D MTKIFN S NDR LLD + K K I EF+VEF+ L+F ++S+V R Q LT+L Y T +E + +KH SSIA KF CF ++ KKPR NNL+ S V IG E + FD T DTL+ SL + K EF+E M A + P T+R L+ ++VK +++TIL+
Sbjct: 404 ALEYLRQGFADPDTPDRKVSIALYVAIYIGHDHDDGDGVLAKEFCERFQVLGNYDANVMTKIFNLSLWNDRILSLLDTTIAPGRKKKDTFTMIHREFRVEFVLLYFQVVKSLVVRGQSLTDLGYPTNLTADDVEASEETFDKHVSSIADKFWPCFKMEALKKPRVVNNLFPSGDQLPRVVIGREHIDFDLTTTDTLRDSLDDKAGKDEFVEIMRAIICLPMRGPVATFRDLRFESVKNHFMKTILE 649
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5KVG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG0_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.190e-39 Identity = 91/250 (36.40%), Postives = 141/250 (56.40%), Query Frame = 1
Query: 1 LSLAAVEYLRRGFADHNTFVRKINIDMYIAVLKA--QDSDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQ--PLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS------TVSIGCELVKFDEATVDTLKVSLS-ETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
L+ A +E+++ D +T RK+ + + +AV A + GLAKE+CDR R ++DF+R MT++FN S DR LLD +++ + K + I+ E VEF+ LFF +ESI+ R + L Y ATPS M AR ++EKH S+IA G CF +K K+ R + NL + T ++G + V F + LK SLS ++ E FL+ ++A M S P T+ ++L T + F+L+ +LD
Sbjct: 52 LTKACMEFMKAEVFDKDTSDRKVMVAIRVAVSIAIGEAQRGLAKEICDRLRKVEDFNRYLMTEVFNLSIVTDRVCTLLDDVIIHQKKHVSKDIQQELCVEFVVLFFGIVESILRRGHCHTFSELGYATSATPSDMGNARNILEKHVSAIAAMCGPCFILKALKEKRPRLNLLPANGTLPQTTTLGTDHVDFASCGIYVLKSSLSHDSKETKTFLDIIFATMSLSHKTPADTFDDIRLDTTRTFFLDKVLD 301
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5K2L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L9_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.140e-39 Identity = 87/203 (42.86%), Postives = 117/203 (57.64%), Query Frame = 1
Query: 10 AAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDG--LAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAST-----VSIGCELVKFDEATVDTLKVSLSETNEK 597
A+ EYL+ GF D +T +RK+NI +++AV A D D A+EVC+RF+ L D+DR M KI +FS NDR LLDK+M+ + PA + EF EF+ +FF+ ME +V + LT+L Y TP ME AR +I KH IA K CF K K P A+ L+ +T SIGC V +DE +D LK + EK
Sbjct: 54 ASQEYLKLGFVDRDTPIRKVNIALWVAVSLANDHDNNKFAQEVCERFQGLYDYDRNVMEKIISFSMYNDRIGKLLDKVMIRQESNTTPAFDLEFNAEFVLIFFNIMECLVKDKHRLTDLGYAANVTPDDMEKAREIIHKHLDDIAMKCSPCFKKKELKPP-ARRELFPATGVLPHPSIGCNHVTYDEV-IDKLKEGFLDNAEK 254
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JFF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF2_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.810e-36 Identity = 95/258 (36.82%), Postives = 137/258 (53.10%), Query Frame = 1
Query: 1 LSLAAVEYLRRGFADHNTFV-RKINIDMYIAVLKAQD--SDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTN---------LEYVDKATPSQMEGARGVIEKHASSIATKFGSCFNVKTFKKPRAQNNLWAS------TVSIGCELVKFDEATVDTLKVSL-SETNEKYEFLETMYAAMMHSSNEPGVTYRALKLQTVKEFYLETILD 717
L+ A +E+++ D + RK I +A+ A D GLAKE+CDR R ++D +R M ++FN S DR +LLD +++ + K + I+HE VEF+ LFF +ESI+ R N LEY ATPS M AR ++EKHAS+IA G CF +K KK R + NL+ + T ++G + V F D L SL S + E FL+ ++A + S P T +KL + K F LE +LD
Sbjct: 17 LTKACMEFMKAEVFDKDPASDRKARIAFCVAMSIATDRAQTGLAKEICDRLRKVEDLNRHLMVEVFNLSIVTDRVCILLDDVIIHR-KHVSKDIQHELCVEFVLLFFGIVESILRRGHHHGNNNHDFAFGELEYATSATPSDMTNARDILEKHASAIAAMCGPCFKLKALKKSRPRLNLFPAHGAPPQTTTLGTDPVDFAGCGFDVLTSSLLSNSKETDTFLDIIFAIVSLSHKTPADTLETIKLNSTKTFLLENVLD 273
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Match: A0A6H5JWP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP0_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.180e-17 Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 79 MYIAVLKA------QDSDGLAKEVCDRFRCLDDFDRGAMTKIFNFSTCNDRTKLLLDKIMVLKTKRIHPAIEHEFQVEFISLFFDAMESIVSREQPLTNLEYVDKAT 381
M++AV+ A + GL KE+CDRFR L DFDR MT++F+ S NDR ++LL+ +V + K I I HEF VEF+ LFF +E++V + L + ++D AT
Sbjct: 1 MHVAVIVATSMATGEAERGLDKEICDRFRRLQDFDRKVMTELFHLSIVNDRVRVLLEDALVRRKKTIGIDIRHEFSVEFVLLFFGVVENVVRTGRRLGDQGHIDIAT 107 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1169.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1169.25.1 >prot_P-littoralis_Contig1169.25.1 ID=prot_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp LSLAAVEYLRRGFADHNTFVRKINIDMYIAVLKAQDSDGLAKEVCDRFRCback to top mRNA from alignment at P-littoralis_Contig1169:59236..59966+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1169.25.1 ID=mRNA_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=731bp|location=Sequence derived from alignment at P-littoralis_Contig1169:59236..59966+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1169:59236..59966+ >mRNA_P-littoralis_Contig1169.25.1 ID=mRNA_P-littoralis_Contig1169.25.1|Name=mRNA_P-littoralis_Contig1169.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig1169:59236..59966+ (Pylaiella littoralis U1_48)back to top |