mRNA_P-littoralis_Contig1168.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1168.15.1
Unique NamemRNA_P-littoralis_Contig1168.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.000e-58
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVVRFYAKVMGRRGARPTIHSILHVTDTIREH 432
            M+Q    LYP GT +LKDIV+NYSSLTGSDKWTLQSIMLLVFRPVL      V ++ MKRQ++ DL ++WGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLAR+VV FY+KVMGR G+RPTIHSILH T+ IR H
Sbjct:    1 MSQTPSLLYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVL------VMKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRPTIHSILHTTEAIRAH 138          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 6.820e-52
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVVRFYAKVMGRRGARPTIHSILHVTDTIREH 432
            +AQ    LYP GT +LKDIV NYSSLTGSDKWTLQSIMLLVFRPVL +V +M  ++ MKRQ++ +L D+WGT EKVL+VL+ LI+  SHLS AVRAPS+N LEL  LDLLAR+VV  Y+KV+GR G+RPTIHS+LH +  IR H
Sbjct:  558 VAQNPSLLYPAGTERLKDIVTNYSSLTGSDKWTLQSIMLLVFRPVLANVGAM--KKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDVVGVYSKVLGRTGSRPTIHSVLHTSQAIRAH 699          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.090e-45
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVVR 348
            M+Q    LYP GT +LKDIV+NYSSLTGSDKWTLQSIMLLVFRPVL+DVR+M  ++ MKRQ++ DL +IWGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLAR+VVR
Sbjct:   45 MSQTPSLLYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLQDVRAM--KKNMKRQDINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVR 158          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 6.380e-45
Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVVRFYAKVMGRRGARPTIHSILHVTDTIREH 432
            MAQ+   LYPPGT +LKDIV NY+SLTGSDKWTLQSIMLLVFR VL++V +M        +E+ DL   WGT+E VL+ LR L++  S LS A+RAPS+   EL  LD LAR+ V  + K+MGR G+RPTIHSILH  + IR H
Sbjct:  115 MAQKPPLLYPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMT-------REINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFKIMGRTGSRPTIHSILHTVEAIRLH 251          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.400e-44
Identity = 88/146 (60.27%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNV--VRFYAKVMGRRGARPTIHSILHVTDTIREH 432
            MAQ++  LYPPGT++LKDI+ +Y SLTGSDKWTLQSIMLLVFR VL+D+ SM  RR MK++++      WGT+E VLD LR LIQ  S LSFA+RAPSYN  EL  LD LAR+   V  ++++MGR G+RPTIHS+LH  + IR H
Sbjct:  283 MAQKSSLLYPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSM--RRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLH 426          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.720e-44
Identity = 86/144 (59.72%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVVRFYAKVMGRRGARPTIHSILHVTDTIREH 432
            MAQ+   LYPPGT ++KDIV NY+SLTGSDKWTLQSIMLLVFR VL++V +M  RR M  +E+  L   WGT+E +L+ LR L+   S LSFA+RAPS+   EL  LD LAR+ V  ++K+MGR G+RPTIHSILH  +TIR H
Sbjct:  851 MAQKPSLLYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAM--RRNMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLH 992          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.350e-39
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNVV 345
            M+Q    LYP GT +LKD+V+NYSSLTGSDKWTLQSIMLLVFRPV +D R+M  ++ MKRQ + DL +IWGT  KVL+VL+ L+Q  SHLS+AVRAPS+N  EL  LDLLAR+VV
Sbjct:  375 MSQTPSLLYPAGTERLKDMVSNYSSLTGSDKWTLQSIMLLVFRPVFQDFRAM--KKNMKRQNINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 487          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.020e-35
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARNV--VRFYAKV 363
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+LL+FR VL+DV +M  RR MK +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LAR+   VR  A+V
Sbjct:  144 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAM--RRNMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARDAEYVRTPARV 264          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5KBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.280e-35
Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARN 339
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+LL+FR VL+DV +M  RR M  +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LA +
Sbjct:   14 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAM--RRNMMTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLAHD 124          
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.130e-34
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVRSMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYNGLELENLDLLARN 339
            MAQ+   LYPPGT +LKD+V NY+SL GSDKWTLQSI+LL+FR VL+DV +M  RR MK +E+ DL+  WGT++KVL+ LR L++  S LSFA+RAPS+   EL  LD LAR+
Sbjct:  331 MAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAM--RRNMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 441          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1168.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH37_ECTSI2.000e-5866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9E1_9PHAE6.820e-5265.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD2_9PHAE1.090e-4568.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE6.380e-4558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE3.400e-4460.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE4.720e-4459.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D4_ECTSI1.350e-3966.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDY2_9PHAE1.020e-3558.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBT3_9PHAE1.280e-3558.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE4.130e-3460.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1168contigP-littoralis_Contig1168:44845..46068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789485.7761543-CDS-P-littoralis_Contig1168:44844..450061680789485.7761543-CDS-P-littoralis_Contig1168:44844..45006Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 44845..45006 +
1680789485.7937145-CDS-P-littoralis_Contig1168:45437..456211680789485.7937145-CDS-P-littoralis_Contig1168:45437..45621Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 45438..45621 +
1680789485.8080518-CDS-P-littoralis_Contig1168:45982..460681680789485.8080518-CDS-P-littoralis_Contig1168:45982..46068Pylaiella littoralis U1_48CDSP-littoralis_Contig1168 45983..46068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1168.15.1prot_P-littoralis_Contig1168.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1168 44845..46068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1168.15.1

>prot_P-littoralis_Contig1168.15.1 ID=prot_P-littoralis_Contig1168.15.1|Name=mRNA_P-littoralis_Contig1168.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MAQEAGQLYPPGTNQLKDIVANYSSLTGSDKWTLQSIMLLVFRPVLEDVR
SMVSRRCMKRQELTDLLDIWGTWEKVLDVLRGLIQAGSHLSFAVRAPSYN
GLELENLDLLARNVVRFYAKVMGRRGARPTIHSILHVTDTIREH
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mRNA from alignment at P-littoralis_Contig1168:44845..46068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1168.15.1 ID=mRNA_P-littoralis_Contig1168.15.1|Name=mRNA_P-littoralis_Contig1168.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1224bp|location=Sequence derived from alignment at P-littoralis_Contig1168:44845..46068+ (Pylaiella littoralis U1_48)
ATGGCCCAAGAGGCGGGGCAGCTGTACCCACCGGGCACTAACCAGCTCAA GGACATCGTGGCAAACTATTCATCTCTCACCGGTAGTGACAAATGGACGC TACAGTCGATTATGCTCCTAGTCTTCCGGCCGGTCCTGGAAGATGTCCGA TCTATGGTAAGTGTTGACGTGTGTGTCGTATGGGATGACGGAAAAAGTGT GTGCTGAATTCAAACGCCTTCGAATGCCAAAACGTCGCCGGGGGGAATGG ATAACACGCATGATAGCCGCGTAATATGGGCCTGTTTTCAGCACAACTCC ACTCTGCGCTCGAATGTGGATTTGAAAGGGCCGGAAAAGTCGCCTCTGTA CACATCCAGTCGAAAGCCGGATAACATCGCCACAATTTTGTACATGTTCG TACTCCGCATTTAGCGCACTTTTTGGCTGCGGAAAGACCGGCCTTAATTA GCTGCCATGATTGGATGTTGAGCTTCTCATTTACACTTTTAGTCAAGGGC GTCTCAACCTGAAAACGGGATACATTCGCGATGTGCTTGTGTTGTTTCGA CCTTAACCCTGGCTTCCGTCTTGGGCACGTTGGGGTGTGGCAGAGGCGTT GTATGAAACGGCAGGAACTCACGGACTTGCTGGACATTTGGGGAACATGG GAGAAGGTGCTCGATGTACTGCGGGGGCTGATTCAGGCGGGATCTCACCT TTCGTTCGCTGTTCGTGCACCTTCTTACAACGGCCTCGAGTTGGAGAACC TCGACCTACTCGCTCGGAACGTGGTTCGTACCTCGTTGTCGTAAAAGTGC CGAGCTAACCCTAAATACTTTTCGGCACGTCGCGTTGAATGTGCAGGGTA AACGGACCGCCGGCAGTAGCACGACAGCAGTACAATCTCTTTGGCGGAAT GACTAAAGTGCTTGGGGTCGCTTTGGCCGAATGACTATAGTGCTTAGGGT TGCTTTGGCGGCACGACTTAGCTGCTTGGGGTCGGTGATCTCATACCAGT CGGGGATCCTACATTCCCCGACAATACCTTTTCGAAACTGGCTGTACGCA AGGCACCGACGTCGGTCGCCATTAAAATGTGTCTAGGCCTGCAAAACACT CATGAAAGCGCCTTGAACTTGTCGGTGTGTTCAGGTAGGGTTCTACGCCA AAGTGATGGGGAGGAGAGGAGCTCGGCCTACGATCCACTCCATTTTGCAC GTCACCGACACCATCAGGGAACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1168:44845..46068+

>mRNA_P-littoralis_Contig1168.15.1 ID=mRNA_P-littoralis_Contig1168.15.1|Name=mRNA_P-littoralis_Contig1168.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1168:44845..46068+ (Pylaiella littoralis U1_48)
ATGGCCCAAGAGGCGGGGCAGCTGTACCCACCGGGCACTAACCAGCTCAA
GGACATCGTGGCAAACTATTCATCTCTCACCGGTAGTGACAAATGGACGC
TACAGTCGATTATGCTCCTAGTCTTCCGGCCGGTCCTGGAAGATGTCCGA
TCTATGGTAAGTAGGCGTTGTATGAAACGGCAGGAACTCACGGACTTGCT
GGACATTTGGGGAACATGGGAGAAGGTGCTCGATGTACTGCGGGGGCTGA
TTCAGGCGGGATCTCACCTTTCGTTCGCTGTTCGTGCACCTTCTTACAAC
GGCCTCGAGTTGGAGAACCTCGACCTACTCGCTCGGAACGTGGTTCGGTT
CTACGCCAAAGTGATGGGGAGGAGAGGAGCTCGGCCTACGATCCACTCCA
TTTTGCACGTCACCGACACCATCAGGGAACAC
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