mRNA_P-littoralis_Contig1165.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1165.14.1
Unique NamemRNA_P-littoralis_Contig1165.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.060e-16
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            HI  PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:   82 HIVEPPSQAASPVPQDDAGLPLSSTGARARQEALKAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.590e-16
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            HI  PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:  724 HIVEPPSQAASPVPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPERLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 843
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.290e-15
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            H   PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:   82 HSVEPPSQAASPLPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5JEY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.940e-15
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            HI  PPS     +  DD   P+SST ARARQ+AL   D   A    +RI  +MDK ++  L++   +  GP  P+ F++F SS + V  ++L  S  +R+Q+I S  W  GWL  LRKRVR
Sbjct:   82 HIVEPPSQAASPVPQDDAGWPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKQKREQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSGVKRKQTINSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-14
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            HI  PP      +  DD  LP++ST+ARARQ+ALD  D        +RI  +MDK++    ++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:  183 HIVEPPGQAASPLPQDDAGLPLTSTRARARQEALDAADAAATEADIIRIQDKMDKLKPEQRDSIIRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 302
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5L698_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L698_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.830e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   43 DDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 354
            DD  L ++ST ARARQ+AL+  D        +RI  +MDK++   L++   +  GP  P  FS+F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:    4 DDAGLSLTSTGARARQEALNAADAAATEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPGEFSRFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 108
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BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5KYW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-10
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   43 DDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWL 330
            DD  LP+SST ARARQ+ALD  D   A    +RI  +MDK++   L++   +  GP  P+ FS+F  S + V  ++L  SD +R+Q+  S     GWL
Sbjct:  279 DDAGLPLSSTGARARQEALDAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFSRFAPSCKGVVTEILKKSDVKRKQTFKSSTSVTGWL 375
[Close]
BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5KFU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.050e-8
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQRE 291
            HI  PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+
Sbjct:  235 HIVEPPSQAASPVPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRK 333
[Close]
BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Match: A0A6H5JMJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.090e-8
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:   13 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILS 306
            HI  PPS     +   D  LP+SST ARARQ+AL   D   A    +R+  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S
Sbjct:   22 HIVEPPSQAASPVPQGDAGLPLSSTGARARQEALHAADAAAAEADTIRLQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNS 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1165.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K8W4_9PHAE5.060e-1642.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KHE6_9PHAE9.590e-1642.15Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQN2_9PHAE4.290e-1541.32NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEY5_9PHAE5.940e-1541.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L9_9PHAE1.250e-1439.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L698_9PHAE8.830e-1341.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYW7_9PHAE1.590e-1040.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU7_9PHAE5.050e-839.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMJ9_9PHAE6.090e-837.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1165contigP-littoralis_Contig1165:56925..57284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size361
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.5330968-CDS-P-littoralis_Contig1165:56924..572841680789484.5330968-CDS-P-littoralis_Contig1165:56924..57284Pylaiella littoralis U1_48CDSP-littoralis_Contig1165 56925..57284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1165.14.1prot_P-littoralis_Contig1165.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1165 56925..57284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1165.14.1

>prot_P-littoralis_Contig1165.14.1 ID=prot_P-littoralis_Contig1165.14.1|Name=mRNA_P-littoralis_Contig1165.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
QFEPHIHPPPSIVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQ
QMDKIRQNDLEAFHNVGPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSI
LSERWAPGWLHHLRKRVRTG
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mRNA from alignment at P-littoralis_Contig1165:56925..57284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1165.14.1 ID=mRNA_P-littoralis_Contig1165.14.1|Name=mRNA_P-littoralis_Contig1165.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1165:56925..57284+ (Pylaiella littoralis U1_48)
CAGTTCGAACCGCATATCCACCCGCCGCCGTCTATTGTGCACGACGATCG
TGCTCTTCCTGTGTCGTCCACTCAAGCTCGTGCCCGCCAAGACGCTTTAG
ATTTAGATGACCGCGAAACTGCCCGGCAGCGCAACCTTCGCATCGGCCAA
CAGATGGACAAGATTCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGG
GCCTTGCAGCCCTGAGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACG
TGACCAACGATTTGTTGACTTTGAGTGACAGTCAACGCGAGCAATCCATT
CTCTCCGAACGATGGGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGT
GCGCACTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1165:56925..57284+

>mRNA_P-littoralis_Contig1165.14.1 ID=mRNA_P-littoralis_Contig1165.14.1|Name=mRNA_P-littoralis_Contig1165.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1165:56925..57284+ (Pylaiella littoralis U1_48)
CAGTTCGAACCGCATATCCACCCGCCGCCGTCTATTGTGCACGACGATCG
TGCTCTTCCTGTGTCGTCCACTCAAGCTCGTGCCCGCCAAGACGCTTTAG
ATTTAGATGACCGCGAAACTGCCCGGCAGCGCAACCTTCGCATCGGCCAA
CAGATGGACAAGATTCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGG
GCCTTGCAGCCCTGAGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACG
TGACCAACGATTTGTTGACTTTGAGTGACAGTCAACGCGAGCAATCCATT
CTCTCCGAACGATGGGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGT
GCGCACTGGC
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