mRNA_P-littoralis_Contig1156.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1156.23.1
Unique NamemRNA_P-littoralis_Contig1156.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-11
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
            SKK+  K ++ + C  L+  G     RC A AK+     CG   + H +   + R        G    E +++P GDE  SDGGS+GE PGDLADYDE      +  + NA V      KIPE WG+ +LK +F L
Sbjct:  383 SKKKHGKRKRRETCNALFASGKRQRQRCGAEAKSP----CGTLCSMHSKKGGQNRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGKAALKFVFEL 509          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.230e-11
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
            SKK+  K ++ + C  L+  G   G RC A AK+     CG   +   +   + R        G    E +++P GDE  SDGGS+GE PGDLADYDE      +  + NA V      KIPE WG  +LK +F L
Sbjct:   48 SKKKHGKRKRRETCNPLFASGKRQGQRCGAEAKSP----CGTLCSMRSKKGGENRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGMAALKFVFEL 174          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.170e-9
Identity = 51/137 (37.23%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
            SKK+R K  +   C   +  G   G  C A AK+     CG   N+H R  ++ R        G   AE  ++  GD+  SDGGSEGE PGD  DYD+D  V      G +  Q +A+  KI E WG+E+L  +F L
Sbjct:  345 SKKQRGKRGRRSTCTATFASGPKQGGPCGAEAKSP----CGMFCNEHSRQGSRSRTCGRGGKGGDDEAEYEQELEGDDDMSDGGSEGEFPGDAVDYDQDVFVS-----GKSPQQVKAMVDKIQEAWGKEALAFIFGL 472          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K8V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.340e-9
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   34 DKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
            D C   +  G   G  C A AK+     CG   N+H R  ++ R        G   AE  ++P GD+   DGGSEG +PGD ADYD+D  V      G +  Q +A+  KI E WG+E+L  +F L
Sbjct:  265 DTCTATFASGPKQGKPCGAEAKSP----CGMFCNKHSRQGSRSRTCGSGGKGGDDEAEYEQEPEGDDDMRDGGSEGWIPGDAADYDQDVFVS-----GKSPQQVKAMVDKIEEAWGKEALNFIFGL 381          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-7
Identity = 50/137 (36.50%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
            SKK+R K  +   C   +  G   G+ C A  K+    +C  H+ Q  R        R  +G G   AE  ++  G+   SDGGSEGE PGD ADYD+D  V      G +  Q  A+  KI E WG+E+L  +F L
Sbjct:  361 SKKKRGKRGRRSTCTSTFASGPKQGEPCGAEEKSPCGMFCIMHSRQGSRDRTC---GRGGKG-GDDEAEYEQEAEGNHDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVNAMVDKIQEAWGKEALTFIFGL 488          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-7
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 1
Query:    1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDE 294
            SKK+  K ++ + C  L+  GN  G RC A AK+     CG   + H +   + R             E ++DP GDE  SDGGS+GE P DLADYDE
Sbjct:  451 SKKKHGKRKRRETCHALFASGNRQGQRCGAEAKSP----CGVLCSMHSKKGGQNRTCGRGENGRDDETEYVQDPEGDEEMSDGGSDGEFPWDLADYDE 544          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.790e-6
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
            G   AE  ++P GD+  SDGGSEGE PGD ADYD+D  V      G +  Q +A+  KI E WG+E+L  +F L
Sbjct:  351 GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVKAMVDKIQEAWGKEALTFIFGL 419          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5KDI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.000e-6
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  217 DPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
            +P GDE  SDGGS+GE PGDLADYDE      +  + NA V      K PE WGR +LK +F L
Sbjct:  410 EPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSSQQINAMVD-----KKPEGWGRAALKFVFEL 468          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.000e-5
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
            G    E ++DP GDE  SDGGS+GE PG LA+YDE      +  + NA V      KIPE WG+ +L+ +F L
Sbjct:  303 GDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYDEPSVTIKSPQQINAMVD-----KIPEGWGKPALRFVFEL 370          
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-5
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
            G   AE  ++P GD+  SDGGSEGE PGD ADYD+D  V      G +  Q +A+  KI E W +E+L  +F L
Sbjct:  497 GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVKAMVDKIQEAWAKEALTFIFGL 565          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FZ42_ECTSI1.220e-1137.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G347_ECTSI1.230e-1137.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFP3_9PHAE3.170e-937.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8V2_9PHAE8.340e-937.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU5_9PHAE3.530e-736.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE3.550e-739.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B3_9PHAE2.790e-647.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDI1_9PHAE3.000e-651.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9N7_9PHAE1.000e-545.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIB8_9PHAE2.000e-545.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1156contigP-littoralis_Contig1156:63446..63853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789476.7693558-CDS-P-littoralis_Contig1156:63445..638531680789476.7693558-CDS-P-littoralis_Contig1156:63445..63853Pylaiella littoralis U1_48CDSP-littoralis_Contig1156 63446..63853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1156.23.1prot_P-littoralis_Contig1156.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1156 63446..63853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1156.23.1

>prot_P-littoralis_Contig1156.23.1 ID=prot_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRI
TAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDG
EVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL
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mRNA from alignment at P-littoralis_Contig1156:63446..63853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1156.23.1 ID=mRNA_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig1156:63446..63853+ (Pylaiella littoralis U1_48)
TCGAAGAAGAGGCGCATCAAAATCGAAAAAAATGACAAGTGCAAGGGCCT TTACGAGGGCGGTAACAATGCGGGAGATCGATGTCGTGCTCTTGCCAAAG CCGATAACAATGGCTACTGCGGGCGCCACACGAACCAACATGACAGGATT ACCGCAAAAAAACGCAAGTCAAGGCCGTCTCGCGGCCCTGGTAGCGGTGC TGCCGAGGAATTGAAAGACCCTGTAGGAGACGAGTACCAAAGTGACGGTG GCAGTGAAGGAGAGCTACCCGGCGACCTTGCCGACTACGATGAAGACGGA GAGGTGCAGGTTGCCTTGGGCAAGGGGAACGCAGCCGTACAAGCCAGGGC GTTGGCAAAGATTCCGGAACGTTGGGGGCGCGAGTCTTTGAAGTGCATGT TCCGCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1156:63446..63853+

>mRNA_P-littoralis_Contig1156.23.1 ID=mRNA_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig1156:63446..63853+ (Pylaiella littoralis U1_48)
TCGAAGAAGAGGCGCATCAAAATCGAAAAAAATGACAAGTGCAAGGGCCT
TTACGAGGGCGGTAACAATGCGGGAGATCGATGTCGTGCTCTTGCCAAAG
CCGATAACAATGGCTACTGCGGGCGCCACACGAACCAACATGACAGGATT
ACCGCAAAAAAACGCAAGTCAAGGCCGTCTCGCGGCCCTGGTAGCGGTGC
TGCCGAGGAATTGAAAGACCCTGTAGGAGACGAGTACCAAAGTGACGGTG
GCAGTGAAGGAGAGCTACCCGGCGACCTTGCCGACTACGATGAAGACGGA
GAGGTGCAGGTTGCCTTGGGCAAGGGGAACGCAGCCGTACAAGCCAGGGC
GTTGGCAAAGATTCCGGAACGTTGGGGGCGCGAGTCTTTGAAGTGCATGT
TCCGCTTG
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