mRNA_P-littoralis_Contig1156.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.220e-11 Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
SKK+ K ++ + C L+ G RC A AK+ CG + H + + R G E +++P GDE SDGGS+GE PGDLADYDE + + NA V KIPE WG+ +LK +F L
Sbjct: 383 SKKKHGKRKRRETCNALFASGKRQRQRCGAEAKSP----CGTLCSMHSKKGGQNRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGKAALKFVFEL 509
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.230e-11 Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
SKK+ K ++ + C L+ G G RC A AK+ CG + + + R G E +++P GDE SDGGS+GE PGDLADYDE + + NA V KIPE WG +LK +F L
Sbjct: 48 SKKKHGKRKRRETCNPLFASGKRQGQRCGAEAKSP----CGTLCSMRSKKGGENRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGMAALKFVFEL 174
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 3.170e-9 Identity = 51/137 (37.23%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
SKK+R K + C + G G C A AK+ CG N+H R ++ R G AE ++ GD+ SDGGSEGE PGD DYD+D V G + Q +A+ KI E WG+E+L +F L
Sbjct: 345 SKKQRGKRGRRSTCTATFASGPKQGGPCGAEAKSP----CGMFCNEHSRQGSRSRTCGRGGKGGDDEAEYEQELEGDDDMSDGGSEGEFPGDAVDYDQDVFVS-----GKSPQQVKAMVDKIQEAWGKEALAFIFGL 472
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K8V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V2_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 8.340e-9 Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 34 DKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
D C + G G C A AK+ CG N+H R ++ R G AE ++P GD+ DGGSEG +PGD ADYD+D V G + Q +A+ KI E WG+E+L +F L
Sbjct: 265 DTCTATFASGPKQGKPCGAEAKSP----CGMFCNKHSRQGSRSRTCGSGGKGGDDEAEYEQEPEGDDDMRDGGSEGWIPGDAADYDQDVFVS-----GKSPQQVKAMVDKIEEAWGKEALNFIFGL 381
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 3.530e-7 Identity = 50/137 (36.50%), Postives = 67/137 (48.91%), Query Frame = 1
Query: 1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
SKK+R K + C + G G+ C A K+ +C H+ Q R R +G G AE ++ G+ SDGGSEGE PGD ADYD+D V G + Q A+ KI E WG+E+L +F L
Sbjct: 361 SKKKRGKRGRRSTCTSTFASGPKQGEPCGAEEKSPCGMFCIMHSRQGSRDRTC---GRGGKG-GDDEAEYEQEAEGNHDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVNAMVDKIQEAWGKEALTFIFGL 488
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 3.550e-7 Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 1
Query: 1 SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRITAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDE 294
SKK+ K ++ + C L+ GN G RC A AK+ CG + H + + R E ++DP GDE SDGGS+GE P DLADYDE
Sbjct: 451 SKKKHGKRKRRETCHALFASGNRQGQRCGAEAKSP----CGVLCSMHSKKGGQNRTCGRGENGRDDETEYVQDPEGDEEMSDGGSDGEFPWDLADYDE 544
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 2.790e-6 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
G AE ++P GD+ SDGGSEGE PGD ADYD+D V G + Q +A+ KI E WG+E+L +F L
Sbjct: 351 GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVKAMVDKIQEAWGKEALTFIFGL 419
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5KDI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI1_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 3.000e-6 Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 217 DPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
+P GDE SDGGS+GE PGDLADYDE + + NA V K PE WGR +LK +F L
Sbjct: 410 EPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSSQQINAMVD-----KKPEGWGRAALKFVFEL 468
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 1.000e-5 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRL 408
G E ++DP GDE SDGGS+GE PG LA+YDE + + NA V KIPE WG+ +L+ +F L
Sbjct: 303 GDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYDEPSVTIKSPQQINAMVD-----KIPEGWGKPALRFVFEL 370
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 2.000e-5 Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 190 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYDEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRL 408
G AE ++P GD+ SDGGSEGE PGD ADYD+D V G + Q +A+ KI E W +E+L +F L
Sbjct: 497 GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQDVFVS-----GKSPQQVKAMVDKIQEAWAKEALTFIFGL 565 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1156.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1156.23.1 >prot_P-littoralis_Contig1156.23.1 ID=prot_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp SKKRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTNQHDRIback to top mRNA from alignment at P-littoralis_Contig1156:63446..63853+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1156.23.1 ID=mRNA_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig1156:63446..63853+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1156:63446..63853+ >mRNA_P-littoralis_Contig1156.23.1 ID=mRNA_P-littoralis_Contig1156.23.1|Name=mRNA_P-littoralis_Contig1156.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig1156:63446..63853+ (Pylaiella littoralis U1_48)back to top |