mRNA_P-littoralis_Contig1152.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY) HSP 1 Score: 55.5 bits (132), Expect = 2.220e-5 Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 43 GAEDGKPSAKGPMCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKCGSPADMRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVTRSFGMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGY 507
G G+P +CYNCRG+GH AR+C K K Q D +PA N A E G SA+ P DSGAS ++ FR N + + + G GD+ + + + + L+ +++ Y P+ A+ L+S+ + GY
Sbjct: 549 GPSGGRPPV---ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKRVDEGGY 711
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC) HSP 1 Score: 55.1 bits (131), Expect = 2.650e-5 Identity = 40/148 (27.03%), Postives = 64/148 (43.24%), Query Frame = 1
Query: 76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSFGMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFE 516
P+C+NC+ IGH A+DC + R + + + ++ +N + W +DSGA T ++ ++ N R N V P I G VDL++D M+V +VP F + LS SQ + G+ E
Sbjct: 206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQYSDRVVNIASNSIL------------ANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM) HSP 1 Score: 55.1 bits (131), Expect = 2.770e-5 Identity = 45/171 (26.32%), Postives = 72/171 (42.11%), Query Frame = 1
Query: 79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKCGSPADMRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVTRSFGMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYDLLSMSQCVRQGYKFETDDPGMLVTKTS 552
C+NC G+GHFA+DC KR ++ DK S + P DS V L + +++DS + V + + NF+ + I+G GDI + + D+ + + +KN Y P F +L+S S+C + Y T V KT+
Sbjct: 263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKCDKASYDVHTHKGIKSVYKTN 432
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC) HSP 1 Score: 55.1 bits (131), Expect = 2.880e-5 Identity = 40/148 (27.03%), Postives = 64/148 (43.24%), Query Frame = 1
Query: 76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSFGMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFE 516
P+C+NC+ IGH A+DC + R + + + ++ +N + W +DSGA T ++ ++ N R N V P I G VDL++D M+V +VP F + LS SQ + G+ E
Sbjct: 206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQYSDRVVNIASNSIL------------ANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR) HSP 1 Score: 53.5 bits (127), Expect = 9.580e-5 Identity = 43/178 (24.16%), Postives = 84/178 (47.19%), Query Frame = 1
Query: 79 MCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELP-DCDSGSAVGLEPWHVDSGASGTVTRS---FGMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYDLLSMSQCVRQGYKFETDDPGMLVTKTSTGE--QLLMRPDNDLY 594
CYNC GH DC + + + ++D+ + R +A+ +C+ + W +DSG S +T F M N P + + G + + Q++ +G I +++++ +L V+ + P Y+LLS+ Q ++ GY+ D+ +T TG+ ++ R N+L+
Sbjct: 343 QCYNCNQFGHIKADCWNEPQAQAAVQDEEDDE-----EYRLFMAIGCEKNCEQ------DVWFLDSGCSNHMTPKRDIFTCMYN-TPKHHVKLG-NGKSIQVENKGKIKLEVEAGKYRVLDDVQ---FAPELGYNLLSVGQLMKAGYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLF 504 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1152.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1152.2.1 >prot_P-littoralis_Contig1152.2.1 ID=prot_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp RGNNRKKKSSDGKDGAEDGKPSAKGPMCYNCRGIGHFARDCTVKICKRCQback to top mRNA from alignment at P-littoralis_Contig1152:16496..17266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1152.2.1 ID=mRNA_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig1152:16496..17266- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1152:16496..17266- >mRNA_P-littoralis_Contig1152.2.1 ID=mRNA_P-littoralis_Contig1152.2.1|Name=mRNA_P-littoralis_Contig1152.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1152:16496..17266- (Pylaiella littoralis U1_48)back to top |