mRNA_P-littoralis_Contig1151.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1151.9.1
Unique NamemRNA_P-littoralis_Contig1151.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1151.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1151contigP-littoralis_Contig1151:42603..43717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size362
Hectar predicted targeting categoryother localisation
Exons3
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.1112623-CDS-P-littoralis_Contig1151:42603..426741680789474.1112623-CDS-P-littoralis_Contig1151:42603..42674Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 42604..42674 -
1680789474.1278455-CDS-P-littoralis_Contig1151:43044..431471680789474.1278455-CDS-P-littoralis_Contig1151:43044..43147Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 43045..43147 -
1680789474.1389205-CDS-P-littoralis_Contig1151:43531..437171680789474.1389205-CDS-P-littoralis_Contig1151:43531..43717Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 43532..43717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1151.9.1prot_P-littoralis_Contig1151.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1151 42604..43717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1151.9.1

>prot_P-littoralis_Contig1151.9.1 ID=prot_P-littoralis_Contig1151.9.1|Name=mRNA_P-littoralis_Contig1151.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
ATCVVNAEGKLEVPYCFSYSQNIADVTCTGDDEGNPQPFQAIPGAPAKCQ
CDSFDLGDQVCSVNLNQNADELQPLCTVDGLTNIVIAGADIAFVGAGDTF
EYEISPGNGPQDYSAGDNIE
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mRNA from alignment at P-littoralis_Contig1151:42603..43717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1151.9.1 ID=mRNA_P-littoralis_Contig1151.9.1|Name=mRNA_P-littoralis_Contig1151.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1115bp|location=Sequence derived from alignment at P-littoralis_Contig1151:42603..43717- (Pylaiella littoralis U1_48)
GCTACGTGCGTGGTGAACGCCGAGGGAAAACTTGAGGTCCCCTACTGCTT
CAGCTACTCACAGAATATCGCTGACGTCACCTGTACCGGGGATGACGAAG
GCAATCCTCAACCGTTTCAGGCCATCCCCGGCGCCCCTGCCAAGTGTCAG
TGCGATAGCTTCGATCTGGGTGACCAAGTTTGCTCGGTGAGCCCTTTCTC
TCATTTTACTGTCTTACACACTAGCGTGGCGTCTTGAGTGCCGTCTGAGT
GAACCGAAATAATGATTTTTATTACGCAATTTGAACTAAGAGTTTACCCC
CATACGCTGAGGTCAACAAAAGGCGGAATTAACTCAGGGAAATAACGGGT
GATTTGTGTTCAGTTTCCAGTGTTCGCCTACACCTACCGATTAATCAAAA
TCCATTGACTCGTGCTCCGTATTGGTACGATTGGGCGCACCTCGACTTGT
TGAACTGAATTCACCGCCGACTTCACGTTTTGTGTTGTTTTCGGCGCCGG
ACCACGTCCCGAACATGGCTCCTTCCGTTCCTTGAATCCACTAGTTCTTC
CGCCCCGCTGCCGACGCCAGGTCAACTTGAATCAAAACGCGGATGAGTTG
CAGCCTCTCTGCACCGTCGACGGGCTGACCAATATCGTTATCGCCGGGGC
CGACATCGCTTTCGTGGGCGCTGGTGAGTCCACCGCATGACGACCCCATA
CCGGTAAGACTTGCTGATTCCATGCGTCAAGTTGATGCGTCCGAATTATT
CGTTTATCAGGGATCTTTGTTCCGGTTTTTTGACGCAATTAGTGTTGCCG
TCGATCCTGGAGATAAAATTCAATTCGAATGCAAGTTTCCGATCAAATTG
TTTGAAGCGCCTGTAGCTTTGCATTCCCTTCTCGCCTTCCAAGAATCTTG
AAATCCATCGCTCTGGTCTATCAAAAACCCTCGTGCGAGCCCCCTCGGCG
GCGGCGTACCTCGAGATATTAAGAAAACCATCGAAACCGACATGGTACTT
TTTGGTCCTTCCCCAAACGACTGGCCGGCCGCAACTTGTACAGGAGACAC
CTTCGAGTACGAGATATCCCCAGGAAACGGTCCTCAGGACTACTCTGCTG
GGGATAACATCGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1151:42603..43717-

>mRNA_P-littoralis_Contig1151.9.1 ID=mRNA_P-littoralis_Contig1151.9.1|Name=mRNA_P-littoralis_Contig1151.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig1151:42603..43717- (Pylaiella littoralis U1_48)
GCTACGTGCGTGGTGAACGCCGAGGGAAAACTTGAGGTCCCCTACTGCTT
CAGCTACTCACAGAATATCGCTGACGTCACCTGTACCGGGGATGACGAAG
GCAATCCTCAACCGTTTCAGGCCATCCCCGGCGCCCCTGCCAAGTGTCAG
TGCGATAGCTTCGATCTGGGTGACCAAGTTTGCTCGGTCAACTTGAATCA
AAACGCGGATGAGTTGCAGCCTCTCTGCACCGTCGACGGGCTGACCAATA
TCGTTATCGCCGGGGCCGACATCGCTTTCGTGGGCGCTGGAGACACCTTC
GAGTACGAGATATCCCCAGGAAACGGTCCTCAGGACTACTCTGCTGGGGA
TAACATCGAA
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