mRNA_P-littoralis_Contig1151.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1151.7.1
Unique NamemRNA_P-littoralis_Contig1151.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.420e-31
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   77 LLRDLLRQGASVSVADSDGYTALHH-VYHENLAVSKELIEGGANLEARPGGFMVDGVYGTPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAAVNGW---VRVLIRA 403
            ++RDLLRQGASVSVADSDG TALHH VYH +LAVSK+LIE GA+LEAR GG        TP HVAATKGF QGM  L+D      SRLDDGATPLF AA +G    VRVL+RA
Sbjct:   44 VVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG------KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRA 144          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.510e-26
Identity = 90/219 (41.10%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   77 LLRDLLRQGASVSVADSDGYTALHH-VYHENLAVSKELIEGGANLEARPGGFMVDGVYGTPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAAVNGWVRV-----------LIRARTLIRFWFGTAYSR*ERRYTMNIWKWSVSLCVGTEPIAVQATATHWLTWRPLFAST*IVPFLCDAGVVDTEGVTL*AAVEGCSAAYVAFLLGRQGGNA 697
            ++RDLLRQGASVS+ADSDGY ALHH VYH++LAVSK+LIE GA+L+ARPGG  +D    TP HVAATKGF Q M                                           L+ A                    +  W +    C         ATA              IV FLCDAGVVDTEGV L AA+EGCS A V  LL RQG  A
Sbjct:  434 VVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGG--ID----TPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYW-YGTDGCTSDGGALALATAASR-------NQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGRKA 638          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.010e-23
Identity = 87/233 (37.34%), Postives = 103/233 (44.21%), Query Frame = 2
Query:   77 LLRDLLRQGASVSVADSDGYTALHH-VYHENLAVSKELIEGGANLEARPGGFMVDGVYGTPDHVAATKGFYQGMVELIDAG-------------------------AKVDSRLDD-GATPLFFAAVNGWVRVLIRARTLIRFWFGTAYSR*ERRYTMNIWKWSVSLCVGTEPIAVQATATHWLTWRPLFAST*IVPFLCDAGVVDTEGVTL*AAVEGCSAAYVAFLLGRQGGN 694
            +++DLLRQGASVSVADSDGYTALHH VYH +LAVS  LIE GA+LEARPG                                                        A  +  L   G+ PL  A  NG ++V+      +  W+GT     +                G   +A  A+  H            IV FLCDAGVVDTEGV L AA+EGCS A V  LL RQGGN
Sbjct:   44 VVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSE----LVHWYGTDRCTNDG---------------GVLALATAASRKH----------VDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGN 247          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.300e-15
Identity = 81/234 (34.62%), Postives = 97/234 (41.45%), Query Frame = 2
Query:   77 LLRDLLRQGASVSVADSDGYTALHH-VYHENLAVSKELIEGGANLEARPGGFMVDGVYGTPDHVAATKGFYQGMVELIDAG-------------------------AKVDSRLDD-GATPLFFAAVNGWVRVLIRARTLIRFWFGTAYSR*ERRYTMNIWKWSVSLCVGTEPIAVQATATHWLTWRPLFAST*IVPFLCDAGVVDTEGVTL*AAVEGCSAAYVAFLLGRQGGNA 697
            ++RDLLRQGASVSVADSDGYTALHH VYH++LAVSK                                                                      A  +  L   G+ PL  A  +G + V+   R L+  W+GT       R T +          G   +A  A+  H            IV FLC+AGVVDTEGV L AA+EGCS A V  LL RQGGNA
Sbjct:  465 VVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVV---RELVH-WYGTD------RCTSD---------GGALALATAASRKH----------VDIVAFLCNAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNA 669          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.410e-8
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2
Query:   68 PRALLRDLLRQGASVSVADSDGYTALHH-VYHENLAVSK 181
            P  ++RDLLRQGASVSVADSDGYTALHH VYH++LAVSK
Sbjct:   47 PSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.800e-6
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  161 ENLAVSKELIEGGANLEARPGGFMV--DGVYG-TPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAAVNGW---VRVLIRAR 406
            +NLAV+K L++ GA+LEA+   F +  D   G TP H+AA   F +    L+ AGA V+ RL +GATPL+ +A  G    VR+LIR +
Sbjct:   14 DNLAVTKALVKAGADLEAKAACFTLGPDLTEGNTPLHLAAGGAFGEITTALVGAGANVNCRLKNGATPLYLSACCGRLGAVRILIRGK 101          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A7X3XUE7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XUE7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.550e-5
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:   80 LRDLLRQGASVSVADSDGYTALHHVYHEN-LAVSKELIEGGANLEA--RPGGFMVDGVYGTPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAA 370
            +R LLRQGA V+ A SDG TALH     N +A++K L+  GA   A  R GG+       TP H+A+  G  +    +++ GA  D     G T + FAA
Sbjct:   60 VRALLRQGADVNTAQSDGMTALHWAASNNDIAIAKALLYAGATYRATTRIGGY-------TPLHLASRGGHAEVARLILEDGADPDILTSTGVTAMHFAA 152          
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Match: A0A135THY4_9PEZI (Pfs domain-containing protein n=1 Tax=Colletotrichum simmondsii TaxID=703756 RepID=A0A135THY4_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 6.310e-5
Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   74 ALLRDLLRQGASVSVADSDGYTALHHV---YHENLAVSKEL---IEGGANLEAR--PGGFMVDGVYGTPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAAVNGWVRVLIRARTL 412
            A++R L+R GASV++ D  G+ A+HH+   Y++   + + L   +E GA++E+R  PG         TP  V+   G  +G   LI+AGAK      DG   L  AA+ G  + L    TL
Sbjct:  404 AIIRSLIRAGASVNITDQQGFYAIHHLTSSYNKGRVIRESLRVLLEAGADIESRNRPGR--------TPLLVSIQSGDCRGTQCLIEAGAKTTYVTRDGWGLLHEAALYGTTKTLRYLSTL 516          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1151.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LH66_ECTSI5.420e-3167.26EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1W5_9PHAE5.510e-2641.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE4.010e-2337.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE4.300e-1534.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE2.410e-882.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.800e-644.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X3XUE7_9BACT2.550e-539.00Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A135THY4_9PEZI6.310e-534.71Pfs domain-containing protein n=1 Tax=Colletotrich... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1151contigP-littoralis_Contig1151:34510..35206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP44
PFAMsAnk_2,Ank_4,Ank_5,HET,NACHT,NACHT_N
Model size697
Max annot lvl2759|Eukaryota
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-07
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size219
COG categoryI
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.2329352-UTR-P-littoralis_Contig1151:34509..347381680789474.2329352-UTR-P-littoralis_Contig1151:34509..34738Pylaiella littoralis U1_48UTRP-littoralis_Contig1151 34510..34738 +
1680789474.254006-UTR-P-littoralis_Contig1151:34957..352061680789474.254006-UTR-P-littoralis_Contig1151:34957..35206Pylaiella littoralis U1_48UTRP-littoralis_Contig1151 34958..35206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789474.242775-CDS-P-littoralis_Contig1151:34738..349571680789474.242775-CDS-P-littoralis_Contig1151:34738..34957Pylaiella littoralis U1_48CDSP-littoralis_Contig1151 34739..34957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1151.7.1prot_P-littoralis_Contig1151.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1151 34739..34957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1151.7.1

>prot_P-littoralis_Contig1151.7.1 ID=prot_P-littoralis_Contig1151.7.1|Name=mRNA_P-littoralis_Contig1151.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MVDGVYGTPDHVAATKGFYQGMVELIDAGAKVDSRLDDGATPLFFAAVNG
WVRVLIRARTLIRFWFGTAYSR*
back to top

mRNA from alignment at P-littoralis_Contig1151:34510..35206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1151.7.1 ID=mRNA_P-littoralis_Contig1151.7.1|Name=mRNA_P-littoralis_Contig1151.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=697bp|location=Sequence derived from alignment at P-littoralis_Contig1151:34510..35206+ (Pylaiella littoralis U1_48)
ACCGATATCAACCGAGGCTGTGGTGATACGAACCAGACCCCTCTGATGGT GGCCTCCATGATCGGTTCCTCGCGCGTTGTTAAGAGACCTTCTGCGGCAG GGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCACCA CGTTTATCACGAAAACCTGGCCGTCAGCAAAGAGCTGATCGAGGGAGGAG CGAACCTTGAAGCGAGGCCCGGTGGCTTTATGGTGGATGGTGTTTATGGT ACGCCAGATCACGTGGCCGCGACGAAAGGCTTTTACCAAGGAATGGTGGA GCTGATCGACGCAGGCGCGAAGGTGGACAGCAGGCTCGACGATGGAGCGA CACCTCTGTTTTTCGCGGCAGTAAACGGGTGGGTCAGGGTTCTCATTCGG GCGAGAACTCTGATCCGATTCTGGTTCGGTACGGCATACTCCCGCTAGGA AAGGCGGTATACAATGAACATCTGGAAGTGGTCCGTGAGCTTGTGCGTTG GTACGGAACCGATCGCTGTACAAGCGACGGCGACGCACTGGTTAACGTGG CGGCCACTTTTCGCGAGCACGTAAATTGTTCCATTTCTGTGCGATGCCGG TGTGGTTGATACGGAGGGCGTGACCCTGTGAGCTGCAGTTGAGGGCTGTA GCGCGGCGTATGTCGCCTTTCTTTTGGGGAGACAGGGTGGAAACGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1151:34510..35206+

>mRNA_P-littoralis_Contig1151.7.1 ID=mRNA_P-littoralis_Contig1151.7.1|Name=mRNA_P-littoralis_Contig1151.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig1151:34510..35206+ (Pylaiella littoralis U1_48)
ATGGTGGATGGTGTTTATGGTACGCCAGATCACGTGGCCGCGACGAAAGG
CTTTTACCAAGGAATGGTGGAGCTGATCGACGCAGGCGCGAAGGTGGACA
GCAGGCTCGACGATGGAGCGACACCTCTGTTTTTCGCGGCAGTAAACGGG
TGGGTCAGGGTTCTCATTCGGGCGAGAACTCTGATCCGATTCTGGTTCGG
TACGGCATACTCCCGCTAG
back to top