mRNA_P-littoralis_Contig1150.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1150.7.1
Unique NamemRNA_P-littoralis_Contig1150.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1150.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1150contigP-littoralis_Contig1150:23561..24199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.77e-09
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size534
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789473.9823241-CDS-P-littoralis_Contig1150:23560..237851680789473.9823241-CDS-P-littoralis_Contig1150:23560..23785Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 23561..23785 +
1680789473.9947603-CDS-P-littoralis_Contig1150:23889..241981680789473.9947603-CDS-P-littoralis_Contig1150:23889..24198Pylaiella littoralis U1_48CDSP-littoralis_Contig1150 23890..24198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1150.7.1prot_P-littoralis_Contig1150.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1150 23561..24198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1150.7.1

>prot_P-littoralis_Contig1150.7.1 ID=prot_P-littoralis_Contig1150.7.1|Name=mRNA_P-littoralis_Contig1150.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
ESDSDDEPVQDLHFAPNSHSNCFHNVAMAAMLAAFDGQPLPERSSCTPSA
SVFYDAIGAVRDSMYCGTALPPSILATLAAARNTVMTNAGLPGSGCAMGD
AASVFESLCQRQRDFFPVSSWPATLEGRRALVASTRKTLGMDWRGRVTCP
TDDHALREVCPLQSAAMRDPTVFTIPHG
back to top

mRNA from alignment at P-littoralis_Contig1150:23561..24199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1150.7.1 ID=mRNA_P-littoralis_Contig1150.7.1|Name=mRNA_P-littoralis_Contig1150.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig1150:23561..24199+ (Pylaiella littoralis U1_48)
GAGAGCGACAGCGACGACGAACCCGTGCAGGACCTTCATTTCGCTCCTAA
CAGCCACTCGAACTGCTTTCACAACGTCGCCATGGCGGCCATGCTCGCGG
CTTTCGACGGCCAGCCTCTGCCTGAGAGATCATCTTGCACTCCCTCTGCG
TCGGTCTTCTACGATGCCATCGGGGCCGTGCGCGACAGCATGTACTGTGG
CACCGCCCTTCCGCCTTCCATTTTGGTAAGTACCGATGCCTGGGTCATTT
TCGCTATCCTAGACACCTTCGACCACCGCACCTTTGGCGCATTTTTAATG
GTCTCCTTTTCTGTGCGTACATGTTGAAGGCGACCCTGGCTGCGGCTCGG
AACACTGTCATGACGAACGCCGGATTGCCTGGTTCCGGTTGCGCCATGGG
AGACGCCGCTTCCGTGTTCGAGTCACTGTGCCAGCGCCAACGCGACTTCT
TCCCGGTTTCGTCGTGGCCGGCAACGCTCGAGGGCAGACGTGCCCTCGTC
GCTTCCACGCGCAAGACCCTCGGCATGGACTGGAGGGGTCGTGTGACTTG
CCCGACAGACGATCACGCTCTGCGGGAGGTTTGCCCTCTTCAATCCGCCG
CGATGCGTGACCCAACAGTGTTCACTATTCCCCACGGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1150:23561..24199+

>mRNA_P-littoralis_Contig1150.7.1 ID=mRNA_P-littoralis_Contig1150.7.1|Name=mRNA_P-littoralis_Contig1150.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig1150:23561..24199+ (Pylaiella littoralis U1_48)
GAGAGCGACAGCGACGACGAACCCGTGCAGGACCTTCATTTCGCTCCTAA
CAGCCACTCGAACTGCTTTCACAACGTCGCCATGGCGGCCATGCTCGCGG
CTTTCGACGGCCAGCCTCTGCCTGAGAGATCATCTTGCACTCCCTCTGCG
TCGGTCTTCTACGATGCCATCGGGGCCGTGCGCGACAGCATGTACTGTGG
CACCGCCCTTCCGCCTTCCATTTTGGCGACCCTGGCTGCGGCTCGGAACA
CTGTCATGACGAACGCCGGATTGCCTGGTTCCGGTTGCGCCATGGGAGAC
GCCGCTTCCGTGTTCGAGTCACTGTGCCAGCGCCAACGCGACTTCTTCCC
GGTTTCGTCGTGGCCGGCAACGCTCGAGGGCAGACGTGCCCTCGTCGCTT
CCACGCGCAAGACCCTCGGCATGGACTGGAGGGGTCGTGTGACTTGCCCG
ACAGACGATCACGCTCTGCGGGAGGTTTGCCCTCTTCAATCCGCCGCGAT
GCGTGACCCAACAGTGTTCACTATTCCCCACGGC
back to top